PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000395795	[[44793037, 44793345], [44874084, 44874171], [44876210, 44876328], [44880392, 44880497]]	[[44793338, 44793345], [44874084, 44874171], [44876210, 44876328], [44880392, 44880453]]
ENST00000374429	[[44865612, 44868791], [44874084, 44874171], [44876210, 44876328], [44880392, 44880540]]	[[44868775, 44868791], [44874084, 44874171], [44876210, 44876328], [44880392, 44880453]]
ENST00000395793	[[44868069, 44868538], [44876280, 44876328], [44880392, 44880540]]	[[44868335, 44868538], [44876280, 44876328], [44880392, 44880453]]
ENST00000374426	[[44871314, 44871480], [44874084, 44874171], [44876210, 44876328], [44880392, 44880491]]	[[44871386, 44871480], [44874084, 44874171], [44876210, 44876328], [44880392, 44880453]]
ENST00000343575	[[44872580, 44874171], [44876210, 44876328], [44880392, 44880540]]	[[44874080, 44874171], [44876210, 44876328], [44880392, 44880453]]
ENST00000395794	[[44872611, 44873353], [44874084, 44874171], [44876210, 44876328], [44880392, 44880497]]	[[44873196, 44873353], [44874084, 44874171], [44876210, 44876328], [44880392, 44880453]]
ENST00000496375	[[44874004, 44874171], [44876210, 44876328], [44881423, 44881941]]	None
ENST00000488591	[[44875858, 44876328], [44880392, 44880518]]	None
NM_000609	[[44865600, 44868791], [44874084, 44874171], [44876210, 44876328], [44880392, 44880545]]	[[44868775, 44868791], [44874084, 44874171], [44876210, 44876328], [44880392, 44880453]]
NM_001277990	[[44865600, 44868538], [44876280, 44876328], [44880392, 44880545]]	[[44868335, 44868538], [44876280, 44876328], [44880392, 44880453]]
NM_001033886	[[44871314, 44871480], [44874084, 44874171], [44876210, 44876328], [44880392, 44880545]]	[[44871386, 44871480], [44874084, 44874171], [44876210, 44876328], [44880392, 44880453]]
NM_199168	[[44872509, 44874171], [44876210, 44876328], [44880392, 44880545]]	[[44874080, 44874171], [44876210, 44876328], [44880392, 44880453]]
NM_001178134	[[44872509, 44873353], [44874084, 44874171], [44876210, 44876328], [44880392, 44880545]]	[[44873196, 44873353], [44874084, 44874171], [44876210, 44876328], [44880392, 44880453]]

Promoter

Chrom	Start	End	Description
chr10	44880536	44880553	CAGE_peak_1_at_CXCL12_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I043671	43671733	43671915	0.74	[{'connected_gene': 'ZNF32', 'score': 11.56}, {'connected_gene': 'CXCL12', 'score': 10.71}, {'connected_gene': 'LINC00619', 'score': 10.25}, {'connected_gene': 'ENSG00000228426', 'score': 0.44}, {'connected_gene': 'PIR60234', 'score': 0.34}, {'connected_gene': 'GC10M043601', 'score': 0.29}, {'connected_gene': 'ZNF32-AS3', 'score': 0.26}]
chr10	GH10I043689	43689046	43690905	1.37	[{'connected_gene': 'ZNF32', 'score': 11.46}, {'connected_gene': 'CXCL12', 'score': 10.85}, {'connected_gene': 'PIR60234', 'score': 0.77}, {'connected_gene': 'GC10M043601', 'score': 0.39}, {'connected_gene': 'ENSG00000228426', 'score': 0.34}]
