PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000377798	[[37485931, 37486120], [37486699, 37486803], [37487859, 37487936], [37489311, 37489397], [37492653, 37492712], [37493555, 37493700], [37495165, 37495273], [37495886, 37495983], [37498087, 37498221], [37500836, 37500918], [37501709, 37501841], [37503039, 37503694]]	[[37486044, 37486120], [37486699, 37486803], [37487859, 37487936], [37489311, 37489397], [37492653, 37492712], [37493555, 37493700], [37495165, 37495273], [37495886, 37495983], [37498087, 37498221], [37500836, 37500918], [37501709, 37501841], [37503039, 37503199]]
ENST00000442009	[[37485944, 37486120], [37486699, 37486803], [37487859, 37487936], [37489311, 37489397], [37492278, 37492372], [37492653, 37492712], [37493555, 37493700], [37495165, 37495273], [37495886, 37495983], [37498087, 37498221], [37500836, 37500918], [37501709, 37501841], [37503039, 37503550]]	[[37489358, 37489397], [37492278, 37492372], [37492653, 37492712], [37493555, 37493700], [37495165, 37495273], [37495886, 37495983], [37498087, 37498221], [37500836, 37500918], [37501709, 37501841], [37503039, 37503199]]
ENST00000377792	[[37486149, 37486803], [37487859, 37487936], [37489311, 37489397], [37492653, 37492712], [37493555, 37493700], [37495165, 37495273], [37495886, 37495983], [37498087, 37498221], [37500836, 37500918], [37501709, 37501841], [37503039, 37503694]]	[[37486437, 37486803], [37487859, 37487936], [37489311, 37489397], [37492653, 37492712], [37493555, 37493700], [37495165, 37495273], [37495886, 37495983], [37498087, 37498221], [37500836, 37500918], [37501709, 37501841], [37503039, 37503199]]
NM_022490	[[37485931, 37486120], [37486699, 37486803], [37487859, 37487936], [37489311, 37489397], [37492653, 37492712], [37493555, 37493700], [37495165, 37495273], [37495886, 37495983], [37498087, 37498221], [37500836, 37500918], [37501709, 37501841], [37503039, 37503694]]	[[37486044, 37486120], [37486699, 37486803], [37487859, 37487936], [37489311, 37489397], [37492653, 37492712], [37493555, 37493700], [37495165, 37495273], [37495886, 37495983], [37498087, 37498221], [37500836, 37500918], [37501709, 37501841], [37503039, 37503199]]
NM_001282766	[[37485931, 37486120], [37486699, 37486803], [37487859, 37487936], [37489311, 37489397], [37492278, 37492372], [37492653, 37492712], [37493555, 37493700], [37495165, 37495273], [37495886, 37495983], [37498087, 37498221], [37500836, 37500918], [37501709, 37501841], [37503039, 37503694]]	[[37489358, 37489397], [37492278, 37492372], [37492653, 37492712], [37493555, 37493700], [37495165, 37495273], [37495886, 37495983], [37498087, 37498221], [37500836, 37500918], [37501709, 37501841], [37503039, 37503199]]

Promoter

Chrom	Start	End	Description
