PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000458420	[[139654026, 139654325], [139894792, 139894915], [140122470, 140122666], [140123399, 140123608], [140139966, 140140116], [140167360, 140167546], [140178362, 140178611], [140185451, 140185573], [140251165, 140251328], [140265356, 140265523], [140275354, 140275503], [140277481, 140277699], [140280979, 140281150], [140281652, 140281798], [140281921, 140282045], [140282802, 140282987], [140284894, 140296239]]	[[139654216, 139654325], [139894792, 139894915], [140122470, 140122666], [140123399, 140123608], [140139966, 140140116], [140167360, 140167546], [140178362, 140178611], [140185451, 140185573], [140251165, 140251328], [140265356, 140265523], [140275354, 140275503], [140277481, 140277699], [140280979, 140281150], [140281652, 140281798], [140281921, 140282045], [140282802, 140282987], [140284894, 140285095]]
ENST00000511524	[[139654028, 139654325], [139894792, 139894915], [140122470, 140122666], [140123399, 140123608], [140139966, 140140116], [140167360, 140167546], [140178362, 140178611], [140185451, 140185573], [140251165, 140251328], [140265356, 140265523], [140275354, 140275897]]	None
NM_022131	[[139654026, 139654325], [139894792, 139894915], [140122470, 140122666], [140123399, 140123608], [140139966, 140140116], [140167360, 140167546], [140178362, 140178611], [140185451, 140185573], [140251165, 140251328], [140265356, 140265523], [140275354, 140275503], [140277481, 140277699], [140280979, 140281150], [140281652, 140281798], [140281921, 140282045], [140282802, 140282987], [140284894, 140286919]]	[[139654216, 139654325], [139894792, 139894915], [140122470, 140122666], [140123399, 140123608], [140139966, 140140116], [140167360, 140167546], [140178362, 140178611], [140185451, 140185573], [140251165, 140251328], [140265356, 140265523], [140275354, 140275503], [140277481, 140277699], [140280979, 140281150], [140281652, 140281798], [140281921, 140282045], [140282802, 140282987], [140284894, 140285095]]

Promoter

Chrom	Start	End	Description
chr3	139654000	139654011	CAGE_peak_2_at_CLSTN2_5end
chr3	139654018	139654039	CAGE_peak_1_at_CLSTN2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I140245	140245079	140245208	0.2	[{'connected_gene': 'COPB2', 'score': 4.02}, {'connected_gene': 'GC03P140312', 'score': 0.2}, {'connected_gene': 'GC03P140133', 'score': 0.14}, {'connected_gene': 'GC03P140132', 'score': 0.14}, {'connected_gene': 'CLSTN2', 'score': 0.06}]
chr3	GH03I139771	139771673	139775973	1.02	[{'connected_gene': 'CLSTN2', 'score': 8.53}, {'connected_gene': 'LOC100507291', 'score': 4.37}, {'connected_gene': 'ENSG00000251471', 'score': 0.21}, {'connected_gene': 'GC03P139691', 'score': 0.18}, {'connected_gene': 'PIR55855', 'score': 0.18}]
chr3	GH03I139934	139934784	139934788	0.75	[{'connected_gene': 'CLSTN2', 'score': 550.77}, {'connected_gene': 'GC03P139907', 'score': 0.31}, {'connected_gene': 'GC03P139858', 'score': 0.18}, {'connected_gene': 'GC03M139907', 'score': 0.17}]
chr3	GH03I140205	140203467	140203494	0.76	[{'connected_gene': 'CLSTN2', 'score': 15.57}, {'connected_gene': 'GC03P140133', 'score': 0.19}, {'connected_gene': 'GC03P140132', 'score': 0.19}, {'connected_gene': 'GC03P140312', 'score': 0.14}]
chr3	GH03I139952	139952782	139954021	0.43	[{'connected_gene': 'CLSTN2', 'score': 0.37}, {'connected_gene': 'GC03P139907', 'score': 0.25}, {'connected_gene': 'GC03M139907', 'score': 0.2}, {'connected_gene': 'GC03P139858', 'score': 0.16}]
