PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000367460	[[192127586, 192127886], [192128349, 192128451], [192129507, 192129569], [192150421, 192150588], [192153426, 192154945]]	[[192127767, 192127886], [192128349, 192128451], [192129507, 192129569], [192150421, 192150588], [192153426, 192153684]]
ENST00000481707	[[192127614, 192127656], [192127760, 192127886], [192128349, 192128451], [192129507, 192129569], [192130582, 192130617], [192132409, 192132786]]	None
ENST00000492967	[[192127643, 192127886], [192128349, 192128451], [192129507, 192129569], [192130582, 192130617], [192150421, 192150584]]	None
ENST00000491030	[[192127805, 192127886], [192128349, 192128451], [192129507, 192129813]]	None
NM_130782	[[192127591, 192127886], [192128349, 192128451], [192129507, 192129569], [192150421, 192150588], [192153426, 192154945]]	[[192127767, 192127886], [192128349, 192128451], [192129507, 192129569], [192150421, 192150588], [192153426, 192153684]]

Promoter

Chrom	Start	End	Description
chr1	192127472	192127475	CAGE_peak_3_at_RGS18_5end
chr1	192127578	192127613	CAGE_peak_1_at_RGS18_5end
chr1	192127639	192127652	CAGE_peak_2_at_RGS18_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I192699	192699716	192703279	1.1	[{'connected_gene': 'RGS13', 'score': 10.07}, {'connected_gene': 'RGS2', 'score': 6.06}, {'connected_gene': 'RPS27AP5', 'score': 0.39}]
chr1	GH01I192639	192639116	192641080	1.11	[{'connected_gene': 'RGS13', 'score': 27.05}, {'connected_gene': 'RGS1', 'score': 2.95}, {'connected_gene': 'RGS2', 'score': 1.35}, {'connected_gene': 'RPS27AP5', 'score': 0.18}]
chr1	GH01I192866	192866311	192866553	0.22	[{'connected_gene': 'RGS13', 'score': 14.1}, {'connected_gene': 'RGS1', 'score': 1.68}, {'connected_gene': 'RN7SKP126', 'score': 0.44}, {'connected_gene': 'LOC105371667', 'score': 0.39}, {'connected_gene': 'GC01P192837', 'score': 0.31}]
chr1	GH01I192614	192614337	192614348	0.39	[{'connected_gene': 'RGS13', 'score': 11.41}, {'connected_gene': 'RGS1', 'score': 1.43}, {'connected_gene': 'LOC105371664', 'score': 0.39}, {'connected_gene': 'GC01P192596', 'score': 0.37}]
chr1	GH01I192763	192763627	192764317	0.71	[{'connected_gene': 'RGS13', 'score': 7.76}, {'connected_gene': 'LOC105371665', 'score': 0.31}, {'connected_gene': 'MIR4426', 'score': 0.25}]
chr1	GH01I192611	192610211	192610360	0.69	[{'connected_gene': 'RGS13', 'score': 11.38}, {'connected_gene': 'GC01P192596', 'score': 0.39}, {'connected_gene': 'LOC105371664', 'score': 0.37}]
chr1	GH01I192610	192610671	192610820	0.69	[{'connected_gene': 'RGS13', 'score': 11.38}, {'connected_gene': 'GC01P192596', 'score': 0.39}, {'connected_gene': 'LOC105371664', 'score': 0.37}]
chr1	GH01I192173	192173201	192173600	0.2	[{'connected_gene': 'RGS18', 'score': 0.39}, {'connected_gene': 'LOC105371662', 'score': 0.2}, {'connected_gene': 'GC01P191982', 'score': 0.08}]
chr1	GH01I192160	192160201	192163200	0.46	[{'connected_gene': 'RGS18', 'score': 4.99}, {'connected_gene': 'LOC105371662', 'score': 0.18}, {'connected_gene': 'GC01P191982', 'score': 0.1}]
chr1	GH01I192157	192157629	192159643	1.54	[{'connected_gene': 'RGS18', 'score': 554.93}, {'connected_gene': 'LOC105371662', 'score': 0.18}, {'connected_gene': 'GC01P191982', 'score': 0.1}]
