PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000359660	[[107194735, 107197561], [107216737, 107216880], [107356625, 107356702], [107521817, 107521948], [107559821, 107559929], [107684099, 107684231], [107700438, 107700696], [107703531, 107703654], [107716399, 107717111]]	[[107197420, 107197561], [107216737, 107216880], [107356625, 107356702], [107521817, 107521948], [107559821, 107559929], [107684099, 107684231], [107700438, 107700618]]
ENST00000542267	[[107194745, 107197561], [107216737, 107216880], [107356625, 107356702], [107521817, 107521948], [107559821, 107559929], [107684099, 107684231], [107700438, 107700696], [107703531, 107703654], [107716399, 107717799]]	[[107197420, 107197561], [107216737, 107216880], [107356625, 107356702], [107521817, 107521948], [107559821, 107559929], [107684099, 107684231], [107700438, 107700696], [107703531, 107703654], [107716399, 107717392]]
ENST00000496714	[[107213937, 107216880], [107356625, 107356702], [107521817, 107521948], [107559821, 107559929], [107684099, 107684231], [107700438, 107700696], [107703531, 107703655]]	[[107216563, 107216880], [107356625, 107356702], [107521817, 107521948], [107559821, 107559929], [107684099, 107684231], [107700438, 107700618]]
ENST00000481160	[[107356499, 107356702], [107521817, 107521948], [107559821, 107559929], [107684099, 107684231], [107700438, 107700468]]	None
ENST00000518486	[[107700523, 107700696], [107703531, 107703654], [107716399, 107716664]]	None
NM_001163315	[[107194733, 107197561], [107216737, 107216880], [107356625, 107356702], [107521817, 107521948], [107559821, 107559929], [107684099, 107684231], [107700438, 107700696], [107703531, 107703654], [107716399, 107717799]]	[[107197420, 107197561], [107216737, 107216880], [107356625, 107356702], [107521817, 107521948], [107559821, 107559929], [107684099, 107684231], [107700438, 107700696], [107703531, 107703654], [107716399, 107717392]]

Promoter

Chrom	Start	End	Description
chr5	107703556	107703571	CAGE_peak_24_at_FBXL17_5end
chr5	107716423	107716466	CAGE_peak_9_at_FBXL17_5end
chr5	107716512	107716549	CAGE_peak_13_at_FBXL17_5end
chr5	107716825	107716836	CAGE_peak_18_at_FBXL17_5end
chr5	107717058	107717155	CAGE_peak_1_at_FBXL17_5end
chr5	107717158	107717170	CAGE_peak_10_at_FBXL17_5end
chr5	107717357	107717451	CAGE_peak_3_at_FBXL17_5end
chr5	107717465	107717513	CAGE_peak_5_at_FBXL17_5end
chr5	107717725	107717742	CAGE_peak_7_at_FBXL17_5end
chr5	107717758	107717778	CAGE_peak_4_at_FBXL17_5end
chr5	107717782	107717805	CAGE_peak_2_at_FBXL17_5end
chr5	107717811	107717830	CAGE_peak_11_at_FBXL17_5end
chr5	107717914	107717949	CAGE_peak_14_at_FBXL17_5end
chr5	107718031	107718064	CAGE_peak_6_at_FBXL17_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I108560	108560147	108562509	0.85	[{'connected_gene': 'FBXL17', 'score': 5.31}, {'connected_gene': 'GC05P108543', 'score': 0.37}, {'connected_gene': 'RPS20P3', 'score': 0.29}]
chr5	GH05I108554	108554801	108555000	0.2	[{'connected_gene': 'FBXL17', 'score': 5.7}, {'connected_gene': 'GC05P108543', 'score': 0.39}, {'connected_gene': 'RPS20P3', 'score': 0.28}]
chr5	GH05I108379	108379734	108384001	2.3	[{'connected_gene': 'FBXL17', 'score': 555.02}, {'connected_gene': 'FER', 'score': 9.82}, {'connected_gene': 'GC05P108054', 'score': 0.05}]
chr5	GH05I107964	107964162	107967275	0.89	[{'connected_gene': 'FBXL17', 'score': 9.45}, {'connected_gene': 'GC05P107897', 'score': 0.2}, {'connected_gene': 'GC05P108054', 'score': 0.17}]
