PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000520164	[[25699245, 25702156], [25708109, 25708277], [25715834, 25716020], [25718564, 25718742], [25718824, 25718890], [25720224, 25720313], [25744270, 25744397], [25745357, 25745488], [25747267, 25747385], [25765989, 25766071], [25890600, 25890669], [25897543, 25897617], [25898131, 25898187], [25898454, 25898518], [25899610, 25899767], [25902244, 25902913]]	[[25702124, 25702156], [25708109, 25708277], [25715834, 25716020], [25718564, 25718742], [25718824, 25718890], [25720224, 25720313], [25744270, 25744397], [25745357, 25745488], [25747267, 25747385], [25765989, 25766071], [25890600, 25890669], [25897543, 25897617], [25898131, 25898187], [25898454, 25898518], [25899610, 25899767], [25902244, 25902375]]
ENST00000408929	[[25701877, 25702156], [25708109, 25708277], [25715834, 25716020], [25718564, 25718742], [25718824, 25718890], [25720224, 25720313], [25744270, 25744397], [25745357, 25745488], [25747267, 25747385], [25765989, 25766071], [25890600, 25890669], [25897543, 25897617], [25898131, 25898187], [25898454, 25898518], [25898803, 25899004]]	[[25702124, 25702156], [25708109, 25708277], [25715834, 25716020], [25718564, 25718742], [25718824, 25718890], [25720224, 25720313], [25744270, 25744397], [25745357, 25745488], [25747267, 25747385], [25765989, 25766071], [25890600, 25890669], [25897543, 25897581]]
ENST00000535548	[[25702124, 25702156], [25708109, 25708277], [25715574, 25715670], [25715834, 25716020], [25718564, 25718742], [25718824, 25718890], [25720224, 25720313], [25744270, 25744397], [25745357, 25745432]]	[[25715596, 25715670], [25715834, 25716020], [25718564, 25718742], [25718824, 25718890], [25720224, 25720313], [25744270, 25744397], [25745357, 25745432]]
ENST00000517825	[[25888965, 25890669], [25897543, 25897617], [25898131, 25898187], [25898454, 25898518], [25899610, 25899767], [25902244, 25902694]]	None
NM_022659	[[25699245, 25702156], [25708109, 25708277], [25715834, 25716020], [25718564, 25718742], [25718824, 25718890], [25720224, 25720313], [25744270, 25744397], [25745357, 25745488], [25747267, 25747385], [25765989, 25766071], [25890600, 25890669], [25897543, 25897617], [25898131, 25898187], [25898454, 25898518], [25899610, 25899767], [25902244, 25902640]]	[[25702124, 25702156], [25708109, 25708277], [25715834, 25716020], [25718564, 25718742], [25718824, 25718890], [25720224, 25720313], [25744270, 25744397], [25745357, 25745488], [25747267, 25747385], [25765989, 25766071], [25890600, 25890669], [25897543, 25897617], [25898131, 25898187], [25898454, 25898518], [25899610, 25899767], [25902244, 25902375]]

Promoter

Chrom	Start	End	Description
chr8	25902668	25902680	CAGE_peak_3_at_EBF2_5end
chr8	25902876	25902936	CAGE_peak_1_at_EBF2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I025438	25438371	25438976	0.46	[{'connected_gene': 'DOCK5', 'score': 10.91}, {'connected_gene': 'EBF2', 'score': 4.95}, {'connected_gene': 'GC08M025389', 'score': 0.77}, {'connected_gene': 'GC08P025445', 'score': 0.44}, {'connected_gene': 'KCTD9', 'score': 0.37}]
