PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000447200	[[37949260, 37949282], [37951720, 37951919], [37953814, 37953880], [37953974, 37954055], [37966281, 37966376], [38064911, 38065297]]	[[37949260, 37949282], [37951720, 37951919], [37953814, 37953880], [37953974, 37954055], [37966281, 37966324]]
ENST00000436072	[[37945542, 37947266], [37949218, 37949282], [37951720, 37951919], [37953814, 37953880], [37953974, 37954055], [37955694, 37956517]]	[[37947080, 37947266], [37949218, 37949282], [37951720, 37951919], [37953814, 37953880], [37953974, 37954055], [37955694, 37956139]]
ENST00000478975	[[37946863, 37947266], [37949218, 37949441]]	None
NM_003014	[[37945533, 37947266], [37949218, 37949282], [37951720, 37951919], [37953814, 37953880], [37953974, 37954055], [37955694, 37956525]]	[[37947080, 37947266], [37949218, 37949282], [37951720, 37951919], [37953814, 37953880], [37953974, 37954055], [37955694, 37956139]]

Promoter

Chrom	Start	End	Description
chr7	37956409	37956427	CAGE_peak_1_at_SFRP4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I038211	38211707	38212589	0.31	[{'connected_gene': 'STARD3NL', 'score': 21.08}, {'connected_gene': 'TRGC2', 'score': 16.88}, {'connected_gene': 'SFRP4', 'score': 10.05}]
chr7	GH07I038215	38215216	38223417	1.24	[{'connected_gene': 'STARD3NL', 'score': 25.42}, {'connected_gene': 'TRGC2', 'score': 16.9}, {'connected_gene': 'SFRP4', 'score': 10.05}]
chr7	GH07I037974	37974099	37974248	0.83	[{'connected_gene': 'SFRP4', 'score': 10.8}, {'connected_gene': 'STARD3NL', 'score': 9.55}, {'connected_gene': 'EPDR1', 'score': 8.06}, {'connected_gene': 'LOC105375236', 'score': 0.31}, {'connected_gene': 'NME8', 'score': 0.13}]
chr7	GH07I037941	37941494	37945790	1.18	[{'connected_gene': 'SFRP4', 'score': 15.6}, {'connected_gene': 'EPDR1', 'score': 9.27}, {'connected_gene': 'TRGC1', 'score': 5.25}, {'connected_gene': 'LOC105375236', 'score': 0.22}, {'connected_gene': 'NME8', 'score': 0.15}]
chr7	GH07I037915	37915857	37917828	1.87	[{'connected_gene': 'SFRP4', 'score': 550.14}, {'connected_gene': 'EPDR1', 'score': 12.09}, {'connected_gene': 'NME8', 'score': 0.2}, {'connected_gene': 'LOC105375236', 'score': 0.17}]
chr7	GH07I037902	37901623	37902928	0.96	[{'connected_gene': 'SFRP4', 'score': 19.25}, {'connected_gene': 'EPDR1', 'score': 14.97}, {'connected_gene': 'NME8', 'score': 0.23}, {'connected_gene': 'LOC105375236', 'score': 0.15}]
chr7	GH07I037928	37928501	37931270	0.58	[{'connected_gene': 'SFRP4', 'score': 16.22}, {'connected_gene': 'EPDR1', 'score': 15.16}, {'connected_gene': 'LOC105375236', 'score': 0.19}, {'connected_gene': 'NME8', 'score': 0.18}]
chr7	GH07I037999	37999188	38001158	0.4	[{'connected_gene': 'SFRP4', 'score': 12.13}, {'connected_gene': 'EPDR1', 'score': 8.84}, {'connected_gene': 'LOC105375236', 'score': 0.77}, {'connected_gene': 'NME8', 'score': 0.1}]
chr7	GH07I037988	37988779	37988948	0.4	[{'connected_gene': 'SFRP4', 'score': 11.24}, {'connected_gene': 'EPDR1', 'score': 8.85}, {'connected_gene': 'LOC105375236', 'score': 0.39}, {'connected_gene': 'NME8', 'score': 0.11}]
chr7	GH07I037923	37923993	37925632	0.2	[{'connected_gene': 'SFRP4', 'score': 16.18}, {'connected_gene': 'EPDR1', 'score': 14.97}, {'connected_gene': 'LOC105375236', 'score': 0.18}, {'connected_gene': 'NME8', 'score': 0.18}]
chr7	GH07I037932	37932619	37933929	0.2	[{'connected_gene': 'SFRP4', 'score': 10.72}, {'connected_gene': 'EPDR1', 'score': 8.89}, {'connected_gene': 'LOC105375236', 'score': 0.2}, {'connected_gene': 'NME8', 'score': 0.18}]
chr7	GH07I037986	37986095	37988721	0.94	[{'connected_gene': 'SFRP4', 'score': 11.24}, {'connected_gene': 'EPDR1', 'score': 8.28}, {'connected_gene': 'LOC105375236', 'score': 0.37}, {'connected_gene': 'NME8', 'score': 0.12}]
chr7	GH07I037981	37981593	37983418	0.38	[{'connected_gene': 'SFRP4', 'score': 11.08}, {'connected_gene': 'EPDR1', 'score': 8.03}, {'connected_gene': 'LOC105375236', 'score': 0.34}, {'connected_gene': 'NME8', 'score': 0.12}]
chr7	GH07I038028	38028019	38028168	0.2	[{'connected_gene': 'SFRP4', 'score': 0.77}, {'connected_gene': 'LOC105375236', 'score': 0.34}, {'connected_gene': 'GC07M038038', 'score': 0.2}]
chr7	GH07I037907	37907539	37909002	0.2	[{'connected_gene': 'EPDR1', 'score': 25.06}, {'connected_gene': 'SFRP4', 'score': 9.02}, {'connected_gene': 'NME8', 'score': 0.22}, {'connected_gene': 'LOC105375236', 'score': 0.16}]
chr7	GH07I037901	37901401	37901600	0.84	[{'connected_gene': 'EPDR1', 'score': 14.46}, {'connected_gene': 'SFRP4', 'score': 10.51}, {'connected_gene': 'NME8', 'score': 0.23}, {'connected_gene': 'LOC105375236', 'score': 0.15}]
chr7	GH07I037920	37920039	37922785	1.95	[{'connected_gene': 'EPDR1', 'score': 564.01}, {'connected_gene': 'NME8', 'score': 0.19}, {'connected_gene': 'LOC105375236', 'score': 0.18}, {'connected_gene': 'SFRP4', 'score': 0.15}]
chr7	GH07I038006	38006295	38008048	0.63	[{'connected_gene': 'EPDR1', 'score': 9.04}, {'connected_gene': 'LOC105375236', 'score': 0.77}, {'connected_gene': 'SFRP4', 'score': 0.37}]
chr7	GH07I037916	37915459	37915608	0.65	[{'connected_gene': 'NME8', 'score': 0.2}, {'connected_gene': 'LOC105375236', 'score': 0.17}, {'connected_gene': 'SFRP4', 'score': 0.14}, {'connected_gene': 'EPDR1', 'score': 0.07}]
chr7	GH07I038002	38002546	38003422	0.4	[{'connected_gene': 'LOC105375236', 'score': 550.77}, {'connected_gene': 'SFRP4', 'score': 0.34}, {'connected_gene': 'NME8', 'score': 0.1}]