Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000292174 [[118754474, 118754701], [118764304, 118768508]] [[118754650, 118754701], [118764304, 118765372]]
NM_001716 [[118754474, 118754701], [118764304, 118766980]] [[118754650, 118754701], [118764304, 118765372]]
NM_032966 [[118764100, 118766980]] [[118764388, 118765372]]
Promoter
Chrom Start End Description
chr11 118754537 118754552 CAGE_peak_3_at_CXCR5_5end
chr11 118754576 118754585 CAGE_peak_4_at_CXCR5_5end
chr11 118754592 118754621 CAGE_peak_1_at_CXCR5_5end
chr11 118754625 118754644 CAGE_peak_2_at_CXCR5_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr11 GH11I118841 118841080 118842123 1.17 [{'connected_gene': 'TREHP1', 'score': 13.51}, {'connected_gene': 'CXCR5', 'score': 11.47}, {'connected_gene': 'ENSG00000245869', 'score': 11.45}, {'connected_gene': 'UPK2', 'score': 10.47}, {'connected_gene': 'BCL9L', 'score': 10.37}, {'connected_gene': 'RN7SL688P', 'score': 10.36}, {'connected_gene': 'LOC105369519', 'score': 6.5}, {'connected_gene': 'IFT46', 'score': 4.71}, {'connected_gene': 'ENSG00000201535', 'score': 0.44}]
chr11 GH11I118770 118770801 118772600 0.71 [{'connected_gene': 'TREHP1', 'score': 20.32}, {'connected_gene': 'LOC105369519', 'score': 20.24}, {'connected_gene': 'BCL9L', 'score': 10.85}, {'connected_gene': 'UPK2', 'score': 10.85}, {'connected_gene': 'RN7SL688P', 'score': 10.85}, {'connected_gene': 'CXCR5', 'score': 10.83}, {'connected_gene': 'ENSG00000245869', 'score': 10.82}, {'connected_gene': 'ENSG00000255176', 'score': 10.31}, {'connected_gene': 'PHLDB1', 'score': 10.29}, {'connected_gene': 'TREH', 'score': 8.48}, {'connected_gene': 'GC11M118779', 'score': 0.44}, {'connected_gene': 'DDX6', 'score': 0.37}, {'connected_gene': 'PIR57704', 'score': 0.34}]
chr11 GH11I118872 118872208 118873207 1.28 [{'connected_gene': 'UPK2', 'score': 11.27}, {'connected_gene': 'BCL9L', 'score': 11.03}, {'connected_gene': 'RN7SL688P', 'score': 11.02}, {'connected_gene': 'PHLDB1', 'score': 9.36}, {'connected_gene': 'TREH', 'score': 6.26}, {'connected_gene': 'CXCR5', 'score': 4.62}, {'connected_gene': 'ATP5MG', 'score': 4.06}, {'connected_gene': 'KMT2A', 'score': 3.98}, {'connected_gene': 'CCDC84', 'score': 3.96}, {'connected_gene': 'RPS25', 'score': 2.93}, {'connected_gene': 'DDX6', 'score': 2.47}, {'connected_gene': 'VPS11', 'score': 2.46}, {'connected_gene': 'H2AFX', 'score': 1.47}, {'connected_gene': 'ENSG00000201535', 'score': 0.28}]
chr11 GH11I118873 118873933 118874568 0.46 [{'connected_gene': 'UPK2', 'score': 11.27}, {'connected_gene': 'BCL9L', 'score': 11.03}, {'connected_gene': 'RN7SL688P', 'score': 11.02}, {'connected_gene': 'PHLDB1', 'score': 9.36}, {'connected_gene': 'TREH', 'score': 6.92}, {'connected_gene': 'CXCR5', 'score': 0.44}, {'connected_gene': 'ENSG00000201535', 'score': 0.28}]
chr11 GH11I118882 118882579 118886200 1.78 [{'connected_gene': 'CXCR5', 'score': 583.07}, {'connected_gene': 'TREHP1', 'score': 4.44}, {'connected_gene': 'RPS25', 'score': 3.5}, {'connected_gene': 'KMT2A', 'score': 3.49}, {'connected_gene': 'DDX6', 'score': 3.31}, {'connected_gene': 'CCDC84', 'score': 2.88}, {'connected_gene': 'ATP5MG', 'score': 2.8}, {'connected_gene': 'VPS11', 'score': 2.22}, {'connected_gene': 'ARCN1', 'score': 1.23}, {'connected_gene': 'ENSG00000245869', 'score': 0.77}]