chr3	GH03I139935	139934800	139935401	1.61	[{'connected_gene': 'CLSTN2', 'score': 561.61}, {'connected_gene': 'GC03P139907', 'score': 0.31}, {'connected_gene': 'GC03P139858', 'score': 0.18}, {'connected_gene': 'GC03M139907', 'score': 0.17}]
chr3	GH03I139763	139763898	139765802	0.4	[{'connected_gene': 'NMNAT3', 'score': 5.91}, {'connected_gene': 'CLSTN2', 'score': 4.7}, {'connected_gene': 'ENSG00000251471', 'score': 0.19}, {'connected_gene': 'GC03P139691', 'score': 0.19}, {'connected_gene': 'PIR55855', 'score': 0.19}]
chr3	GH03I140509	140509699	140509848	0.2	[{'connected_gene': 'CLSTN2-AS1', 'score': 550.77}, {'connected_gene': 'GC03P140509', 'score': 550.77}, {'connected_gene': 'ENSG00000249290', 'score': 9.77}, {'connected_gene': 'GC03P140571', 'score': 0.21}, {'connected_gene': 'CLSTN2', 'score': 0.03}]
chr3	GH03I140527	140527732	140531249	0.54	[{'connected_gene': 'CLSTN2-AS1', 'score': 11.8}, {'connected_gene': 'GC03P140509', 'score': 0.37}, {'connected_gene': 'GC03P140571', 'score': 0.26}, {'connected_gene': 'CLSTN2', 'score': 0.03}]
chr3	GH03I140466	140466652	140468180	1.13	[{'connected_gene': 'CLSTN2-AS1', 'score': 10.68}, {'connected_gene': 'ENSG00000251058', 'score': 0.77}, {'connected_gene': 'LOC105374132', 'score': 0.44}, {'connected_gene': 'CLSTN2', 'score': 0.03}]
chr3	GH03I139835	139835342	139837576	0.2	[{'connected_gene': 'ENSG00000251471', 'score': 550.77}, {'connected_gene': 'CLSTN2', 'score': 4.33}, {'connected_gene': 'GC03P139691', 'score': 0.11}, {'connected_gene': 'PIR55855', 'score': 0.11}]
chr3	GH03I140359	140359138	140359495	0.52	[{'connected_gene': 'ENSG00000249290', 'score': 10.26}, {'connected_gene': 'CLSTN2', 'score': 1.96}, {'connected_gene': 'GC03P140378', 'score': 0.37}, {'connected_gene': 'GC03P140312', 'score': 0.25}]
chr3	GH03I139914	139914757	139915126	0.22	[{'connected_gene': 'GC03P139907', 'score': 0.44}, {'connected_gene': 'CLSTN2', 'score': 0.34}, {'connected_gene': 'GC03P139858', 'score': 0.22}, {'connected_gene': 'GC03M139907', 'score': 0.14}]
chr3	GH03I140298	140298519	140298908	0.31	[{'connected_gene': 'GC03P140312', 'score': 0.39}, {'connected_gene': 'GC03P140133', 'score': 0.1}, {'connected_gene': 'GC03P140132', 'score': 0.1}, {'connected_gene': 'CLSTN2', 'score': 0.05}]
chr3	GH03I140384	140384159	140384308	0.31	[{'connected_gene': 'GC03P140378', 'score': 0.44}, {'connected_gene': 'GC03P140419', 'score': 0.28}, {'connected_gene': 'CLSTN2', 'score': 0.05}]
chr3	GH03I140204	140203864	140205984	0.77	[{'connected_gene': 'GC03P140133', 'score': 0.19}, {'connected_gene': 'GC03P140132', 'score': 0.19}, {'connected_gene': 'GC03P140312', 'score': 0.14}, {'connected_gene': 'CLSTN2', 'score': 0.06}]
chr3	GH03I140420	140420105	140421583	0.31	[{'connected_gene': 'GC03P140419', 'score': 550.77}, {'connected_gene': 'ENSG00000251058', 'score': 10.58}, {'connected_gene': 'ENSG00000249290', 'score': 10.45}, {'connected_gene': 'CLSTN2', 'score': 0.04}]
chr3	GH03I140423	140423401	140424000	0.2	[{'connected_gene': 'ENSG00000249290', 'score': 11.54}, {'connected_gene': 'GC03P140419', 'score': 0.77}, {'connected_gene': 'CLSTN2', 'score': 0.04}]
chr3	GH03I140158	140158607	140159931	0.38	[{'connected_gene': 'GC03P140133', 'score': 0.31}, {'connected_gene': 'GC03P140132', 'score': 0.31}, {'connected_gene': 'GC03P140312', 'score': 0.1}, {'connected_gene': 'CLSTN2', 'score': 0.07}]
