Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000372014 [[44081193, 44081946], [44084277, 44084366], [44095080, 44095194]] [[44081579, 44081946], [44084277, 44084348]]
NM_001318770 [[44081190, 44081946], [44084277, 44084366], [44093689, 44094004]] [[44081579, 44081946], [44084277, 44084366], [44093689, 44093830]]
NM_001318769 [[44081190, 44081946], [44084277, 44084366], [44094369, 44094411]] [[44081579, 44081946], [44084277, 44084366], [44094369, 44094384]]
NM_001318768 [[44081190, 44081946], [44084277, 44084366], [44094991, 44095044]] [[44081579, 44081946], [44084277, 44084348]]
NM_032111 [[44081190, 44081946], [44084277, 44084366], [44095080, 44095228]] [[44081579, 44081946], [44084277, 44084348]]
NM_001318771 [[44081190, 44081946], [44095080, 44095228]] [[44081579, 44081915]]
NM_001318767 [[44081190, 44081946], [44084277, 44084366], [44095119, 44095228]] [[44081579, 44081946], [44084277, 44084348]]
Promoter
Chrom Start End Description
chr6 44095102 44095182 CAGE_peak_1_at_MRPL14_5end
chr6 44095183 44095209 CAGE_peak_2_at_MRPL14_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr6 GH06I044068 44068505 44069291 0.89 [{'connected_gene': 'VEGFA', 'score': 11.46}, {'connected_gene': 'MRPL14', 'score': 5.12}, {'connected_gene': 'TMEM63B', 'score': 5.01}, {'connected_gene': 'GC06M044069', 'score': 0.77}, {'connected_gene': 'LOC101929705', 'score': 0.44}, {'connected_gene': 'GC06P044013', 'score': 0.22}]
chr6 GH06I044086 44086801 44087562 0.62 [{'connected_gene': 'MRPL14', 'score': 11.1}, {'connected_gene': 'AARS2', 'score': 10.13}, {'connected_gene': 'GC06M044090', 'score': 0.77}, {'connected_gene': 'LOC101929705', 'score': 0.39}]
chr6 GH06I044125 44125704 44129031 2.2 [{'connected_gene': 'MRPL14', 'score': 570.09}, {'connected_gene': 'TMEM63B', 'score': 561.08}, {'connected_gene': 'POLH', 'score': 18.87}, {'connected_gene': 'ZNF318', 'score': 17.84}, {'connected_gene': 'XPO5', 'score': 13.85}, {'connected_gene': 'RPS2P29', 'score': 13.83}, {'connected_gene': 'POLR1C', 'score': 13.45}, {'connected_gene': 'GTPBP2', 'score': 13.31}, {'connected_gene': 'AARS2', 'score': 10.79}, {'connected_gene': 'NFKBIE', 'score': 10.52}, {'connected_gene': 'SLC35B2', 'score': 10.52}, {'connected_gene': 'ENSG00000271754', 'score': 10.49}, {'connected_gene': 'TMEM151B', 'score': 9.76}]
chr6 GH06I044094 44094004 44095812 0.93 [{'connected_gene': 'MRPL14', 'score': 31.26}, {'connected_gene': 'TMEM63B', 'score': 17.55}, {'connected_gene': 'CAPN11', 'score': 12.29}, {'connected_gene': 'VEGFA', 'score': 10.76}, {'connected_gene': 'AARS2', 'score': 10.75}, {'connected_gene': 'SLC29A1', 'score': 10.72}, {'connected_gene': 'HSP90AB1', 'score': 10.5}, {'connected_gene': 'SLC35B2', 'score': 10.38}, {'connected_gene': 'NFKBIE', 'score': 10.38}, {'connected_gene': 'TMEM151B', 'score': 10.29}, {'connected_gene': 'SPATS1', 'score': 9.7}, {'connected_gene': 'RPL29P16', 'score': 0.44}, {'connected_gene': 'PIR46189', 'score': 0.37}]