chr11 GH11I118852 118852072 118852221 0.8 [{'connected_gene': 'CXCR5', 'score': 11.47}, {'connected_gene': 'ENSG00000245869', 'score': 11.45}, {'connected_gene': 'UPK2', 'score': 10.93}, {'connected_gene': 'BCL9L', 'score': 10.93}, {'connected_gene': 'RN7SL688P', 'score': 10.92}, {'connected_gene': 'ENSG00000201535', 'score': 0.37}]
chr11 GH11I118838 118838570 118839536 0.79 [{'connected_gene': 'CXCR5', 'score': 11.47}, {'connected_gene': 'ENSG00000245869', 'score': 11.45}, {'connected_gene': 'UPK2', 'score': 10.46}, {'connected_gene': 'BCL9L', 'score': 10.36}, {'connected_gene': 'RN7SL688P', 'score': 10.35}, {'connected_gene': 'ENSG00000201535', 'score': 0.77}]
chr11 GH11I118845 118845256 118847099 0.95 [{'connected_gene': 'CXCR5', 'score': 11.55}, {'connected_gene': 'ENSG00000245869', 'score': 11.54}, {'connected_gene': 'PHLDB1', 'score': 10.84}, {'connected_gene': 'LOC105369519', 'score': 7.84}, {'connected_gene': 'ENSG00000201535', 'score': 0.39}]
chr11 GH11I118580 118580566 118582332 0.43 [{'connected_gene': 'IFT46', 'score': 23.45}, {'connected_gene': 'PHLDB1', 'score': 11.54}, {'connected_gene': 'LOC101929089', 'score': 10.61}, {'connected_gene': 'TMEM25', 'score': 10.61}, {'connected_gene': 'TTC36', 'score': 10.27}, {'connected_gene': 'ENSG00000254873', 'score': 9.53}, {'connected_gene': 'ATP5MG', 'score': 9.52}, {'connected_gene': 'ENSG00000255384', 'score': 9.38}, {'connected_gene': 'KMT2A', 'score': 9.38}, {'connected_gene': 'ENSG00000245869', 'score': 9.19}, {'connected_gene': 'CXCR5', 'score': 9.19}, {'connected_gene': 'ARCN1', 'score': 0.44}, {'connected_gene': 'GC11P118595', 'score': 0.39}]
chr11 GH11I119015 119015746 119020375 2.06 [{'connected_gene': 'TRAPPC4', 'score': 622.84}, {'connected_gene': 'RPS25', 'score': 550.77}, {'connected_gene': 'MIR3656', 'score': 550.77}, {'connected_gene': 'PIR32149', 'score': 550.77}, {'connected_gene': 'PIR60932', 'score': 550.77}, {'connected_gene': 'GC11P119045', 'score': 550.77}, {'connected_gene': 'BCL9L', 'score': 22.3}, {'connected_gene': 'ARCN1', 'score': 19.32}, {'connected_gene': 'ENSG00000254909', 'score': 14.9}, {'connected_gene': 'UBE4A', 'score': 13.17}, {'connected_gene': 'RPL23AP64', 'score': 12.93}, {'connected_gene': 'ENSG00000254428', 'score': 11.42}, {'connected_gene': 'FOXR1', 'score': 11.2}, {'connected_gene': 'ENSG00000222529', 'score': 11.2}, {'connected_gene': 'UPK2', 'score': 11.11}, {'connected_gene': 'RNF26', 'score': 10.29}, {'connected_gene': 'RN7SL688P', 'score': 10.24}, {'connected_gene': 'CXCR5', 'score': 10.19}, {'connected_gene': 'ENSG00000245869', 'score': 10.19}, {'connected_gene': 'CCDC84', 'score': 0.34}]
