PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000253451	[[8117650, 8117706], [8117883, 8118006], [8121035, 8121153], [8121249, 8121383], [8122687, 8122804], [8127101, 8127506]]	[[8117933, 8118006], [8121035, 8121153], [8121249, 8121383], [8122687, 8122804], [8127101, 8127109]]
ENST00000390669	[[8117883, 8118006], [8121035, 8121153], [8121249, 8121383], [8122684, 8122804], [8127101, 8127530]]	[[8117933, 8118006], [8121035, 8121153], [8121249, 8121383], [8122684, 8122804], [8127101, 8127109]]
ENST00000458625	[[8117933, 8118006], [8121035, 8121153], [8122684, 8122804], [8127101, 8127534]]	[[8117933, 8118006], [8121035, 8121153], [8122684, 8122748]]
ENST00000315626	[[8117650, 8117706], [8117883, 8118006], [8121035, 8121153], [8122684, 8122748]]	[[8117933, 8118006], [8121035, 8121153], [8122684, 8122748]]
NM_001201359	[[8117645, 8117706], [8117883, 8118006], [8121035, 8121153], [8121249, 8121383], [8122687, 8122804], [8127101, 8127547]]	[[8117933, 8118006], [8121035, 8121153], [8121249, 8121383], [8122687, 8122804], [8127101, 8127109]]
NM_005624	[[8117645, 8117706], [8117883, 8118006], [8121035, 8121153], [8121249, 8121383], [8122684, 8122804], [8127101, 8127547]]	[[8117933, 8118006], [8121035, 8121153], [8121249, 8121383], [8122684, 8122804], [8127101, 8127109]]

Promoter

Chrom	Start	End	Description
chr19	8117200	8117216	CAGE_peak_3_at_CCL25_5end
chr19	8117219	8117240	CAGE_peak_2_at_CCL25_5end
chr19	8117636	8117653	CAGE_peak_1_at_CCL25_5end
chr19	8117881	8117919	CAGE_peak_5_at_CCL25_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I008050	8050001	8054897	1.87	[{'connected_gene': 'CCL25', 'score': 550.77}, {'connected_gene': 'RETN', 'score': 5.24}, {'connected_gene': 'MCEMP1', 'score': 4.67}, {'connected_gene': 'STXBP2', 'score': 2.58}, {'connected_gene': 'PRAM1', 'score': 1.5}, {'connected_gene': 'GC19M008058', 'score': 0.44}]
chr19	GH19I008040	8040896	8041308	0.56	[{'connected_gene': 'CCL25', 'score': 0.39}, {'connected_gene': 'LOC105372266', 'score': 0.29}]
chr19	GH19I008032	8032207	8037883	1.19	[{'connected_gene': 'HNRNPM', 'score': 28.68}, {'connected_gene': 'ZNF558', 'score': 24.69}, {'connected_gene': 'XAB2', 'score': 23.43}, {'connected_gene': 'ZNF557', 'score': 22.55}, {'connected_gene': 'ELAVL1', 'score': 21.03}, {'connected_gene': 'MAP2K7', 'score': 11.61}, {'connected_gene': 'TIMM44', 'score': 11.09}, {'connected_gene': 'ZNF414', 'score': 10.74}, {'connected_gene': 'ENSG00000269139', 'score': 9.09}, {'connected_gene': 'CCL25', 'score': 8.56}, {'connected_gene': 'LOC105372266', 'score': 6.42}, {'connected_gene': 'SNAPC2', 'score': 5.31}]
chr19	GH19I008003	8003682	8006991	2.03	[{'connected_gene': 'ELAVL1', 'score': 563.4}, {'connected_gene': 'GC19P008006', 'score': 550.77}, {'connected_gene': 'ZNF557', 'score': 12.97}, {'connected_gene': 'XAB2', 'score': 11.94}, {'connected_gene': 'HNRNPM', 'score': 10.63}, {'connected_gene': 'ZNF414', 'score': 10.02}, {'connected_gene': 'LOC105372266', 'score': 8.75}, {'connected_gene': 'CCL25', 'score': 7.85}, {'connected_gene': 'GC19M008006', 'score': 0.77}, {'connected_gene': 'GC19P007992', 'score': 0.39}]
chr19	GH19I008028	8028086	8030467	0.74	[{'connected_gene': 'ELAVL1', 'score': 12.36}, {'connected_gene': 'TIMM44', 'score': 11.44}, {'connected_gene': 'CCL25', 'score': 8.5}, {'connected_gene': 'LOC105372266', 'score': 0.34}]
chr19	GH19I008017	8017937	8018086	0.69	[{'connected_gene': 'LOC105372266', 'score': 0.44}, {'connected_gene': 'CCL25', 'score': 0.29}]
chr19	GH19I008024	8024949	8026245	0.43	[{'connected_gene': 'TIMM44', 'score': 11.81}, {'connected_gene': 'CCL25', 'score': 8.47}, {'connected_gene': 'LOC105372266', 'score': 6.41}]
chr19	GH19I007977	7977281	7981321	0.66	[{'connected_gene': 'PIR52412', 'score': 550.77}, {'connected_gene': 'TIMM44', 'score': 15.47}, {'connected_gene': 'ZNF414', 'score': 10.02}, {'connected_gene': 'LOC105372266', 'score': 8.15}, {'connected_gene': 'CCL25', 'score': 7.79}, {'connected_gene': 'ENSG00000269139', 'score': 5.94}, {'connected_gene': 'ENSG00000269813', 'score': 0.34}, {'connected_gene': 'ELAVL1', 'score': 0.31}]