chr6 GH06I044119 44119607 44120176 0.92 [{'connected_gene': 'MRPL14', 'score': 19.8}, {'connected_gene': 'TMEM63B', 'score': 10.74}, {'connected_gene': 'PIR46189', 'score': 0.44}]
chr6 GH06I044122 44122453 44124523 1.1 [{'connected_gene': 'MRPL14', 'score': 20.15}, {'connected_gene': 'TMEM63B', 'score': 0.77}, {'connected_gene': 'PIR46189', 'score': 0.39}]
chr6 GH06I044132 44132160 44135231 1.35 [{'connected_gene': 'MRPL14', 'score': 20.87}, {'connected_gene': 'CAPN11', 'score': 11.91}, {'connected_gene': 'TMEM63B', 'score': 10.63}, {'connected_gene': 'NFKBIE', 'score': 10.44}, {'connected_gene': 'SLC35B2', 'score': 10.37}, {'connected_gene': 'CRIP3', 'score': 4.11}, {'connected_gene': 'PIR60878', 'score': 0.34}]
chr6 GH06I044114 44114113 44118674 1.21 [{'connected_gene': 'MRPL14', 'score': 21.74}, {'connected_gene': 'CAPN11', 'score': 12.05}, {'connected_gene': 'SLC29A1', 'score': 10.94}, {'connected_gene': 'HSP90AB1', 'score': 10.78}, {'connected_gene': 'TMEM63B', 'score': 10.7}, {'connected_gene': 'NFKBIE', 'score': 10.52}, {'connected_gene': 'SLC35B2', 'score': 10.41}, {'connected_gene': 'CRIP3', 'score': 5.38}, {'connected_gene': 'PIR46189', 'score': 0.44}]
chr6 GH06I044082 44082697 44083100 0.33 [{'connected_gene': 'AARS2', 'score': 10.13}, {'connected_gene': 'MRPL14', 'score': 6.7}, {'connected_gene': 'LOC101929705', 'score': 0.44}, {'connected_gene': 'GC06M044090', 'score': 0.44}]
chr6 GH06I044129 44129920 44130793 0.89 [{'connected_gene': 'AARS2', 'score': 10.79}, {'connected_gene': 'SLC35B2', 'score': 10.53}, {'connected_gene': 'NFKBIE', 'score': 10.52}, {'connected_gene': 'TMEM151B', 'score': 9.76}, {'connected_gene': 'TMEM63B', 'score': 6.86}, {'connected_gene': 'MRPL14', 'score': 0.77}, {'connected_gene': 'PIR60878', 'score': 0.34}]
chr6 GH06I044154 44154717 44157482 1.13 [{'connected_gene': 'TMEM63B', 'score': 17.27}, {'connected_gene': 'MRPL14', 'score': 7.96}, {'connected_gene': 'SRF', 'score': 5.45}, {'connected_gene': 'CAPN11', 'score': 0.77}, {'connected_gene': 'PIR60878', 'score': 0.77}]
chr6 GH06I044056 44056241 44068274 1.86 [{'connected_gene': 'POLH', 'score': 33.72}, {'connected_gene': 'GTPBP2', 'score': 33.16}, {'connected_gene': 'NFKBIE', 'score': 30.61}, {'connected_gene': 'ZNF318', 'score': 22.8}, {'connected_gene': 'MRPL14', 'score': 17.02}, {'connected_gene': 'TMEM63B', 'score': 16.44}, {'connected_gene': 'VEGFA', 'score': 13.18}, {'connected_gene': 'SLC35B2', 'score': 11.51}, {'connected_gene': 'CDC5L', 'score': 10.55}, {'connected_gene': 'ABCC10', 'score': 10.48}, {'connected_gene': 'AARS2', 'score': 9.47}, {'connected_gene': 'MAD2L1BP', 'score': 2.23}, {'connected_gene': 'GC06M044069', 'score': 0.39}, {'connected_gene': 'LOC101929705', 'score': 0.39}, {'connected_gene': 'GC06P044013', 'score': 0.25}]