chr11 GH11I118979 118979871 118981027 1.13 [{'connected_gene': 'BCL9L', 'score': 21.9}, {'connected_gene': 'TRAPPC4', 'score': 18.42}, {'connected_gene': 'ARCN1', 'score': 13.32}, {'connected_gene': 'KMT2A', 'score': 12.53}, {'connected_gene': 'ENSG00000254909', 'score': 12.48}, {'connected_gene': 'UBE4A', 'score': 11.86}, {'connected_gene': 'RN7SL688P', 'score': 11.39}, {'connected_gene': 'UPK2', 'score': 11.36}, {'connected_gene': 'RPL23AP64', 'score': 11.24}, {'connected_gene': 'DPAGT1', 'score': 11.23}, {'connected_gene': 'RPL5P30', 'score': 11.2}, {'connected_gene': 'RNF26', 'score': 11.12}, {'connected_gene': 'TREH', 'score': 10.6}, {'connected_gene': 'ENSG00000245869', 'score': 10.59}, {'connected_gene': 'CXCR5', 'score': 10.59}, {'connected_gene': 'NLRX1', 'score': 9.52}, {'connected_gene': 'FOXR1', 'score': 0.44}, {'connected_gene': 'ENSG00000280502', 'score': 0.39}]
chr11 GH11I118906 118906480 118931105 2.88 [{'connected_gene': 'BCL9L', 'score': 577.01}, {'connected_gene': 'DPAGT1', 'score': 32.47}, {'connected_gene': 'UBE4A', 'score': 28.16}, {'connected_gene': 'ENSG00000254909', 'score': 28.08}, {'connected_gene': 'RPL23AP64', 'score': 25.24}, {'connected_gene': 'ARCN1', 'score': 24.99}, {'connected_gene': 'ENSG00000254428', 'score': 23.08}, {'connected_gene': 'RNF26', 'score': 19.84}, {'connected_gene': 'CCDC84', 'score': 16.8}, {'connected_gene': 'KMT2A', 'score': 15.66}, {'connected_gene': 'CXCR5', 'score': 15.27}, {'connected_gene': 'MPZL2', 'score': 13.97}, {'connected_gene': 'DDX6', 'score': 13.42}, {'connected_gene': 'RPS25', 'score': 13.01}, {'connected_gene': 'VPS11', 'score': 12.54}, {'connected_gene': 'HMBS', 'score': 12.4}, {'connected_gene': 'ENSG00000222529', 'score': 12.22}, {'connected_gene': 'FOXR1', 'score': 12.22}, {'connected_gene': 'C2CD2L', 'score': 12.12}, {'connected_gene': 'ENSG00000255121', 'score': 11.37}, {'connected_gene': 'ENSG00000245869', 'score': 11.36}, {'connected_gene': 'JAML', 'score': 10.87}, {'connected_gene': 'HINFP', 'score': 10.27}, {'connected_gene': 'H2AFX', 'score': 10.24}, {'connected_gene': 'TRAPPC4', 'score': 9.9}, {'connected_gene': 'RPL5P30', 'score': 9.78}, {'connected_gene': 'UPK2', 'score': 3.43}, {'connected_gene': 'HYOU1', 'score': 2.91}, {'connected_gene': 'SLC37A4', 'score': 2.67}, {'connected_gene': 'PHLDB1', 'score': 2.39}, {'connected_gene': 'CBL', 'score': 2.38}, {'connected_gene': 'CCDC153', 'score': 1.67}, {'connected_gene': 'MIR4492', 'score': 0.44}, {'connected_gene': 'GC11P118898', 'score': 0.34}]
chr11 GH11I118874 118874824 118879867 1.58 [{'connected_gene': 'BCL9L', 'score': 28.47}, {'connected_gene': 'DDX6', 'score': 18.49}, {'connected_gene': 'ENSG00000254909', 'score': 18.27}, {'connected_gene': 'UBE4A', 'score': 17.44}, {'connected_gene': 'ARCN1', 'score': 16.84}, {'connected_gene': 'RPL23AP64', 'score': 16.82}, {'connected_gene': 'ENSG00000254428', 'score': 14.53}, {'connected_gene': 'MPZL2', 'score': 13.97}, {'connected_gene': 'DPAGT1', 'score': 13.42}, {'connected_gene': 'RPS25', 'score': 12.44}, {'connected_gene': 'TREHP1', 'score': 11.89}, {'connected_gene': 'UPK2', 'score': 11.28}, {'connected_gene': 'RN7SL688P', 'score': 11.03}, {'connected_gene': 'RNF26', 'score': 10.41}, {'connected_gene': 'PHLDB1', 'score': 9.36}, {'connected_gene': 'LOC105369519', 'score': 7.75}, {'connected_gene': 'TREH', 'score': 7.72}, {'connected_gene': 'CXCR5', 'score': 6.42}, {'connected_gene': 'CCDC84', 'score': 5.87}, {'connected_gene': 'IFT46', 'score': 4.71}, {'connected_gene': 'TRAPPC4', 'score': 4.54}, {'connected_gene': 'CBL', 'score': 4.45}, {'connected_gene': 'KMT2A', 'score': 4.01}, {'connected_gene': 'VPS11', 'score': 2.82}, {'connected_gene': 'CCDC153', 'score': 1.72}, {'connected_gene': 'ENSG00000201535', 'score': 0.26}]
