PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000261731	[[113899838, 113901362], [113905060, 113905226], [113905931, 113906209], [113906926, 113907150], [113909130, 113909877]]	[[113900994, 113901362], [113905060, 113905226], [113905931, 113906209], [113906926, 113907150], [113909130, 113909303]]
ENST00000557836	[[113909287, 113909814], [113909899, 113910085]]	None
NM_022363	[[113900693, 113901362], [113905060, 113905226], [113905931, 113906209], [113906926, 113907150], [113909130, 113909877]]	[[113900994, 113901362], [113905060, 113905226], [113905931, 113906209], [113906926, 113907150], [113909130, 113909303]]

Promoter

Chrom	Start	End	Description
chr12	113909667	113909681	CAGE_peak_1_at_LHX5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I113463	113463496	113463605	0.46	[{'connected_gene': 'RBM19', 'score': 14.32}, {'connected_gene': 'LHX5-AS1', 'score': 0.44}, {'connected_gene': 'LHX5', 'score': 0.44}, {'connected_gene': 'SDS', 'score': 0.28}]
chr12	GH12I113896	113896296	113896445	0.43	[{'connected_gene': 'LHX5', 'score': 10.42}, {'connected_gene': 'GC12P113919', 'score': 0.34}, {'connected_gene': 'GC12P113854', 'score': 0.26}, {'connected_gene': 'RBM19', 'score': 0.19}]
chr12	GH12I113912	113912816	113912965	0.62	[{'connected_gene': 'LHX5', 'score': 10.46}, {'connected_gene': 'SDSL', 'score': 10.04}, {'connected_gene': 'GC12P113919', 'score': 0.44}, {'connected_gene': 'RBM19', 'score': 0.23}, {'connected_gene': 'GC12P113854', 'score': 0.22}]
chr12	GH12I113472	113472816	113473124	0.68	[{'connected_gene': 'LHX5', 'score': 552.19}, {'connected_gene': 'LHX5-AS1', 'score': 550.77}, {'connected_gene': 'SDSL', 'score': 5.81}, {'connected_gene': 'GC12M113560', 'score': 0.16}]
chr12	GH12I113473	113473916	113474125	0.43	[{'connected_gene': 'LHX5', 'score': 550.77}, {'connected_gene': 'LHX5-AS1', 'score': 0.77}, {'connected_gene': 'GC12M113560', 'score': 0.16}]
chr12	GH12I113591	113591466	113591650	1.05	[{'connected_gene': 'LHX5', 'score': 1.34}, {'connected_gene': 'GC12M113580', 'score': 0.39}, {'connected_gene': 'GC12M113572', 'score': 0.37}]
chr12	GH12I113487	113487227	113487295	0.22	[{'connected_gene': 'LHX5', 'score': 0.39}, {'connected_gene': 'GC12M113560', 'score': 0.18}]
chr12	GH12I113513	113513651	113513967	0.34	[{'connected_gene': 'LHX5', 'score': 0.26}, {'connected_gene': 'GC12M113560', 'score': 0.23}]
chr12	GH12I113500	113500458	113501365	0.38	[{'connected_gene': 'LHX5', 'score': 0.31}, {'connected_gene': 'GC12M113560', 'score': 0.21}]
chr12	GH12I113485	113485436	113485585	0.31	[{'connected_gene': 'LHX5', 'score': 0.39}, {'connected_gene': 'GC12M113560', 'score': 0.18}]
chr12	GH12I113482	113482516	113482605	0.38	[{'connected_gene': 'LHX5', 'score': 0.39}, {'connected_gene': 'GC12M113560', 'score': 0.18}]
chr12	GH12I113514	113514696	113516058	0.43	[{'connected_gene': 'LHX5', 'score': 0.26}, {'connected_gene': 'GC12M113560', 'score': 0.25}]