chr10	GH10I044415	44415905	44417544	0.2	[{'connected_gene': 'RPL9P21', 'score': 550.77}, {'connected_gene': 'GC10M044415', 'score': 550.77}, {'connected_gene': 'CXCL12', 'score': 11.48}, {'connected_gene': 'ENSG00000270767', 'score': 0.19}]
chr10	GH10I044878	44878293	44879972	1.13	[{'connected_gene': 'TMEM72', 'score': 19.87}, {'connected_gene': 'ENSG00000234504', 'score': 11.54}, {'connected_gene': 'ENSG00000223462', 'score': 11.4}, {'connected_gene': 'CXCL12', 'score': 9.89}, {'connected_gene': 'AGAP4', 'score': 4.19}, {'connected_gene': 'EIF2AP4', 'score': 0.19}, {'connected_gene': 'TMEM72-AS1', 'score': 0.18}, {'connected_gene': 'GC10P044773', 'score': 0.14}]
chr10	GH10I044857	44857673	44857982	0.89	[{'connected_gene': 'TMEM72', 'score': 10.43}, {'connected_gene': 'CXCL12', 'score': 9.93}, {'connected_gene': 'ENSG00000227683', 'score': 5.01}, {'connected_gene': 'EIF2AP4', 'score': 0.23}, {'connected_gene': 'GC10P044773', 'score': 0.18}, {'connected_gene': 'TMEM72-AS1', 'score': 0.15}]
chr10	GH10I044861	44861015	44862176	0.46	[{'connected_gene': 'TMEM72', 'score': 10.63}, {'connected_gene': 'ENSG00000223462', 'score': 10.19}, {'connected_gene': 'CXCL12', 'score': 10.17}, {'connected_gene': 'EIF2AP4', 'score': 0.22}, {'connected_gene': 'GC10P044773', 'score': 0.17}, {'connected_gene': 'TMEM72-AS1', 'score': 0.15}]
chr10	GH10I044458	44458888	44460666	0.46	[{'connected_gene': 'CXCL12', 'score': 10.43}, {'connected_gene': 'ENSG00000270767', 'score': 0.31}, {'connected_gene': 'RPL9P21', 'score': 0.26}]
chr10	GH10I044478	44478136	44478279	0.79	[{'connected_gene': 'CXCL12', 'score': 10.69}, {'connected_gene': 'ENSG00000270767', 'score': 0.39}, {'connected_gene': 'RPL9P21', 'score': 0.21}]
chr10	GH10I044479	44478409	44479974	0.69	[{'connected_gene': 'CXCL12', 'score': 10.5}, {'connected_gene': 'ENSG00000270767', 'score': 0.44}, {'connected_gene': 'RPL9P21', 'score': 0.21}]
chr10	GH10I044863	44863331	44865658	1.12	[{'connected_gene': 'CXCL12', 'score': 9.81}, {'connected_gene': 'TMEM72', 'score': 0.25}, {'connected_gene': 'EIF2AP4', 'score': 0.22}, {'connected_gene': 'GC10P044773', 'score': 0.16}, {'connected_gene': 'TMEM72-AS1', 'score': 0.15}]
chr10	GH10I043823	43823801	43824000	0.2	[{'connected_gene': 'CXCL12', 'score': 9.54}, {'connected_gene': 'LINC00619', 'score': 0.34}, {'connected_gene': 'HNRNPA3P1', 'score': 0.29}]
chr10	GH10I043853	43853531	43853662	0.4	[{'connected_gene': 'CXCL12', 'score': 9.89}, {'connected_gene': 'LINC00619', 'score': 0.44}, {'connected_gene': 'LINC00840', 'score': 0.44}]
chr10	GH10I044438	44438244	44439081	0.72	[{'connected_gene': 'CXCL12', 'score': 11.13}, {'connected_gene': 'TMEM72-AS1', 'score': 4.35}, {'connected_gene': 'RPL9P21', 'score': 0.34}, {'connected_gene': 'ENSG00000270767', 'score': 0.25}]
chr10	GH10I044439	44439301	44439487	0.25	[{'connected_gene': 'CXCL12', 'score': 11.13}, {'connected_gene': 'TMEM72-AS1', 'score': 4.35}, {'connected_gene': 'RPL9P21', 'score': 0.34}, {'connected_gene': 'ENSG00000270767', 'score': 0.25}]
