PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000302190	[[97505578, 97506559], [97605707, 97605819], [97614622, 97614756], [97620562, 97620698], [97621612, 97624000]]	[[97506499, 97506559], [97605707, 97605819], [97614622, 97614756], [97620562, 97620698], [97621612, 97621776]]
ENST00000520233	[[97506040, 97506559], [97549527, 97549571]]	None
ENST00000519587	[[97506040, 97506271], [97541420, 97541499], [97549527, 97549653], [97550923, 97551044]]	None
ENST00000518385	[[97506040, 97506563], [97614622, 97614756], [97620562, 97620698], [97621612, 97622402]]	[[97506499, 97506563], [97614622, 97614756], [97620562, 97620698], [97621612, 97621776]]
ENST00000522911	[[97506235, 97506271], [97605707, 97605819], [97614622, 97614756], [97620562, 97620698], [97621612, 97621871]]	[[97605734, 97605819], [97614622, 97614756], [97620562, 97620698], [97621612, 97621776]]
ENST00000519914	[[97592576, 97592796], [97605707, 97605819], [97614622, 97614756], [97620562, 97620698], [97621612, 97622328]]	[[97605734, 97605819], [97614622, 97614756], [97620562, 97620698], [97621612, 97621776]]
ENST00000521590	[[97597172, 97597241], [97605707, 97605819], [97614622, 97614756], [97620562, 97620698], [97621612, 97621668]]	[[97605734, 97605819], [97614622, 97614756], [97620562, 97620698], [97621612, 97621668]]
ENST00000523877	[[97598614, 97598772], [97605707, 97605819], [97614622, 97614756], [97620562, 97620698], [97621612, 97621693]]	[[97605734, 97605819], [97614622, 97614756], [97620562, 97620698], [97621612, 97621693]]
NM_002998	[[97505881, 97506559], [97605707, 97605819], [97614622, 97614756], [97620562, 97620698], [97621612, 97624037]]	[[97506499, 97506559], [97605707, 97605819], [97614622, 97614756], [97620562, 97620698], [97621612, 97621776]]

Promoter

Chrom	Start	End	Description
chr8	97505870	97505887	CAGE_peak_2_at_SDC2_5end
chr8	97506007	97506016	CAGE_peak_3_at_SDC2_5end
chr8	97506033	97506048	CAGE_peak_1_at_SDC2_5end
chr8	97597117	97597144	CAGE_peak_5_at_SDC2_5end
chr8	97597148	97597166	CAGE_peak_4_at_SDC2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I096482	96482013	96482142	0.2	[{'connected_gene': 'SDC2', 'score': 0.39}, {'connected_gene': 'RNU6-1172P', 'score': 0.23}, {'connected_gene': 'GC08M096432', 'score': 0.23}]
chr8	GH08I096861	96861200	96862200	1.08	[{'connected_gene': 'SDC2', 'score': 5.14}, {'connected_gene': 'CPQ', 'score': 1.79}, {'connected_gene': 'GC08P096912', 'score': 0.23}, {'connected_gene': 'GC08P096734', 'score': 0.13}]
chr8	GH08I096904	96904713	96907800	1.41	[{'connected_gene': 'SDC2', 'score': 4.96}, {'connected_gene': 'CPQ', 'score': 1.67}, {'connected_gene': 'GC08P096912', 'score': 0.44}, {'connected_gene': 'GC08P096734', 'score': 0.09}]
chr8	GH08I096851	96851415	96855600	1.21	[{'connected_gene': 'SDC2', 'score': 5.14}, {'connected_gene': 'CPQ', 'score': 1.53}, {'connected_gene': 'GC08P096912', 'score': 0.22}, {'connected_gene': 'GC08P096734', 'score': 0.13}]
chr8	GH08I096908	96908201	96910543	1.06	[{'connected_gene': 'SDC2', 'score': 5.03}, {'connected_gene': 'CPQ', 'score': 3.47}, {'connected_gene': 'GC08P096912', 'score': 0.77}, {'connected_gene': 'GC08P096734', 'score': 0.09}]
chr8	GH08I096492	96492897	96497715	2.19	[{'connected_gene': 'SDC2', 'score': 550.77}, {'connected_gene': 'CPQ', 'score': 9.95}]
chr8	GH08I096507	96507014	96508009	0.31	[{'connected_gene': 'SDC2', 'score': 0.39}, {'connected_gene': 'CPQ', 'score': 0.12}]
chr8	GH08I096518	96518800	96519222	0.84	[{'connected_gene': 'SDC2', 'score': 0.31}, {'connected_gene': 'CPQ', 'score': 0.13}]
