PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000006053	[[57406369, 57406550], [57413545, 57413666], [57415941, 57418960]]	[[57406480, 57406550], [57413545, 57413666], [57415941, 57416944]]
ENST00000563383	[[57406388, 57406550], [57413527, 57413666], [57415941, 57418953]]	[[57406480, 57406550], [57413527, 57413666], [57415941, 57416944]]
ENST00000564948	[[57406436, 57406550], [57415941, 57416390]]	[[57406480, 57406550], [57415941, 57416039]]
ENST00000565912	[[57410883, 57413666], [57415941, 57418954]]	[[57413589, 57413666], [57415941, 57416944]]
NM_001304392	[[57406372, 57406550], [57415941, 57418960]]	[[57416005, 57416944]]
NM_002996	[[57406372, 57406550], [57413545, 57413666], [57415941, 57418960]]	[[57406480, 57406550], [57413545, 57413666], [57415941, 57416944]]

Promoter

Chrom	Start	End	Description
chr16	57406368	57406392	CAGE_peak_2_at_CX3CL1_5end
chr16	57406393	57406411	CAGE_peak_1_at_CX3CL1_5end
chr16	57406456	57406465	CAGE_peak_3_at_CX3CL1_5end
chr16	57416881	57416890	CAGE_peak_4_at_CX3CL1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I057633	57633289	57640276	1.94	[{'connected_gene': 'ADGRG1', 'score': 568.62}, {'connected_gene': 'ADGRG3', 'score': 11.85}, {'connected_gene': 'CCL17', 'score': 5.26}, {'connected_gene': 'PLLP', 'score': 2.11}, {'connected_gene': 'CX3CL1', 'score': 1.31}, {'connected_gene': 'GC16M057629', 'score': 0.77}, {'connected_gene': 'GC16P057639', 'score': 0.77}]
chr16	GH16I057392	57392355	57393447	0.31	[{'connected_gene': 'CX3CL1', 'score': 12.76}, {'connected_gene': 'CCL22', 'score': 12.71}, {'connected_gene': 'PLLP', 'score': 10.64}, {'connected_gene': 'DOK4', 'score': 6.33}, {'connected_gene': 'CIAPIN1', 'score': 5.58}, {'connected_gene': 'COQ9', 'score': 4.93}, {'connected_gene': 'GC16M057389', 'score': 0.77}, {'connected_gene': 'CCL17', 'score': 0.77}]
chr16	GH16I057342	57340189	57340253	0.49	[{'connected_gene': 'CX3CL1', 'score': 12.15}, {'connected_gene': 'ENSG00000271456', 'score': 0.44}, {'connected_gene': 'CCL22', 'score': 0.37}, {'connected_gene': 'GC16M057308', 'score': 0.25}]
chr16	GH16I057339	57339485	57340149	0.98	[{'connected_gene': 'CX3CL1', 'score': 12.15}, {'connected_gene': 'ENSG00000271456', 'score': 0.44}, {'connected_gene': 'CCL22', 'score': 0.37}, {'connected_gene': 'GC16M057308', 'score': 0.25}]
chr16	GH16I057340	57339201	57339400	0.38	[{'connected_gene': 'CX3CL1', 'score': 12.15}, {'connected_gene': 'ENSG00000271456', 'score': 0.44}, {'connected_gene': 'CCL22', 'score': 0.37}, {'connected_gene': 'GC16M057308', 'score': 0.25}]
chr16	GH16I057341	57340777	57342378	1	[{'connected_gene': 'CX3CL1', 'score': 17.03}, {'connected_gene': 'CIAPIN1', 'score': 11.3}, {'connected_gene': 'RSPRY1', 'score': 10.66}, {'connected_gene': 'CNGB1', 'score': 8.82}, {'connected_gene': 'ENSG00000271456', 'score': 0.44}, {'connected_gene': 'CCL22', 'score': 0.37}, {'connected_gene': 'GC16M057308', 'score': 0.25}]