chr11 GH11I118810 118810005 118815292 0.38 [{'connected_gene': 'DDX6', 'score': 11.23}, {'connected_gene': 'CXCR5', 'score': 11.17}, {'connected_gene': 'ENSG00000245869', 'score': 11.16}, {'connected_gene': 'UPK2', 'score': 10.65}, {'connected_gene': 'FOXR1', 'score': 10.62}, {'connected_gene': 'ENSG00000222529', 'score': 10.62}, {'connected_gene': 'BCL9L', 'score': 10.57}, {'connected_gene': 'RN7SL688P', 'score': 10.56}, {'connected_gene': 'PHLDB1', 'score': 9.69}, {'connected_gene': 'TREH', 'score': 8.83}, {'connected_gene': 'LOC105369519', 'score': 8.76}, {'connected_gene': 'ENSG00000254478', 'score': 0.44}, {'connected_gene': 'GC11P118797', 'score': 0.37}]
chr11 GH11I118880 118880072 118882265 0.2 [{'connected_gene': 'DDX6', 'score': 4.56}, {'connected_gene': 'CXCR5', 'score': 0.77}, {'connected_gene': 'ENSG00000201535', 'score': 0.25}]
chr11 GH11I118868 118868044 118871564 1.52 [{'connected_gene': 'DDX6', 'score': 26.33}, {'connected_gene': 'CCDC84', 'score': 16.15}, {'connected_gene': 'TREHP1', 'score': 13.36}, {'connected_gene': 'UPK2', 'score': 11.27}, {'connected_gene': 'FOXR1', 'score': 11.2}, {'connected_gene': 'ENSG00000222529', 'score': 11.2}, {'connected_gene': 'BCL9L', 'score': 11.02}, {'connected_gene': 'RN7SL688P', 'score': 11.0}, {'connected_gene': 'ENSG00000255176', 'score': 10.55}, {'connected_gene': 'PHLDB1', 'score': 10.54}, {'connected_gene': 'ENSG00000255121', 'score': 10.54}, {'connected_gene': 'NLRX1', 'score': 9.17}, {'connected_gene': 'TREH', 'score': 7.43}, {'connected_gene': 'CXCR5', 'score': 6.99}, {'connected_gene': 'CBL', 'score': 6.14}, {'connected_gene': 'KMT2A', 'score': 2.93}, {'connected_gene': 'VPS11', 'score': 2.16}, {'connected_gene': 'RPS25', 'score': 1.61}, {'connected_gene': 'CCDC153', 'score': 1.23}, {'connected_gene': 'ENSG00000201535', 'score': 0.29}]
chr11 GH11I118787 118787466 118793817 2.29 [{'connected_gene': 'DDX6', 'score': 556.82}, {'connected_gene': 'PIR33268', 'score': 550.77}, {'connected_gene': 'GC11M118786', 'score': 550.77}, {'connected_gene': 'GC11P118793', 'score': 550.77}, {'connected_gene': 'PIR35418', 'score': 550.77}, {'connected_gene': 'ENSG00000278376', 'score': 550.77}, {'connected_gene': 'GC11P118796', 'score': 550.77}, {'connected_gene': 'LOC105369519', 'score': 22.96}, {'connected_gene': 'CXCR5', 'score': 11.56}, {'connected_gene': 'ENSG00000245869', 'score': 11.55}, {'connected_gene': 'UPK2', 'score': 10.88}, {'connected_gene': 'ENSG00000222529', 'score': 10.86}, {'connected_gene': 'FOXR1', 'score': 10.86}, {'connected_gene': 'BCL9L', 'score': 10.4}, {'connected_gene': 'RN7SL688P', 'score': 10.4}, {'connected_gene': 'TREHP1', 'score': 9.78}, {'connected_gene': 'TREH', 'score': 8.46}, {'connected_gene': 'IFT46', 'score': 7.11}]