chr8	GH08I096857	96857001	96858200	0.4	[{'connected_gene': 'SDC2', 'score': 4.74}, {'connected_gene': 'GC08P096912', 'score': 0.23}, {'connected_gene': 'GC08P096734', 'score': 0.13}, {'connected_gene': 'CPQ', 'score': 0.08}]
chr8	GH08I096510	96510928	96512351	0.92	[{'connected_gene': 'SDC2', 'score': 0.37}, {'connected_gene': 'CPQ', 'score': 0.12}]
chr8	GH08I096531	96531153	96533187	0.63	[{'connected_gene': 'SDC2', 'score': 0.28}, {'connected_gene': 'CPQ', 'score': 0.14}]
chr8	GH08I096559	96559526	96559674	0.22	[{'connected_gene': 'SDC2', 'score': 0.2}, {'connected_gene': 'CPQ', 'score': 0.17}]
chr8	GH08I096514	96514991	96516247	0.58	[{'connected_gene': 'SDC2', 'score': 0.34}, {'connected_gene': 'CPQ', 'score': 0.13}]
chr8	GH08I096456	96456068	96456800	0.89	[{'connected_gene': 'RNU6-1172P', 'score': 0.31}, {'connected_gene': 'GC08M096432', 'score': 0.31}, {'connected_gene': 'SDC2', 'score': 0.28}, {'connected_gene': 'LOC105375653', 'score': 0.28}]
chr8	GH08I096454	96454601	96455000	0.43	[{'connected_gene': 'RNU6-1172P', 'score': 0.34}, {'connected_gene': 'GC08M096432', 'score': 0.34}, {'connected_gene': 'SDC2', 'score': 0.28}, {'connected_gene': 'LOC105375653', 'score': 0.28}]
chr8	GH08I096443	96443775	96445613	0.85	[{'connected_gene': 'RNU6-1172P', 'score': 0.39}, {'connected_gene': 'GC08M096432', 'score': 0.39}, {'connected_gene': 'LOC105375653', 'score': 0.34}, {'connected_gene': 'SDC2', 'score': 0.25}]
chr8	GH08I096448	96448606	96449286	0.68	[{'connected_gene': 'RNU6-1172P', 'score': 0.37}, {'connected_gene': 'GC08M096432', 'score': 0.37}, {'connected_gene': 'LOC105375653', 'score': 0.31}, {'connected_gene': 'SDC2', 'score': 0.26}]
chr8	GH08I096446	96446214	96447314	0.38	[{'connected_gene': 'RNU6-1172P', 'score': 0.37}, {'connected_gene': 'GC08M096432', 'score': 0.37}, {'connected_gene': 'LOC105375653', 'score': 0.31}, {'connected_gene': 'SDC2', 'score': 0.25}]
chr8	GH08I096583	96583402	96586230	0.69	[{'connected_gene': 'CPQ', 'score': 0.21}, {'connected_gene': 'SDC2', 'score': 0.16}]
chr8	GH08I096589	96589462	96594545	1.37	[{'connected_gene': 'CPQ', 'score': 10.85}, {'connected_gene': 'SDC2', 'score': 0.15}]
chr8	GH08I096619	96619679	96621401	1.22	[{'connected_gene': 'CPQ', 'score': 0.34}, {'connected_gene': 'SDC2', 'score': 0.13}]
chr8	GH08I096577	96577993	96580936	0.77	[{'connected_gene': 'CPQ', 'score': 0.2}, {'connected_gene': 'SDC2', 'score': 0.17}]
chr8	GH08I096554	96554813	96554962	0.38	[{'connected_gene': 'CPQ', 'score': 10.98}, {'connected_gene': 'SDC2', 'score': 0.21}]
chr8	GH08I096618	96618401	96618600	0.49	[{'connected_gene': 'CPQ', 'score': 0.31}, {'connected_gene': 'SDC2', 'score': 0.13}]
chr8	GH08I096570	96570734	96571999	0.7	[{'connected_gene': 'CPQ', 'score': 0.19}, {'connected_gene': 'SDC2', 'score': 0.18}]
chr8	GH08I096644	96643516	96643626	0.31	[{'connected_gene': 'CPQ', 'score': 550.77}, {'connected_gene': 'SDC2', 'score': 0.1}]
chr8	GH08I096504	96504310	96504910	0.46	[{'connected_gene': 'CPQ', 'score': 9.95}, {'connected_gene': 'SDC2', 'score': 0.39}]
chr8	GH08I096582	96582601	96582800	0.2	[{'connected_gene': 'CPQ', 'score': 0.21}, {'connected_gene': 'SDC2', 'score': 0.17}]
chr8	GH08I096519	96519650	96525715	1.25	[{'connected_gene': 'LOC102724804', 'score': 9.97}, {'connected_gene': 'SDC2', 'score': 0.31}, {'connected_gene': 'CPQ', 'score': 0.13}]
chr8	GH08I096525	96525913	96526062	0.63	[{'connected_gene': 'LOC102724804', 'score': 9.97}, {'connected_gene': 'SDC2', 'score': 5.22}, {'connected_gene': 'CPQ', 'score': 0.13}]