chr16	GH16I057371	57371350	57374770	2.15	[{'connected_gene': 'CX3CL1', 'score': 550.77}, {'connected_gene': 'CIAPIN1', 'score': 12.26}, {'connected_gene': 'GC16M057308', 'score': 0.37}]
chr16	GH16I057376	57376925	57379051	1.05	[{'connected_gene': 'CX3CL1', 'score': 0.44}, {'connected_gene': 'GC16M057308', 'score': 0.39}]
chr16	GH16I057306	57306505	57308408	0.46	[{'connected_gene': 'CCL22', 'score': 12.04}, {'connected_gene': 'CX3CL1', 'score': 12.01}, {'connected_gene': 'PLLP', 'score': 11.72}, {'connected_gene': 'ARL2BP', 'score': 10.39}, {'connected_gene': 'ENSG00000261114', 'score': 5.94}, {'connected_gene': 'TRL-CAG2-2', 'score': 0.44}, {'connected_gene': 'RPL23AP91', 'score': 0.39}, {'connected_gene': 'GC16M057308', 'score': 0.18}]
chr16	GH16I057303	57303574	57305811	1.35	[{'connected_gene': 'CCL22', 'score': 12.04}, {'connected_gene': 'CX3CL1', 'score': 12.01}, {'connected_gene': 'PLLP', 'score': 11.72}, {'connected_gene': 'ARL2BP', 'score': 10.68}, {'connected_gene': 'TRL-CAG2-2', 'score': 0.77}, {'connected_gene': 'RPL23AP91', 'score': 0.37}]
chr16	GH16I057343	57343301	57344000	0.9	[{'connected_gene': 'CCL22', 'score': 33.76}, {'connected_gene': 'CX3CL1', 'score': 13.03}, {'connected_gene': 'LOC105371286', 'score': 5.8}, {'connected_gene': 'ENSG00000271456', 'score': 0.39}, {'connected_gene': 'GC16M057308', 'score': 0.25}]
chr16	GH16I057413	57413079	57414118	1.06	[{'connected_gene': 'CCL17', 'score': 550.37}, {'connected_gene': 'PLLP', 'score': 11.77}, {'connected_gene': 'CX3CL1', 'score': 11.55}, {'connected_gene': 'CCL22', 'score': 11.52}, {'connected_gene': 'COQ9', 'score': 5.0}, {'connected_gene': 'GC16P057430', 'score': 0.37}]
chr16	GH16I057394	57394169	57395019	0.92	[{'connected_gene': 'CCL17', 'score': 555.98}, {'connected_gene': 'NUDT21', 'score': 20.29}, {'connected_gene': 'CX3CL1', 'score': 12.76}, {'connected_gene': 'CCL22', 'score': 12.7}, {'connected_gene': 'PLLP', 'score': 11.12}, {'connected_gene': 'CNGB1', 'score': 9.37}, {'connected_gene': 'ADGRG1', 'score': 1.35}, {'connected_gene': 'GC16M057389', 'score': 0.77}]
chr16	GH16I057380	57380669	57381492	0.8	[{'connected_gene': 'CIAPIN1', 'score': 10.22}, {'connected_gene': 'GC16M057308', 'score': 0.44}, {'connected_gene': 'CX3CL1', 'score': 0.44}]
chr16	GH16I057386	57386042	57386903	0.43	[{'connected_gene': 'CIAPIN1', 'score': 14.91}, {'connected_gene': 'CCL22', 'score': 13.33}, {'connected_gene': 'PLLP', 'score': 10.76}, {'connected_gene': 'GC16M057308', 'score': 0.77}, {'connected_gene': 'CX3CL1', 'score': 0.39}]