chr3	GH03I140185	140185689	140188233	1.07	[{'connected_gene': 'GC03P140133', 'score': 0.23}, {'connected_gene': 'GC03P140132', 'score': 0.23}, {'connected_gene': 'GC03P140312', 'score': 0.13}, {'connected_gene': 'CLSTN2', 'score': 0.07}]
chr3	GH03I140440	140440615	140441694	0.46	[{'connected_gene': 'ENSG00000251058', 'score': 11.71}, {'connected_gene': 'ENSG00000249290', 'score': 0.37}, {'connected_gene': 'GC03P140419', 'score': 0.34}, {'connected_gene': 'CLSTN2', 'score': 0.03}]
chr3	GH03I140203	140203639	140203828	0.79	[{'connected_gene': 'GC03P140133', 'score': 0.19}, {'connected_gene': 'GC03P140132', 'score': 0.19}, {'connected_gene': 'GC03P140312', 'score': 0.14}, {'connected_gene': 'CLSTN2', 'score': 0.06}]
chr3	GH03I140163	140163532	140168538	0.69	[{'connected_gene': 'GC03P140133', 'score': 0.29}, {'connected_gene': 'GC03P140132', 'score': 0.29}, {'connected_gene': 'GC03P140312', 'score': 0.11}, {'connected_gene': 'CLSTN2', 'score': 0.07}]
chr3	GH03I140394	140394919	140395068	0.2	[{'connected_gene': 'ENSG00000249290', 'score': 11.17}, {'connected_gene': 'GC03P140378', 'score': 0.37}, {'connected_gene': 'GC03P140419', 'score': 0.34}, {'connected_gene': 'CLSTN2', 'score': 0.05}]
chr3	GH03I140242	140242395	140243723	0.62	[{'connected_gene': 'ENSG00000214280', 'score': 10.09}, {'connected_gene': 'GC03P140312', 'score': 0.2}, {'connected_gene': 'GC03P140133', 'score': 0.14}, {'connected_gene': 'GC03P140132', 'score': 0.14}, {'connected_gene': 'CLSTN2', 'score': 0.06}]
chr3	GH03I140385	140384495	140387274	0.67	[{'connected_gene': 'GC03P140378', 'score': 0.44}, {'connected_gene': 'GC03P140419', 'score': 0.29}, {'connected_gene': 'CLSTN2', 'score': 0.05}]
chr3	GH03I140234	140234018	140234950	0.43	[{'connected_gene': 'GC03P140312', 'score': 0.18}, {'connected_gene': 'GC03P140133', 'score': 0.15}, {'connected_gene': 'GC03P140132', 'score': 0.15}, {'connected_gene': 'CLSTN2', 'score': 0.06}]
chr3	GH03I140341	140341277	140342979	0.63	[{'connected_gene': 'GC03P140312', 'score': 0.31}, {'connected_gene': 'GC03P140378', 'score': 0.28}, {'connected_gene': 'CLSTN2', 'score': 0.05}]
chr3	GH03I140378	140378363	140379614	0.2	[{'connected_gene': 'GC03P140378', 'score': 550.77}, {'connected_gene': 'GC03P140419', 'score': 0.26}, {'connected_gene': 'CLSTN2', 'score': 0.04}]
chr3	GH03I140160	140160298	140163327	0.64	[{'connected_gene': 'GC03P140133', 'score': 0.31}, {'connected_gene': 'GC03P140132', 'score': 0.31}, {'connected_gene': 'GC03P140312', 'score': 0.1}, {'connected_gene': 'CLSTN2', 'score': 0.07}]
chr3	GH03I140169	140169934	140171478	0.66	[{'connected_gene': 'GC03P140133', 'score': 0.28}, {'connected_gene': 'GC03P140132', 'score': 0.28}, {'connected_gene': 'GC03P140312', 'score': 0.11}, {'connected_gene': 'CLSTN2', 'score': 0.07}]
chr3	GH03I140251	140251859	140252008	0.31	[{'connected_gene': 'GC03P140312', 'score': 0.21}, {'connected_gene': 'GC03P140133', 'score': 0.13}, {'connected_gene': 'GC03P140132', 'score': 0.13}, {'connected_gene': 'CLSTN2', 'score': 0.06}]
chr3	GH03I140523	140523074	140524314	0.2	[{'connected_gene': 'ENSG00000251058', 'score': 9.87}, {'connected_gene': 'GC03P140509', 'score': 0.39}, {'connected_gene': 'GC03P140571', 'score': 0.25}, {'connected_gene': 'CLSTN2', 'score': 0.03}]
chr3	GH03I140291	140291330	140293468	0.2	[{'connected_gene': 'GC03P140312', 'score': 0.34}, {'connected_gene': 'GC03P140133', 'score': 0.1}, {'connected_gene': 'GC03P140132', 'score': 0.1}, {'connected_gene': 'CLSTN2', 'score': 0.05}]