PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NM_001080837	[[26691289, 26691670], [26691816, 26691977], [26692142, 26692173]]	[[26691289, 26691670], [26691816, 26691977], [26692142, 26692173]]

Promoter

Chrom	Start	End	Description
chr17	26694801	26694812	CAGE_peak_5_at_SEBOX_5end
chr17	26694831	26694842	CAGE_peak_8_at_SEBOX_5end
chr17	26694940	26694949	CAGE_peak_6_at_SEBOX_5end
chr17	26694979	26695007	CAGE_peak_4_at_SEBOX_5end
chr17	26695013	26695024	CAGE_peak_7_at_SEBOX_5end
chr17	26695043	26695050	CAGE_peak_10_at_SEBOX_5end
chr17	26697257	26697268	CAGE_peak_3_at_SEBOX_5end,CAGE_peak_3_at_VTN_5end
chr17	26697276	26697303	CAGE_peak_2_at_SEBOX_5end,CAGE_peak_2_at_VTN_5end
chr17	26697304	26697335	CAGE_peak_1_at_SEBOX_5end,CAGE_peak_1_at_VTN_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I028500	28500953	28501306	0.95	[{'connected_gene': 'UNC119', 'score': 12.67}, {'connected_gene': 'PIGS', 'score': 11.5}, {'connected_gene': 'SPAG5-AS1', 'score': 11.01}, {'connected_gene': 'SGK494', 'score': 11.0}, {'connected_gene': 'SLC46A1', 'score': 10.71}, {'connected_gene': 'KIAA0100', 'score': 9.8}, {'connected_gene': 'FOXN1', 'score': 5.36}, {'connected_gene': 'SPAG5', 'score': 2.44}, {'connected_gene': 'SEBOX', 'score': 1.8}, {'connected_gene': 'TMEM97', 'score': 1.58}, {'connected_gene': 'RPL23A', 'score': 1.26}, {'connected_gene': 'SLC13A2', 'score': 0.31}, {'connected_gene': 'ENSG00000258472', 'score': 0.14}]
chr17	GH17I027950	27950810	27953014	0.54	[{'connected_gene': 'SEBOX', 'score': 13.96}, {'connected_gene': 'NOS2', 'score': 4.2}, {'connected_gene': 'LINC01992', 'score': 0.28}, {'connected_gene': 'LYRM9', 'score': 0.22}, {'connected_gene': 'GC17M027891', 'score': 0.22}]
chr17	GH17I028391	28391705	28391899	0.39	[{'connected_gene': 'SEBOX', 'score': 3.34}, {'connected_gene': 'SARM1', 'score': 1.92}, {'connected_gene': 'FOXN1', 'score': 1.63}, {'connected_gene': 'FAM222B', 'score': 1.18}, {'connected_gene': 'GC17M029117', 'score': 0.44}, {'connected_gene': 'ENSG00000279532', 'score': 0.37}]
chr17	GH17I028777	28777772	28778031	0.34	[{'connected_gene': 'SEBOX', 'score': 1.5}, {'connected_gene': 'RPL31P58', 'score': 0.34}, {'connected_gene': 'ENSG00000265840', 'score': 0.31}, {'connected_gene': 'FAM222B', 'score': 0.18}]