chr9	37485936	37485990	CAGE_peak_1_at_POLR1E_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I037408	37408285	37410827	1.34	[{'connected_gene': 'ZBTB5', 'score': 10.43}, {'connected_gene': 'GRHPR', 'score': 7.81}, {'connected_gene': 'PAX5', 'score': 5.14}, {'connected_gene': 'ZCCHC7', 'score': 2.21}, {'connected_gene': 'TOMM5', 'score': 1.61}, {'connected_gene': 'POLR1E', 'score': 1.46}, {'connected_gene': 'LINC01627', 'score': 0.39}, {'connected_gene': 'LOC105376035', 'score': 0.26}]
chr9	GH09I037463	37463345	37469184	2.28	[{'connected_gene': 'ZBTB5', 'score': 574.67}, {'connected_gene': 'DCAF10', 'score': 40.25}, {'connected_gene': 'EXOSC3', 'score': 40.2}, {'connected_gene': 'ZCCHC7', 'score': 31.65}, {'connected_gene': 'RPL21P83', 'score': 15.18}, {'connected_gene': 'RNF38', 'score': 12.37}, {'connected_gene': 'TRMT10B', 'score': 12.04}, {'connected_gene': 'GRHPR', 'score': 11.35}, {'connected_gene': 'TMX2P1', 'score': 11.23}, {'connected_gene': 'POLR1E', 'score': 10.12}, {'connected_gene': 'KCTD9P3', 'score': 0.39}]
chr9	GH09I037902	37902074	37905473	2.31	[{'connected_gene': 'SLC25A51', 'score': 550.77}, {'connected_gene': 'ZCCHC7', 'score': 16.42}, {'connected_gene': 'TRMT10B', 'score': 12.75}, {'connected_gene': 'TMX2P1', 'score': 11.53}, {'connected_gene': 'EXOSC3', 'score': 10.49}, {'connected_gene': 'POLR1E', 'score': 9.95}, {'connected_gene': 'PIR53315', 'score': 0.39}, {'connected_gene': 'PAICSP1', 'score': 0.31}, {'connected_gene': 'GC09M038093', 'score': 0.18}, {'connected_gene': 'ENSG00000255872', 'score': 0.1}]
chr9	GH09I037692	37692244	37693981	0.63	[{'connected_gene': 'ZCCHC7', 'score': 21.53}, {'connected_gene': 'FRMPD1', 'score': 20.43}, {'connected_gene': 'EXOSC3', 'score': 12.33}, {'connected_gene': 'DCAF10', 'score': 12.31}, {'connected_gene': 'ZBTB5', 'score': 10.73}, {'connected_gene': 'POLR1E', 'score': 10.09}, {'connected_gene': 'RPL21P83', 'score': 6.58}, {'connected_gene': 'GC09M037661', 'score': 0.29}, {'connected_gene': 'RN7SKP171', 'score': 0.29}, {'connected_gene': 'TRMT10B', 'score': 0.21}, {'connected_gene': 'ENSG00000255872', 'score': 0.05}]
chr9	GH09I038141	38141406	38142824	0.85	[{'connected_gene': 'DCAF10', 'score': 14.1}, {'connected_gene': 'ZBTB5', 'score': 12.57}, {'connected_gene': 'POLR1E', 'score': 11.47}, {'connected_gene': 'SHB', 'score': 8.01}, {'connected_gene': 'GC09P038148', 'score': 0.44}, {'connected_gene': 'PIR39865', 'score': 0.34}]
chr9	GH09I036991	36991303	36998649	1.31	[{'connected_gene': 'DCAF10', 'score': 14.08}, {'connected_gene': 'ZBTB5', 'score': 12.59}, {'connected_gene': 'POLR1E', 'score': 11.48}, {'connected_gene': 'PAX5', 'score': 11.41}, {'connected_gene': 'ZCCHC7', 'score': 10.92}, {'connected_gene': 'RPL21P83', 'score': 4.94}, {'connected_gene': 'LOC105376032', 'score': 0.44}, {'connected_gene': 'MIR4476', 'score': 0.15}]
chr9	GH09I037477	37477175	37477947	0.46	[{'connected_gene': 'KCTD9P3', 'score': 550.77}, {'connected_gene': 'ENSG00000234160', 'score': 11.22}, {'connected_gene': 'GRHPR', 'score': 10.99}, {'connected_gene': 'ZCCHC7', 'score': 10.98}, {'connected_gene': 'RPL21P83', 'score': 7.19}, {'connected_gene': 'POLR1E', 'score': 0.44}]