chr8	GH08I025854	25854307	25856078	0.2	[{'connected_gene': 'EBF2', 'score': 5.32}, {'connected_gene': 'LOC102723395', 'score': 0.37}, {'connected_gene': 'ENSG00000254178', 'score': 0.37}, {'connected_gene': 'GC08M025907', 'score': 0.21}]
chr8	GH08I025880	25880543	25880891	0.22	[{'connected_gene': 'EBF2', 'score': 1.67}, {'connected_gene': 'GC08M025907', 'score': 0.28}, {'connected_gene': 'ENSG00000254178', 'score': 0.26}]
chr8	GH08I026088	26088649	26089400	0.95	[{'connected_gene': 'EBF2', 'score': 11.65}, {'connected_gene': 'GC08M026059', 'score': 0.77}, {'connected_gene': 'GC08M026088', 'score': 0.37}, {'connected_gene': 'GC08M026090', 'score': 0.37}, {'connected_gene': 'GC08M026089', 'score': 0.37}]
chr8	GH08I025893	25893248	25897115	0.91	[{'connected_gene': 'EBF2', 'score': 4.78}, {'connected_gene': 'GC08M025907', 'score': 0.34}, {'connected_gene': 'ENSG00000254178', 'score': 0.22}]
chr8	GH08I025898	25898039	25900061	0.77	[{'connected_gene': 'EBF2', 'score': 5.19}, {'connected_gene': 'GC08M025907', 'score': 0.34}, {'connected_gene': 'ENSG00000254178', 'score': 0.22}]
chr8	GH08I025903	25903602	25906447	0.31	[{'connected_gene': 'EBF2', 'score': 5.17}, {'connected_gene': 'GC08M025907', 'score': 0.39}, {'connected_gene': 'ENSG00000254178', 'score': 0.21}]
chr8	GH08I026050	26049125	26049354	0.38	[{'connected_gene': 'EBF2', 'score': 0.77}, {'connected_gene': 'GC08M026059', 'score': 0.26}]
chr8	GH08I026017	26017023	26018128	0.51	[{'connected_gene': 'EBF2', 'score': 0.31}, {'connected_gene': 'GC08M025942', 'score': 0.19}]
chr8	GH08I026005	26005679	26011059	1.32	[{'connected_gene': 'EBF2', 'score': 1.85}, {'connected_gene': 'GC08M025942', 'score': 0.21}]
chr8	GH08I026040	26040177	26041865	0.43	[{'connected_gene': 'EBF2', 'score': 0.77}, {'connected_gene': 'GC08M025942', 'score': 0.15}]
chr8	GH08I026042	26042954	26048354	1.62	[{'connected_gene': 'EBF2', 'score': 550.77}, {'connected_gene': 'GC08M026059', 'score': 0.25}]
chr8	GH08I026019	26019105	26019274	0.52	[{'connected_gene': 'EBF2', 'score': 0.31}, {'connected_gene': 'GC08M025942', 'score': 0.18}]
chr8	GH08I026049	26049425	26049574	0.31	[{'connected_gene': 'EBF2', 'score': 0.77}, {'connected_gene': 'GC08M026059', 'score': 0.26}]
chr8	GH08I026037	26037148	26037697	0.66	[{'connected_gene': 'EBF2', 'score': 0.44}, {'connected_gene': 'GC08M025942', 'score': 0.16}]
chr8	GH08I026018	26018165	26018314	0.4	[{'connected_gene': 'EBF2', 'score': 0.31}, {'connected_gene': 'GC08M025942', 'score': 0.19}]
chr8	GH08I026014	26014765	26015072	0.4	[{'connected_gene': 'EBF2', 'score': 0.29}, {'connected_gene': 'GC08M025942', 'score': 0.19}]
chr8	GH08I026032	26032172	26032365	0.2	[{'connected_gene': 'EBF2', 'score': 0.39}, {'connected_gene': 'GC08M025942', 'score': 0.17}]
chr8	GH08I025997	25997399	26000414	0.97	[{'connected_gene': 'GNRH1', 'score': 30.45}, {'connected_gene': 'ENSG00000253476', 'score': 14.57}, {'connected_gene': 'EBF2', 'score': 11.82}, {'connected_gene': 'KCTD9', 'score': 10.17}, {'connected_gene': 'GC08M025942', 'score': 0.22}]