chr11 GH11I118714 118714202 118717168 1.07 [{'connected_gene': 'LOC105369519', 'score': 29.76}, {'connected_gene': 'TREH', 'score': 22.75}, {'connected_gene': 'CXCR5', 'score': 10.68}, {'connected_gene': 'ENSG00000245869', 'score': 10.68}, {'connected_gene': 'BCL9L', 'score': 10.31}, {'connected_gene': 'UPK2', 'score': 10.31}, {'connected_gene': 'RN7SL688P', 'score': 10.31}, {'connected_gene': 'PHLDB1', 'score': 10.2}, {'connected_gene': 'RNU6-376P', 'score': 0.39}, {'connected_gene': 'PIR57704', 'score': 0.28}]
chr11 GH11I118819 118819354 118823168 1.27 [{'connected_gene': 'ENSG00000254478', 'score': 550.77}, {'connected_gene': 'CXCR5', 'score': 11.36}, {'connected_gene': 'ENSG00000245869', 'score': 11.36}, {'connected_gene': 'HINFP', 'score': 10.92}, {'connected_gene': 'UPK2', 'score': 10.9}, {'connected_gene': 'ENSG00000222529', 'score': 10.87}, {'connected_gene': 'FOXR1', 'score': 10.86}, {'connected_gene': 'BCL9L', 'score': 10.36}, {'connected_gene': 'RN7SL688P', 'score': 10.36}, {'connected_gene': 'PHLDB1', 'score': 9.93}, {'connected_gene': 'TREH', 'score': 8.88}, {'connected_gene': 'LOC105369519', 'score': 8.83}, {'connected_gene': 'TREHP1', 'score': 7.34}, {'connected_gene': 'GC11P118797', 'score': 0.34}]
chr11 GH11I118886 118886402 118891273 1.33 [{'connected_gene': 'ENSG00000245869', 'score': 550.77}, {'connected_gene': 'BCL9L', 'score': 11.44}, {'connected_gene': 'UPK2', 'score': 11.44}, {'connected_gene': 'RN7SL688P', 'score': 11.42}, {'connected_gene': 'DDX6', 'score': 11.08}, {'connected_gene': 'FOXR1', 'score': 10.82}, {'connected_gene': 'ENSG00000222529', 'score': 10.82}, {'connected_gene': 'TRAPPC4', 'score': 4.88}, {'connected_gene': 'LOC105369519', 'score': 4.45}, {'connected_gene': 'GC11P118898', 'score': 0.44}, {'connected_gene': 'CXCR5', 'score': 0.44}]
chr11 GH11I118780 118780138 118781817 0.2 [{'connected_gene': 'GC11M118779', 'score': 550.77}, {'connected_gene': 'LOC105369519', 'score': 20.75}, {'connected_gene': 'CXCR5', 'score': 11.33}, {'connected_gene': 'ENSG00000245869', 'score': 11.33}, {'connected_gene': 'UPK2', 'score': 11.19}, {'connected_gene': 'ENSG00000222529', 'score': 11.16}, {'connected_gene': 'FOXR1', 'score': 11.16}, {'connected_gene': 'TREHP1', 'score': 10.88}, {'connected_gene': 'BCL9L', 'score': 10.65}, {'connected_gene': 'RN7SL688P', 'score': 10.65}, {'connected_gene': 'TREH', 'score': 10.49}, {'connected_gene': 'TTC36', 'score': 8.74}, {'connected_gene': 'GC11P118786', 'score': 0.44}, {'connected_gene': 'DDX6', 'score': 0.39}]
chr11 GH11I118891 118891716 118897562 1.13 [{'connected_gene': 'GC11P118898', 'score': 550.77}, {'connected_gene': 'LOC105369519', 'score': 4.45}, {'connected_gene': 'ENSG00000245869', 'score': 0.44}, {'connected_gene': 'CXCR5', 'score': 0.39}, {'connected_gene': 'BCL9L', 'score': 0.29}]
chr11 GH11I118776 118776646 118779076 0.49 [{'connected_gene': 'GC11M118779', 'score': 550.77}, {'connected_gene': 'LOC105369519', 'score': 20.44}, {'connected_gene': 'TREH', 'score': 18.81}, {'connected_gene': 'CXCR5', 'score': 11.18}, {'connected_gene': 'ENSG00000245869', 'score': 11.18}, {'connected_gene': 'TTC36', 'score': 8.74}, {'connected_gene': 'DDX6', 'score': 0.39}, {'connected_gene': 'PIR57704', 'score': 0.31}]

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