chr10	GH10I043904	43904456	43907006	0.66	[{'connected_gene': 'CXCL12', 'score': 9.49}, {'connected_gene': 'LOC105378277', 'score': 6.86}, {'connected_gene': 'LINC00841', 'score': 0.77}, {'connected_gene': 'LINC00840', 'score': 0.25}]
chr10	GH10I043930	43930532	43932292	0.38	[{'connected_gene': 'CXCL12', 'score': 10.7}, {'connected_gene': 'LOC105378277', 'score': 7.18}, {'connected_gene': 'PIR37397', 'score': 0.37}, {'connected_gene': 'LINC00841', 'score': 0.34}, {'connected_gene': 'ENSG00000237590', 'score': 0.06}]
chr10	GH10I043824	43824627	43825735	0.58	[{'connected_gene': 'CXCL12', 'score': 9.54}, {'connected_gene': 'LINC00840', 'score': 5.26}, {'connected_gene': 'LINC00619', 'score': 0.34}, {'connected_gene': 'HNRNPA3P1', 'score': 0.29}]
chr10	GH10I044280	44280417	44281636	0.31	[{'connected_gene': 'CXCL12', 'score': 10.34}, {'connected_gene': 'C10orf142', 'score': 0.39}, {'connected_gene': 'ENSG00000237590', 'score': 0.37}]
chr10	GH10I044324	44324585	44325552	0.76	[{'connected_gene': 'CXCL12', 'score': 11.43}, {'connected_gene': 'ENSG00000229116', 'score': 0.29}, {'connected_gene': 'PIR52448', 'score': 0.25}]
chr10	GH10I044298	44298053	44298222	0.2	[{'connected_gene': 'CXCL12', 'score': 10.43}, {'connected_gene': 'ENSG00000229116', 'score': 0.77}, {'connected_gene': 'PIR52448', 'score': 0.18}]
chr10	GH10I044512	44512193	44513209	0.43	[{'connected_gene': 'CXCL12', 'score': 10.2}, {'connected_gene': 'ENSG00000270767', 'score': 0.34}, {'connected_gene': 'GC10M044501', 'score': 0.29}]
chr10	GH10I044351	44351709	44353150	0.56	[{'connected_gene': 'CXCL12', 'score': 11.31}, {'connected_gene': 'ENSG00000229116', 'score': 10.56}, {'connected_gene': 'PIR52448', 'score': 0.34}]
chr10	GH10I044651	44651973	44652122	0.2	[{'connected_gene': 'CXCL12', 'score': 9.63}, {'connected_gene': 'ENSG00000234580', 'score': 0.25}, {'connected_gene': 'GC10P044715', 'score': 0.21}]
chr10	GH10I044306	44306135	44306863	0.63	[{'connected_gene': 'CXCL12', 'score': 10.83}, {'connected_gene': 'ENSG00000229116', 'score': 0.39}, {'connected_gene': 'PIR52448', 'score': 0.2}]
chr10	GH10I044362	44362953	44363122	0.46	[{'connected_gene': 'CXCL12', 'score': 11.6}, {'connected_gene': 'PIR52448', 'score': 0.39}, {'connected_gene': 'ENSG00000229116', 'score': 0.2}]
chr10	GH10I044300	44300179	44302615	1.35	[{'connected_gene': 'CXCL12', 'score': 10.43}, {'connected_gene': 'ENSG00000229116', 'score': 0.44}, {'connected_gene': 'PIR52448', 'score': 0.19}]
chr10	GH10I044650	44650621	44651926	0.43	[{'connected_gene': 'CXCL12', 'score': 9.63}, {'connected_gene': 'ENSG00000234580', 'score': 0.25}, {'connected_gene': 'GC10P044715', 'score': 0.21}]
chr10	GH10I044381	44381293	44386320	1.68	[{'connected_gene': 'CXCL12', 'score': 550.77}, {'connected_gene': 'GC10M044376', 'score': 0.44}]
chr10	GH10I044386	44386653	44386802	0.8	[{'connected_gene': 'CXCL12', 'score': 550.77}, {'connected_gene': 'GC10P044411', 'score': 0.34}]