chr8	GH08I025924	25924115	25926849	0.77	[{'connected_gene': 'GC08M025907', 'score': 0.44}, {'connected_gene': 'GC08P025935', 'score': 0.44}, {'connected_gene': 'EBF2', 'score': 0.13}]
chr8	GH08I025911	25911696	25911849	0.58	[{'connected_gene': 'GC08M025907', 'score': 0.44}, {'connected_gene': 'ENSG00000254178', 'score': 0.19}, {'connected_gene': 'EBF2', 'score': 0.12}]
chr8	GH08I025973	25973782	25978079	1.09	[{'connected_gene': 'GC08M025942', 'score': 0.29}, {'connected_gene': 'EBF2', 'score': 0.2}]
chr8	GH08I025908	25908412	25911590	0.63	[{'connected_gene': 'GC08M025907', 'score': 0.44}, {'connected_gene': 'ENSG00000254178', 'score': 0.2}, {'connected_gene': 'EBF2', 'score': 0.12}]
chr8	GH08I026078	26077845	26077994	0.38	[{'connected_gene': 'GC08M026059', 'score': 0.39}, {'connected_gene': 'EBF2', 'score': 0.29}]
chr8	GH08I025948	25948825	25948974	0.68	[{'connected_gene': 'GC08M025942', 'score': 0.44}, {'connected_gene': 'EBF2', 'score': 0.15}]
chr8	GH08I025958	25958145	25958294	0.38	[{'connected_gene': 'GC08M025942', 'score': 0.39}, {'connected_gene': 'EBF2', 'score': 0.17}]
chr8	GH08I025877	25877570	25877669	0.22	[{'connected_gene': 'ENSG00000254178', 'score': 0.28}, {'connected_gene': 'GC08M025907', 'score': 0.26}, {'connected_gene': 'EBF2', 'score': 0.1}]
chr8	GH08I025959	25958565	25959257	0.94	[{'connected_gene': 'GC08M025942', 'score': 0.37}, {'connected_gene': 'EBF2', 'score': 0.17}]
chr8	GH08I025917	25917644	25919153	0.91	[{'connected_gene': 'GC08M025907', 'score': 550.77}, {'connected_gene': 'ENSG00000254178', 'score': 0.18}, {'connected_gene': 'EBF2', 'score': 0.13}]
chr8	GH08I026077	26077605	26077734	0.31	[{'connected_gene': 'GC08M026059', 'score': 0.39}, {'connected_gene': 'EBF2', 'score': 0.29}]
chr8	GH08I025916	25916348	25917566	0.51	[{'connected_gene': 'GC08M025907', 'score': 0.77}, {'connected_gene': 'ENSG00000254178', 'score': 0.18}, {'connected_gene': 'EBF2', 'score': 0.13}]
chr8	GH08I025988	25988825	25991563	0.8	[{'connected_gene': 'GC08M025942', 'score': 0.25}, {'connected_gene': 'EBF2', 'score': 0.22}]
chr8	GH08I025981	25981893	25984564	0.69	[{'connected_gene': 'GC08M025942', 'score': 0.28}, {'connected_gene': 'EBF2', 'score': 0.21}]
chr8	GH08I026076	26076745	26076854	0.2	[{'connected_gene': 'GC08M026059', 'score': 0.39}, {'connected_gene': 'EBF2', 'score': 0.29}]
chr8	GH08I025934	25934266	25939853	1.06	[{'connected_gene': 'GC08P025935', 'score': 550.77}, {'connected_gene': 'GC08M025942', 'score': 0.44}, {'connected_gene': 'EBF2', 'score': 0.14}]
chr8	GH08I025962	25962016	25963276	0.51	[{'connected_gene': 'GC08M025942', 'score': 0.37}, {'connected_gene': 'EBF2', 'score': 0.18}]
chr8	GH08I025913	25913562	25915509	0.63	[{'connected_gene': 'GC08M025907', 'score': 0.77}, {'connected_gene': 'ENSG00000254178', 'score': 0.19}, {'connected_gene': 'EBF2', 'score': 0.12}]
chr8	GH08I025922	25922381	25923571	0.2	[{'connected_gene': 'GC08M025907', 'score': 0.77}, {'connected_gene': 'GC08P025935', 'score': 0.39}, {'connected_gene': 'EBF2', 'score': 0.13}]