chr16	GH16I057416	57416107	57419785	1.18	[{'connected_gene': 'CIAPIN1', 'score': 15.43}, {'connected_gene': 'NUDT21', 'score': 12.22}, {'connected_gene': 'CX3CL1', 'score': 11.84}, {'connected_gene': 'CCL22', 'score': 11.81}, {'connected_gene': 'PLLP', 'score': 11.76}, {'connected_gene': 'POLR2C', 'score': 11.37}, {'connected_gene': 'ARL2BP', 'score': 10.87}, {'connected_gene': 'GC16P057430', 'score': 0.39}, {'connected_gene': 'CCL17', 'score': 0.34}]
chr16	GH16I057482	57482163	57487479	2.22	[{'connected_gene': 'DOK4', 'score': 563.38}, {'connected_gene': 'CIAPIN1', 'score': 21.15}, {'connected_gene': 'COQ9', 'score': 20.29}, {'connected_gene': 'LOC105371286', 'score': 13.11}, {'connected_gene': 'POLR2C', 'score': 12.07}, {'connected_gene': 'CX3CL1', 'score': 10.1}, {'connected_gene': 'CCL22', 'score': 10.09}, {'connected_gene': 'USB1', 'score': 6.55}, {'connected_gene': 'PIR51542', 'score': 0.37}]
chr16	GH16I057434	57434069	57434218	0.2	[{'connected_gene': 'DOK4', 'score': 11.85}, {'connected_gene': 'POLR2C', 'score': 11.84}, {'connected_gene': 'CX3CL1', 'score': 10.84}, {'connected_gene': 'CCL22', 'score': 10.81}, {'connected_gene': 'ARL2BP', 'score': 10.08}, {'connected_gene': 'GC16P057430', 'score': 0.77}, {'connected_gene': 'GC16P057442', 'score': 0.44}, {'connected_gene': 'CIAPIN1', 'score': 0.39}]
chr16	GH16I057235	57235534	57236340	0.76	[{'connected_gene': 'PLLP', 'score': 27.64}, {'connected_gene': 'FAM192A', 'score': 11.53}, {'connected_gene': 'RSPRY1', 'score': 11.53}, {'connected_gene': 'CCL22', 'score': 10.74}, {'connected_gene': 'CX3CL1', 'score': 10.73}, {'connected_gene': 'ARL2BP', 'score': 0.44}]
chr16	GH16I057234	57234890	57235475	0.38	[{'connected_gene': 'PLLP', 'score': 11.65}, {'connected_gene': 'FAM192A', 'score': 11.53}, {'connected_gene': 'RSPRY1', 'score': 11.53}, {'connected_gene': 'CCL22', 'score': 10.74}, {'connected_gene': 'CX3CL1', 'score': 10.73}, {'connected_gene': 'ARL2BP', 'score': 0.44}]
chr16	GH16I057382	57382970	57385790	0.87	[{'connected_gene': 'PLLP', 'score': 10.68}, {'connected_gene': 'DOK4', 'score': 7.75}, {'connected_gene': 'CIAPIN1', 'score': 6.67}, {'connected_gene': 'GC16M057308', 'score': 0.77}, {'connected_gene': 'CX3CL1', 'score': 0.39}]
chr16	GH16I057297	57297051	57297723	0.43	[{'connected_gene': 'ARL2BP', 'score': 11.65}, {'connected_gene': 'CCL22', 'score': 11.35}, {'connected_gene': 'CX3CL1', 'score': 11.32}, {'connected_gene': 'CIAPIN1', 'score': 10.86}, {'connected_gene': 'COQ9', 'score': 10.86}, {'connected_gene': 'POLR2C', 'score': 10.49}, {'connected_gene': 'MT1F', 'score': 5.21}, {'connected_gene': 'TRL-CAG2-1', 'score': 0.77}, {'connected_gene': 'PLLP', 'score': 0.39}]