chr6 GH06I044283 44283529 44283845 0.24 [{'connected_gene': 'SLC35B2', 'score': 12.41}, {'connected_gene': 'AARS2', 'score': 11.35}, {'connected_gene': 'SPATS1', 'score': 11.06}, {'connected_gene': 'TMEM63B', 'score': 10.78}, {'connected_gene': 'MRPL14', 'score': 10.78}, {'connected_gene': 'TMEM151B', 'score': 8.7}, {'connected_gene': 'TCTE1', 'score': 1.74}, {'connected_gene': 'ENSG00000272442', 'score': 0.39}]
chr6 GH06I044104 44104198 44106047 0.78 [{'connected_gene': 'ZNF318', 'score': 49.74}, {'connected_gene': 'ENSG00000271970', 'score': 48.91}, {'connected_gene': 'ABCC10', 'score': 40.61}, {'connected_gene': 'AARS2', 'score': 39.17}, {'connected_gene': 'RPL34P14', 'score': 38.62}, {'connected_gene': 'POLR1C', 'score': 36.14}, {'connected_gene': 'SLC35B2', 'score': 28.94}, {'connected_gene': 'XPO5', 'score': 20.29}, {'connected_gene': 'MRPL14', 'score': 19.62}, {'connected_gene': 'CUL9', 'score': 13.0}, {'connected_gene': 'CAPN11', 'score': 12.15}, {'connected_gene': 'HSP90AB1', 'score': 10.97}, {'connected_gene': 'POLH-AS1', 'score': 10.9}, {'connected_gene': 'TMEM63B', 'score': 10.67}, {'connected_gene': 'TJAP1', 'score': 10.63}, {'connected_gene': 'NFKBIE', 'score': 10.56}, {'connected_gene': 'TMEM151B', 'score': 10.48}, {'connected_gene': 'SLC29A1', 'score': 10.42}, {'connected_gene': 'SPATS1', 'score': 10.03}, {'connected_gene': 'PIR46189', 'score': 0.44}, {'connected_gene': 'RPL29P16', 'score': 0.37}]
chr6 GH06I044040 44040234 44045150 1.75 [{'connected_gene': 'ZNF318', 'score': 85.89}, {'connected_gene': 'ABCC10', 'score': 78.37}, {'connected_gene': 'POLH', 'score': 74.43}, {'connected_gene': 'GTPBP2', 'score': 72.18}, {'connected_gene': 'CUL7', 'score': 66.48}, {'connected_gene': 'RPS2P29', 'score': 41.83}, {'connected_gene': 'RPL34P14', 'score': 32.15}, {'connected_gene': 'XPO5', 'score': 27.58}, {'connected_gene': 'POLR1C', 'score': 22.33}, {'connected_gene': 'SLC35B2', 'score': 21.73}, {'connected_gene': 'TJAP1', 'score': 18.55}, {'connected_gene': 'MYMX', 'score': 12.66}, {'connected_gene': 'AARS2', 'score': 11.62}, {'connected_gene': 'YIPF3', 'score': 10.87}, {'connected_gene': 'ENSG00000271970', 'score': 9.72}, {'connected_gene': 'MRPL14', 'score': 2.2}, {'connected_gene': 'C6orf223', 'score': 1.77}, {'connected_gene': 'VEGFA', 'score': 1.38}, {'connected_gene': 'GC06P044013', 'score': 0.31}, {'connected_gene': 'GC06M044069', 'score': 0.29}, {'connected_gene': 'LOC101929705', 'score': 0.29}]
chr6 GH06I043758 43758584 43758753 0.95 [{'connected_gene': 'RSPH9', 'score': 11.36}, {'connected_gene': 'ABCC10', 'score': 10.67}, {'connected_gene': 'TMEM63B', 'score': 10.61}, {'connected_gene': 'MRPL14', 'score': 10.61}, {'connected_gene': 'MAD2L1BP', 'score': 10.34}, {'connected_gene': 'GTPBP2', 'score': 10.34}, {'connected_gene': 'RPL7L1', 'score': 9.67}, {'connected_gene': 'VEGFA', 'score': 0.39}, {'connected_gene': 'ENSG00000236961', 'score': 0.34}, {'connected_gene': 'GC06P043362', 'score': 0.05}]