chr10	GH10I043845	43845920	43847383	0.78	[{'connected_gene': 'LINC00619', 'score': 550.77}, {'connected_gene': 'CXCL12', 'score': 9.54}, {'connected_gene': 'ENSG00000229116', 'score': 9.29}, {'connected_gene': 'LOC105378277', 'score': 7.8}, {'connected_gene': 'LINC00840', 'score': 0.39}]
chr10	GH10I043822	43822092	43823797	0.4	[{'connected_gene': 'LINC00619', 'score': 11.73}, {'connected_gene': 'CXCL12', 'score': 9.62}, {'connected_gene': 'HNRNPA3P1', 'score': 0.29}]
chr10	GH10I044309	44309595	44312006	1.14	[{'connected_gene': 'ZNF32-AS2', 'score': 13.22}, {'connected_gene': 'ENSG00000273363', 'score': 11.86}, {'connected_gene': 'CXCL12', 'score': 10.61}, {'connected_gene': 'ENSG00000229116', 'score': 5.31}, {'connected_gene': 'PIR52448', 'score': 0.21}]
chr10	GH10I044400	44400207	44401167	0.38	[{'connected_gene': 'TMEM72-AS1', 'score': 4.68}, {'connected_gene': 'GC10P044411', 'score': 0.44}, {'connected_gene': 'CXCL12', 'score': 0.39}]
chr10	GH10I043854	43853819	43854944	1	[{'connected_gene': 'LOC105378277', 'score': 11.33}, {'connected_gene': 'CXCL12', 'score': 9.89}, {'connected_gene': 'LINC00619', 'score': 0.44}, {'connected_gene': 'LINC00840', 'score': 0.44}]
chr10	GH10I043888	43888673	43888782	0.66	[{'connected_gene': 'LOC105378277', 'score': 11.09}, {'connected_gene': 'LINC00619', 'score': 11.08}, {'connected_gene': 'CXCL12', 'score': 9.71}, {'connected_gene': 'LINC00841', 'score': 0.34}, {'connected_gene': 'LINC00840', 'score': 0.31}]
chr10	GH10I043672	43672233	43672382	0.31	[{'connected_gene': 'ENSG00000228426', 'score': 14.37}, {'connected_gene': 'ZNF32', 'score': 11.56}, {'connected_gene': 'CXCL12', 'score': 10.71}, {'connected_gene': 'LINC00619', 'score': 10.25}, {'connected_gene': 'PIR60234', 'score': 0.34}, {'connected_gene': 'GC10M043601', 'score': 0.29}, {'connected_gene': 'ZNF32-AS3', 'score': 0.26}]
chr10	GH10I044043	44043891	44045823	0.56	[{'connected_gene': 'ENSG00000229116', 'score': 10.41}, {'connected_gene': 'CXCL12', 'score': 9.97}, {'connected_gene': 'HNRNPF', 'score': 4.16}, {'connected_gene': 'PIR37397', 'score': 0.13}, {'connected_gene': 'ENSG00000237590', 'score': 0.08}]
chr10	GH10I044334	44334083	44335821	0.57	[{'connected_gene': 'ENSG00000229116', 'score': 11.1}, {'connected_gene': 'CXCL12', 'score': 10.91}, {'connected_gene': 'PIR52448', 'score': 0.28}]
chr10	GH10I044369	44369693	44371443	0.54	[{'connected_gene': 'PIR52448', 'score': 0.77}, {'connected_gene': 'CXCL12', 'score': 0.37}, {'connected_gene': 'ENSG00000229116', 'score': 0.18}]
chr10	GH10I044316	44316453	44316702	0.66	[{'connected_gene': 'ENSG00000229116', 'score': 11.76}, {'connected_gene': 'CXCL12', 'score': 10.82}, {'connected_gene': 'PIR52448', 'score': 0.22}]
chr10	GH10I044292	44292582	44295293	1.53	[{'connected_gene': 'ENSG00000229116', 'score': 550.77}, {'connected_gene': 'C10orf142', 'score': 550.77}, {'connected_gene': 'ZNF32-AS2', 'score': 24.65}, {'connected_gene': 'CXCL12', 'score': 9.99}, {'connected_gene': 'CEP164P1', 'score': 9.86}, {'connected_gene': 'PIR52448', 'score': 0.18}]