chr16	GH16I057349	57349001	57349800	0.94	[{'connected_gene': 'NUDT21', 'score': 13.62}, {'connected_gene': 'CX3CL1', 'score': 5.4}, {'connected_gene': 'CCL22', 'score': 0.44}, {'connected_gene': 'ENSG00000271456', 'score': 0.37}, {'connected_gene': 'GC16M057308', 'score': 0.28}]
chr16	GH16I057299	57297929	57298502	1	[{'connected_gene': 'TRL-CAG2-1', 'score': 550.77}, {'connected_gene': 'ARL2BP', 'score': 11.65}, {'connected_gene': 'CCL22', 'score': 11.35}, {'connected_gene': 'CX3CL1', 'score': 11.33}, {'connected_gene': 'CIAPIN1', 'score': 10.87}, {'connected_gene': 'COQ9', 'score': 10.87}, {'connected_gene': 'POLR2C', 'score': 10.49}, {'connected_gene': 'PLLP', 'score': 0.39}]
chr16	GH16I057298	57298675	57301483	1.52	[{'connected_gene': 'TRL-CAG2-2', 'score': 550.77}, {'connected_gene': 'TRL-CAG2-1', 'score': 550.77}, {'connected_gene': 'RSPRY1', 'score': 26.99}, {'connected_gene': 'POLR2C', 'score': 22.24}, {'connected_gene': 'FAM192A', 'score': 14.45}, {'connected_gene': 'CSNK2A2', 'score': 12.03}, {'connected_gene': 'CCL22', 'score': 11.83}, {'connected_gene': 'CX3CL1', 'score': 11.8}, {'connected_gene': 'ARL2BP', 'score': 11.65}, {'connected_gene': 'CIAPIN1', 'score': 10.87}, {'connected_gene': 'COQ9', 'score': 10.87}, {'connected_gene': 'NUDT21', 'score': 10.59}, {'connected_gene': 'LOC101927556', 'score': 9.73}, {'connected_gene': 'PLLP', 'score': 6.74}, {'connected_gene': 'MT1F', 'score': 5.12}, {'connected_gene': 'GINS3', 'score': 4.98}]
chr16	GH16I057631	57631376	57633047	0.93	[{'connected_gene': 'GC16M057629', 'score': 550.77}, {'connected_gene': 'ENSG00000261633', 'score': 550.77}, {'connected_gene': 'ADGRG1', 'score': 14.02}, {'connected_gene': 'ADGRG3', 'score': 11.84}, {'connected_gene': 'PLLP', 'score': 6.45}, {'connected_gene': 'CX3CL1', 'score': 1.87}]
chr16	GH16I057379	57379409	57380335	0.65	[{'connected_gene': 'GC16M057308', 'score': 0.44}, {'connected_gene': 'CX3CL1', 'score': 0.44}]
chr16	GH16I057640	57640596	57640978	0.79	[{'connected_gene': 'GC16P057639', 'score': 550.77}, {'connected_gene': 'CNGB1', 'score': 9.19}, {'connected_gene': 'ADGRG1', 'score': 6.09}, {'connected_gene': 'PLLP', 'score': 5.59}, {'connected_gene': 'CX3CL1', 'score': 3.0}, {'connected_gene': 'GC16M057649', 'score': 0.37}]
chr16	GH16I057387	57387571	57388833	1.08	[{'connected_gene': 'GC16M057308', 'score': 550.77}, {'connected_gene': 'NUDT21', 'score': 24.01}, {'connected_gene': 'RSPRY1', 'score': 23.16}, {'connected_gene': 'LOC105371286', 'score': 22.41}, {'connected_gene': 'CCL22', 'score': 13.33}, {'connected_gene': 'LOC101927556', 'score': 13.2}, {'connected_gene': 'CIAPIN1', 'score': 11.77}, {'connected_gene': 'POLR2C', 'score': 10.01}, {'connected_gene': 'CFAP20', 'score': 9.93}, {'connected_gene': 'CCL17', 'score': 3.5}, {'connected_gene': 'CX3CL1', 'score': 0.37}]