chr1	GH01I192168	192168000	192168400	0.2	[{'connected_gene': 'RGS18', 'score': 4.75}, {'connected_gene': 'LOC105371662', 'score': 0.19}, {'connected_gene': 'GC01P191982', 'score': 0.09}]
chr1	GH01I192146	192146504	192148942	0.43	[{'connected_gene': 'RGS18', 'score': 0.39}, {'connected_gene': 'LOC105371661', 'score': 0.26}, {'connected_gene': 'GC01P191982', 'score': 0.1}]
chr1	GH01I192133	192133271	192133848	0.38	[{'connected_gene': 'RGS18', 'score': 16.81}, {'connected_gene': 'LOC105371661', 'score': 0.31}, {'connected_gene': 'GC01P191982', 'score': 0.1}]
chr1	GH01I192123	192123176	192124893	0.8	[{'connected_gene': 'RGS18', 'score': 5.11}, {'connected_gene': 'LOC105371661', 'score': 0.37}, {'connected_gene': 'GC01P191982', 'score': 0.11}]
chr1	GH01I192636	192636109	192636168	0.61	[{'connected_gene': 'RGS13', 'score': 550.77}, {'connected_gene': 'RPS27AP5', 'score': 0.18}]
chr1	GH01I192608	192608734	192610052	1.55	[{'connected_gene': 'RGS1', 'score': 14.1}, {'connected_gene': 'RGS13', 'score': 11.38}, {'connected_gene': 'TROVE2', 'score': 2.16}, {'connected_gene': 'RGS2', 'score': 1.77}, {'connected_gene': 'GC01P192596', 'score': 0.39}, {'connected_gene': 'LOC105371664', 'score': 0.37}]
chr1	GH01I192488	192488620	192490797	1.1	[{'connected_gene': 'RGS1', 'score': 3.59}, {'connected_gene': 'RGS13', 'score': 1.68}, {'connected_gene': 'RGS2', 'score': 1.24}, {'connected_gene': 'ENSG00000236069', 'score': 0.28}, {'connected_gene': 'GC01P192448', 'score': 0.26}]
chr1	GH01I192605	192605050	192605364	1.23	[{'connected_gene': 'RGS1', 'score': 20.76}, {'connected_gene': 'LOC105371664', 'score': 11.29}, {'connected_gene': 'RGS13', 'score': 10.46}, {'connected_gene': 'TROVE2', 'score': 1.83}, {'connected_gene': 'RGS2', 'score': 1.77}, {'connected_gene': 'GC01P192596', 'score': 0.44}]
chr1	GH01I192591	192591756	192593262	0.2	[{'connected_gene': 'LOC105371664', 'score': 10.95}, {'connected_gene': 'RGS13', 'score': 10.4}, {'connected_gene': 'GC01P192596', 'score': 0.77}, {'connected_gene': 'RGS1', 'score': 0.37}]
chr1	GH01I192628	192628457	192628657	0.41	[{'connected_gene': 'LOC105371664', 'score': 550.77}, {'connected_gene': 'RGS13', 'score': 12.26}, {'connected_gene': 'RGS1', 'score': 1.85}, {'connected_gene': 'GC01P192596', 'score': 0.29}]
chr1	GH01I192225	192225503	192226396	0.54	[{'connected_gene': 'LOC105371662', 'score': 0.39}, {'connected_gene': 'RGS18', 'score': 0.2}, {'connected_gene': 'GC01P191982', 'score': 0.07}]
chr1	GH01I192169	192168748	192171655	1.1	[{'connected_gene': 'ENSG00000231767', 'score': 12.49}, {'connected_gene': 'TROVE2', 'score': 10.49}, {'connected_gene': 'ZNF101P2', 'score': 9.71}, {'connected_gene': 'RGS18', 'score': 2.4}, {'connected_gene': 'LOC105371662', 'score': 0.2}, {'connected_gene': 'GC01P191982', 'score': 0.09}]
chr1	GH01I192247	192247319	192247446	0.24	[{'connected_gene': 'ENSG00000236792', 'score': 550.77}, {'connected_gene': 'LOC647150', 'score': 550.77}, {'connected_gene': 'RGS18', 'score': 4.8}, {'connected_gene': 'LOC105371662', 'score': 0.44}, {'connected_gene': 'GC01P191982', 'score': 0.06}]
chr1	GH01I192594	192594982	192596765	0.2	[{'connected_gene': 'GC01P192596', 'score': 550.77}, {'connected_gene': 'LOC105371664', 'score': 11.43}, {'connected_gene': 'RGS1', 'score': 11.32}, {'connected_gene': 'RGS13', 'score': 10.4}]