chr9	GH09I037485	37485062	37488539	2.21	[{'connected_gene': 'POLR1E', 'score': 580.95}, {'connected_gene': 'RPL21P83', 'score': 44.65}, {'connected_gene': 'ZCCHC7', 'score': 27.91}, {'connected_gene': 'EXOSC3', 'score': 23.7}, {'connected_gene': 'ZBTB5', 'score': 16.41}, {'connected_gene': 'FBXO10', 'score': 16.31}, {'connected_gene': 'ENSG00000234160', 'score': 12.54}, {'connected_gene': 'DCAF10', 'score': 11.04}, {'connected_gene': 'TOMM5', 'score': 10.79}, {'connected_gene': 'ENSG00000256966', 'score': 10.79}, {'connected_gene': 'TMX2P1', 'score': 9.83}, {'connected_gene': 'FRMPD1', 'score': 9.74}, {'connected_gene': 'GRHPR', 'score': 8.88}, {'connected_gene': 'GC09M037494', 'score': 0.77}]
chr9	GH09I037617	37617217	37620681	0.66	[{'connected_gene': 'POLR1E', 'score': 14.71}, {'connected_gene': 'RPL21P83', 'score': 10.66}, {'connected_gene': 'GC09M037636', 'score': 0.37}, {'connected_gene': 'FRMPD1', 'score': 0.37}, {'connected_gene': 'ENSG00000255872', 'score': 0.05}]
chr9	GH09I038175	38175604	38177083	0.69	[{'connected_gene': 'EXOSC3', 'score': 32.79}, {'connected_gene': 'ZBTB5', 'score': 32.09}, {'connected_gene': 'DCAF10', 'score': 30.13}, {'connected_gene': 'TRMT10B', 'score': 25.31}, {'connected_gene': 'ENSG00000200026', 'score': 11.8}, {'connected_gene': 'TMX2P1', 'score': 11.25}, {'connected_gene': 'RPL21P83', 'score': 10.11}, {'connected_gene': 'POLR1E', 'score': 9.69}, {'connected_gene': 'PIR59956', 'score': 0.77}, {'connected_gene': 'PIR60591', 'score': 0.37}]
chr9	GH09I037799	37799682	37802575	2.14	[{'connected_gene': 'EXOSC3', 'score': 579.34}, {'connected_gene': 'DCAF10', 'score': 561.97}, {'connected_gene': 'TRMT10B', 'score': 34.5}, {'connected_gene': 'ZBTB5', 'score': 30.73}, {'connected_gene': 'ZCCHC7', 'score': 23.66}, {'connected_gene': 'POLR1E', 'score': 20.02}, {'connected_gene': 'SLC25A51', 'score': 13.16}, {'connected_gene': 'TMX2P1', 'score': 11.37}, {'connected_gene': 'RPL21P83', 'score': 10.14}, {'connected_gene': 'ENSG00000255872', 'score': 0.06}]
chr9	GH09I037026	37026011	37038375	2.26	[{'connected_gene': 'PAX5', 'score': 573.67}, {'connected_gene': 'DCAF10', 'score': 16.92}, {'connected_gene': 'ZCCHC7', 'score': 16.56}, {'connected_gene': 'EXOSC3', 'score': 10.25}, {'connected_gene': 'POLR1E', 'score': 9.8}, {'connected_gene': 'LOC105376032', 'score': 5.76}, {'connected_gene': 'ZBTB5', 'score': 2.01}, {'connected_gene': 'LOC105376031', 'score': 0.77}]
chr9	GH09I037590	37590671	37593213	2.09	[{'connected_gene': 'TOMM5', 'score': 557.21}, {'connected_gene': 'ENSG00000256966', 'score': 550.77}, {'connected_gene': 'ZCCHC7', 'score': 27.9}, {'connected_gene': 'EXOSC3', 'score': 23.72}, {'connected_gene': 'DCAF10', 'score': 11.06}, {'connected_gene': 'TMX2P1', 'score': 9.84}, {'connected_gene': 'POLR1E', 'score': 9.09}, {'connected_gene': 'GC09P037586', 'score': 0.44}, {'connected_gene': 'ENSG00000255872', 'score': 0.04}]