chr12	GH12I113403	113403601	113404600	1.43	[{'connected_gene': 'SDS', 'score': 550.34}, {'connected_gene': 'SDSL', 'score': 18.47}, {'connected_gene': 'PLBD2', 'score': 11.23}, {'connected_gene': 'LHX5', 'score': 10.0}, {'connected_gene': 'LOC105369989', 'score': 0.26}]
chr12	GH12I113407	113407925	113408400	0.62	[{'connected_gene': 'PLBD2', 'score': 10.87}, {'connected_gene': 'LHX5', 'score': 10.41}, {'connected_gene': 'SDSL', 'score': 0.39}, {'connected_gene': 'SDS', 'score': 0.37}, {'connected_gene': 'LOC105369989', 'score': 0.25}]
chr12	GH12I113476	113476996	113477680	0.43	[{'connected_gene': 'PLBD2', 'score': 6.09}, {'connected_gene': 'LHX5-AS1', 'score': 0.44}, {'connected_gene': 'LHX5', 'score': 0.44}, {'connected_gene': 'GC12M113560', 'score': 0.17}]
chr12	GH12I113465	113465276	113465425	0.49	[{'connected_gene': 'LHX5-AS1', 'score': 0.44}, {'connected_gene': 'LHX5', 'score': 0.44}, {'connected_gene': 'SDS', 'score': 0.28}]
chr12	GH12I113471	113471836	113471985	0.46	[{'connected_gene': 'LHX5-AS1', 'score': 550.77}, {'connected_gene': 'LHX5', 'score': 550.77}, {'connected_gene': 'SDS', 'score': 0.25}]
chr12	GH12I113466	113466276	113466305	0.31	[{'connected_gene': 'LHX5-AS1', 'score': 0.44}, {'connected_gene': 'LHX5', 'score': 0.44}, {'connected_gene': 'SDS', 'score': 0.28}]
chr12	GH12I113467	113467836	113467925	0.6	[{'connected_gene': 'LHX5-AS1', 'score': 0.77}, {'connected_gene': 'LHX5', 'score': 0.77}, {'connected_gene': 'SDS', 'score': 0.26}]
chr12	GH12I113468	113464516	113464645	0.38	[{'connected_gene': 'LHX5-AS1', 'score': 0.44}, {'connected_gene': 'LHX5', 'score': 0.44}, {'connected_gene': 'SDS', 'score': 0.28}]
chr12	GH12I113470	113470936	113471085	0.43	[{'connected_gene': 'LHX5-AS1', 'score': 550.77}, {'connected_gene': 'LHX5', 'score': 550.77}, {'connected_gene': 'SDS', 'score': 0.26}]
chr12	GH12I113469	113468496	113468525	0.43	[{'connected_gene': 'LHX5-AS1', 'score': 0.77}, {'connected_gene': 'LHX5', 'score': 0.77}, {'connected_gene': 'SDS', 'score': 0.26}]
chr12	GH12I113464	113464856	113464985	0.43	[{'connected_gene': 'LHX5-AS1', 'score': 0.44}, {'connected_gene': 'LHX5', 'score': 0.44}, {'connected_gene': 'SDS', 'score': 0.28}]
chr12	GH12I113462	113462476	113462625	0.78	[{'connected_gene': 'LHX5-AS1', 'score': 0.44}, {'connected_gene': 'LHX5', 'score': 0.44}, {'connected_gene': 'SDS', 'score': 0.28}]
chr12	GH12I113475	113472296	113472545	0.38	[{'connected_gene': 'LHX5-AS1', 'score': 550.77}, {'connected_gene': 'LHX5', 'score': 550.77}, {'connected_gene': 'SDSL', 'score': 5.5}, {'connected_gene': 'GC12M113560', 'score': 0.16}]
chr12	GH12I113474	113472776	113472778	0.43	[{'connected_gene': 'LHX5-AS1', 'score': 550.77}, {'connected_gene': 'LHX5', 'score': 550.77}, {'connected_gene': 'GC12M113560', 'score': 0.16}]
chr12	GH12I113480	113480176	113480325	0.77	[{'connected_gene': 'LHX5-AS1', 'score': 0.44}, {'connected_gene': 'LHX5', 'score': 0.44}, {'connected_gene': 'GC12M113560', 'score': 0.18}]