chr5	GH05I108219	108219402	108219740	0.22	[{'connected_gene': 'FBXL17', 'score': 0.1}, {'connected_gene': 'GC05P108054', 'score': 0.1}]
chr5	GH05I108260	108260401	108261329	0.92	[{'connected_gene': 'FBXL17', 'score': 0.13}, {'connected_gene': 'GC05P108054', 'score': 0.08}]
chr5	GH05I108378	108378601	108378800	0.63	[{'connected_gene': 'FBXL17', 'score': 0.77}, {'connected_gene': 'GC05P108054', 'score': 0.05}]
chr5	GH05I108077	108077362	108081521	0.51	[{'connected_gene': 'FBXL17', 'score': 10.28}, {'connected_gene': 'GC05P108054', 'score': 0.34}]
chr5	GH05I108295	108295547	108296336	0.31	[{'connected_gene': 'FBXL17', 'score': 0.17}, {'connected_gene': 'GC05P108054', 'score': 0.07}]
chr5	GH05I108074	108074497	108075008	0.2	[{'connected_gene': 'FBXL17', 'score': 7.38}, {'connected_gene': 'GC05P108054', 'score': 0.37}]
chr5	GH05I108459	108459818	108460042	0.44	[{'connected_gene': 'LOC105379114', 'score': 0.44}, {'connected_gene': 'FBXL17', 'score': 0.18}]
chr5	GH05I108193	108193102	108194018	0.38	[{'connected_gene': 'GC05P108054', 'score': 0.12}, {'connected_gene': 'FBXL17', 'score': 0.09}]
chr5	GH05I108002	108002740	108003828	0.88	[{'connected_gene': 'GC05P108054', 'score': 0.23}, {'connected_gene': 'GC05P107897', 'score': 0.14}, {'connected_gene': 'FBXL17', 'score': 0.05}]
chr5	GH05I108212	108212920	108213189	0.7	[{'connected_gene': 'GC05P108054', 'score': 0.1}, {'connected_gene': 'FBXL17', 'score': 0.1}]
chr5	GH05I107997	107997720	107997869	0.31	[{'connected_gene': 'GC05P108054', 'score': 0.22}, {'connected_gene': 'GC05P107897', 'score': 0.15}, {'connected_gene': 'FBXL17', 'score': 0.05}]
chr5	GH05I107937	107937634	107938133	0.49	[{'connected_gene': 'GC05P107897', 'score': 0.26}, {'connected_gene': 'GC05P108054', 'score': 0.13}, {'connected_gene': 'FBXL17', 'score': 0.04}]
chr5	GH05I108084	108084201	108084400	0.43	[{'connected_gene': 'GC05P108054', 'score': 0.31}, {'connected_gene': 'FBXL17', 'score': 0.06}]
chr5	GH05I107938	107937300	107937449	0.38	[{'connected_gene': 'GC05P107897', 'score': 0.28}, {'connected_gene': 'GC05P108054', 'score': 0.13}, {'connected_gene': 'FBXL17', 'score': 0.04}]
chr5	GH05I107968	107968913	107969769	0.31	[{'connected_gene': 'GC05P107897', 'score': 0.19}, {'connected_gene': 'GC05P108054', 'score': 0.17}, {'connected_gene': 'FBXL17', 'score': 0.05}]
chr5	GH05I107668	107668177	107674001	2.22	[{'connected_gene': 'GC05P107669', 'score': 550.77}, {'connected_gene': 'EFNA5', 'score': 550.77}, {'connected_gene': 'FBXL17', 'score': 4.34}, {'connected_gene': 'GC05P107680', 'score': 0.44}]
chr5	GH05I107893	107893639	107894400	0.38	[{'connected_gene': 'GC05P107897', 'score': 0.77}, {'connected_gene': 'RN7SKP122', 'score': 0.18}, {'connected_gene': 'FBXL17', 'score': 0.04}]
chr5	GH05I107886	107886896	107889976	0.63	[{'connected_gene': 'GC05P107897', 'score': 0.44}, {'connected_gene': 'RN7SKP122', 'score': 0.18}, {'connected_gene': 'FBXL17', 'score': 0.04}]
chr5	GH05I107868	107868922	107870577	0.8	[{'connected_gene': 'GC05P107897', 'score': 0.31}, {'connected_gene': 'RN7SKP122', 'score': 0.22}, {'connected_gene': 'FBXL17', 'score': 0.03}]
chr5	GH05I107874	107874590	107875477	0.31	[{'connected_gene': 'GC05P107897', 'score': 0.34}, {'connected_gene': 'RN7SKP122', 'score': 0.21}, {'connected_gene': 'FBXL17', 'score': 0.03}]
chr5	GH05I107875	107875480	107876302	0.2	[{'connected_gene': 'GC05P107897', 'score': 0.34}, {'connected_gene': 'RN7SKP122', 'score': 0.2}, {'connected_gene': 'FBXL17', 'score': 0.03}]