chr9	GH09I037594	37593324	37593378	0.46	[{'connected_gene': 'TOMM5', 'score': 550.77}, {'connected_gene': 'ENSG00000256966', 'score': 550.77}, {'connected_gene': 'POLR1E', 'score': 9.75}, {'connected_gene': 'FRMPD1', 'score': 0.44}, {'connected_gene': 'ENSG00000255872', 'score': 0.04}]
chr9	GH09I037573	37573954	37577535	1.89	[{'connected_gene': 'FBXO10', 'score': 565.23}, {'connected_gene': 'POLR1E', 'score': 14.7}, {'connected_gene': 'ZBTB5', 'score': 6.11}, {'connected_gene': 'GC09M037564', 'score': 0.44}, {'connected_gene': 'ENSG00000256966', 'score': 0.37}]
chr9	GH09I037550	37550443	37551699	0.38	[{'connected_gene': 'FBXO10', 'score': 20.13}, {'connected_gene': 'ENSG00000234160', 'score': 12.14}, {'connected_gene': 'TOMM5', 'score': 11.43}, {'connected_gene': 'ENSG00000256966', 'score': 11.43}, {'connected_gene': 'POLR1E', 'score': 11.08}, {'connected_gene': 'FRMPD1', 'score': 10.09}, {'connected_gene': 'PIR31436', 'score': 0.39}, {'connected_gene': 'GC09M037564', 'score': 0.37}]
chr9	GH09I037482	37482404	37482593	0.88	[{'connected_gene': 'FRMPD1', 'score': 9.74}, {'connected_gene': 'POLR1E', 'score': 0.77}, {'connected_gene': 'KCTD9P3', 'score': 0.44}]
chr9	GH09I037602	37602464	37603433	0.74	[{'connected_gene': 'FRMPD1', 'score': 550.77}, {'connected_gene': 'POLR1E', 'score': 15.24}, {'connected_gene': 'TOMM5', 'score': 0.39}, {'connected_gene': 'ENSG00000255872', 'score': 0.04}]
chr9	GH09I037753	37753184	37754703	1.93	[{'connected_gene': 'TRMT10B', 'score': 565.4}, {'connected_gene': 'TMX2P1', 'score': 24.65}, {'connected_gene': 'SLC25A51', 'score': 13.1}, {'connected_gene': 'ZCCHC7', 'score': 13.02}, {'connected_gene': 'POLR1E', 'score': 11.34}, {'connected_gene': 'DCAF10', 'score': 10.86}, {'connected_gene': 'ZBTB5', 'score': 10.51}, {'connected_gene': 'EXOSC3', 'score': 10.31}, {'connected_gene': 'GC09M037773', 'score': 0.37}, {'connected_gene': 'ENSG00000255872', 'score': 0.06}]
chr9	GH09I038073	38073933	38075274	0.97	[{'connected_gene': 'LOC105376039', 'score': 550.77}, {'connected_gene': 'DCAF10', 'score': 14.11}, {'connected_gene': 'ZBTB5', 'score': 12.57}, {'connected_gene': 'POLR1E', 'score': 11.47}, {'connected_gene': 'ZCCHC7', 'score': 10.82}, {'connected_gene': 'IGFBPL1', 'score': 9.54}, {'connected_gene': 'SHB', 'score': 0.44}]
chr9	GH09I037501	37501564	37505398	0.66	[{'connected_gene': 'PIR55770', 'score': 550.77}, {'connected_gene': 'PIR31469', 'score': 550.77}, {'connected_gene': 'PIR42939', 'score': 550.77}, {'connected_gene': 'RPL21P83', 'score': 44.28}, {'connected_gene': 'POLR1E', 'score': 30.54}, {'connected_gene': 'FBXO10', 'score': 5.9}, {'connected_gene': 'ZBTB5', 'score': 5.85}]
chr9	GH09I037564	37564810	37567238	0.79	[{'connected_gene': 'GC09M037564', 'score': 550.77}, {'connected_gene': 'RPL21P83', 'score': 17.87}, {'connected_gene': 'FRMPD1', 'score': 10.21}, {'connected_gene': 'POLR1E', 'score': 6.9}, {'connected_gene': 'FBXO10', 'score': 4.83}, {'connected_gene': 'PIR31436', 'score': 0.31}, {'connected_gene': 'ENSG00000256966', 'score': 0.31}]