PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000367818	[[168545710, 168545936], [168549300, 168549415], [168550289, 168551315]]	[[168545875, 168545936], [168549300, 168549415], [168550289, 168550458]]
NM_002995	[[168545710, 168545936], [168549300, 168549415], [168550289, 168551315]]	[[168545875, 168545936], [168549300, 168549415], [168550289, 168550458]]

Promoter

Chrom	Start	End	Description
chr1	168545833	168545848	CAGE_peak_1_at_XCL1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I168562	168562205	168562412	0.39	[{'connected_gene': 'MIR557', 'score': 10.47}, {'connected_gene': 'XCL1', 'score': 0.39}, {'connected_gene': 'XCL2', 'score': 0.37}]
chr1	GH01I168553	168553787	168555231	0.9	[{'connected_gene': 'XCL2', 'score': 18.15}, {'connected_gene': 'XCL1', 'score': 16.7}, {'connected_gene': 'ATP1B1', 'score': 9.39}, {'connected_gene': 'LOC101928596', 'score': 9.39}, {'connected_gene': 'GC01P168543', 'score': 0.39}]
chr1	GH01I168534	168534587	168537236	1.19	[{'connected_gene': 'XCL2', 'score': 13.19}, {'connected_gene': 'XCL1', 'score': 3.32}, {'connected_gene': 'GC01P168543', 'score': 0.44}, {'connected_gene': 'ENSG00000228697', 'score': 0.26}]
chr1	GH01I168531	168531588	168532300	0.4	[{'connected_gene': 'XCL2', 'score': 11.21}, {'connected_gene': 'XCL1', 'score': 7.86}, {'connected_gene': 'GC01P168543', 'score': 0.39}, {'connected_gene': 'ENSG00000228697', 'score': 0.28}]
chr1	GH01I168557	168557460	168557975	0.96	[{'connected_gene': 'XCL2', 'score': 11.4}, {'connected_gene': 'XCL1', 'score': 0.37}]
chr1	GH01I169024	169024897	169025443	0.95	[{'connected_gene': 'XCL1', 'score': 13.33}, {'connected_gene': 'XCL2', 'score': 6.99}, {'connected_gene': 'GC01M168993', 'score': 0.31}, {'connected_gene': 'RNA5SP66', 'score': 0.26}, {'connected_gene': 'LINC00970', 'score': 0.21}]
chr1	GH01I168518	168518950	168523229	1.11	[{'connected_gene': 'XCL1', 'score': 33.63}, {'connected_gene': 'XCL2', 'score': 17.23}, {'connected_gene': 'GC01P168543', 'score': 0.34}, {'connected_gene': 'ENSG00000228697', 'score': 0.31}]
chr1	GH01I168509	168509227	168511212	1.18	[{'connected_gene': 'XCL1', 'score': 13.49}, {'connected_gene': 'XCL2', 'score': 12.28}, {'connected_gene': 'ENSG00000228697', 'score': 0.39}, {'connected_gene': 'GC01P168543', 'score': 0.29}]
chr1	GH01I168576	168576411	168576470	0.61	[{'connected_gene': 'XCL1', 'score': 550.77}, {'connected_gene': 'ATP1B1', 'score': 9.57}, {'connected_gene': 'LOC101928596', 'score': 9.57}, {'connected_gene': 'GC01M168578', 'score': 0.77}]
chr1	GH01I168482	168482822	168485951	0.76	[{'connected_gene': 'LOC101928596', 'score': 8.93}, {'connected_gene': 'ATP1B1', 'score': 8.93}, {'connected_gene': 'XCL1', 'score': 4.93}, {'connected_gene': 'LOC101928565', 'score': 0.39}, {'connected_gene': 'ENSG00000228697', 'score': 0.39}, {'connected_gene': 'QRSL1P1', 'score': 0.29}]
chr1	GH01I168495	168495076	168499722	1.34	[{'connected_gene': 'LOC101928565', 'score': 550.77}, {'connected_gene': 'ENSG00000228697', 'score': 550.77}, {'connected_gene': 'NME7', 'score': 10.3}, {'connected_gene': 'XCL2', 'score': 5.24}, {'connected_gene': 'XCL1', 'score': 4.59}, {'connected_gene': 'GC01P168543', 'score': 0.25}]
chr1	GH01I168543	168543987	168544046	0.7	[{'connected_gene': 'GC01P168543', 'score': 550.77}, {'connected_gene': 'XCL2', 'score': 550.77}, {'connected_gene': 'RPL7AP19', 'score': 550.77}, {'connected_gene': 'XCL1', 'score': 9.48}]