chr6 GH06I044216 44216010 44230324 2.59 [{'connected_gene': 'SLC29A1', 'score': 564.04}, {'connected_gene': 'GTPBP2', 'score': 31.19}, {'connected_gene': 'POLH', 'score': 24.62}, {'connected_gene': 'RPS2P29', 'score': 24.3}, {'connected_gene': 'ZNF318', 'score': 21.16}, {'connected_gene': 'ABCC10', 'score': 20.02}, {'connected_gene': 'YIPF3', 'score': 19.66}, {'connected_gene': 'MYMX', 'score': 18.84}, {'connected_gene': 'SLC35B2', 'score': 11.01}, {'connected_gene': 'RPL34P14', 'score': 10.29}, {'connected_gene': 'MRPL14', 'score': 1.46}, {'connected_gene': 'GC06P044215', 'score': 0.44}, {'connected_gene': 'GC06P044236', 'score': 0.39}]
chr6 GH06I044200 44200587 44204018 1.3 [{'connected_gene': 'SLC29A1', 'score': 38.34}, {'connected_gene': 'CAPN11', 'score': 21.84}, {'connected_gene': 'HSP90AB1', 'score': 11.5}, {'connected_gene': 'NFKBIE', 'score': 10.6}, {'connected_gene': 'TMEM151B', 'score': 10.59}, {'connected_gene': 'SLC35B2', 'score': 10.55}, {'connected_gene': 'MRPL14', 'score': 10.49}, {'connected_gene': 'TMEM63B', 'score': 10.48}, {'connected_gene': 'MYMX', 'score': 5.27}, {'connected_gene': 'RN7SL811P', 'score': 0.44}]
chr6 GH06I044292 44292214 44292273 0.5 [{'connected_gene': 'TCTE1', 'score': 550.44}, {'connected_gene': 'AARS2', 'score': 12.01}, {'connected_gene': 'NFKBIE', 'score': 11.51}, {'connected_gene': 'SLC35B2', 'score': 11.49}, {'connected_gene': 'SPATS1', 'score': 10.8}, {'connected_gene': 'TMEM63B', 'score': 10.18}, {'connected_gene': 'MRPL14', 'score': 10.17}, {'connected_gene': 'SLC29A1', 'score': 10.02}, {'connected_gene': 'ENSG00000272442', 'score': 0.37}, {'connected_gene': 'TMEM151B', 'score': 0.34}]
chr6 GH06I044121 44121401 44121600 0.46 [{'connected_gene': 'TCTE1', 'score': 5.89}, {'connected_gene': 'TMEM63B', 'score': 0.44}, {'connected_gene': 'MRPL14', 'score': 0.44}, {'connected_gene': 'PIR46189', 'score': 0.39}]
chr6 GH06I044096 44096824 44096973 0.85 [{'connected_gene': 'CAPN11', 'score': 12.29}, {'connected_gene': 'TMEM63B', 'score': 11.8}, {'connected_gene': 'MRPL14', 'score': 11.78}, {'connected_gene': 'VEGFA', 'score': 10.76}, {'connected_gene': 'AARS2', 'score': 10.75}, {'connected_gene': 'SLC29A1', 'score': 10.72}, {'connected_gene': 'HSP90AB1', 'score': 10.5}, {'connected_gene': 'NFKBIE', 'score': 10.38}, {'connected_gene': 'SLC35B2', 'score': 10.38}, {'connected_gene': 'TMEM151B', 'score': 10.29}, {'connected_gene': 'SPATS1', 'score': 9.7}, {'connected_gene': 'RPL29P16', 'score': 0.44}, {'connected_gene': 'PIR46189', 'score': 0.39}]
chr6 GH06I044206 44206801 44207000 0.76 [{'connected_gene': 'CAPN11', 'score': 11.73}, {'connected_gene': 'HSP90AB1', 'score': 11.51}, {'connected_gene': 'NFKBIE', 'score': 10.61}, {'connected_gene': 'TMEM151B', 'score': 10.6}, {'connected_gene': 'SLC35B2', 'score': 10.56}, {'connected_gene': 'MRPL14', 'score': 10.48}, {'connected_gene': 'TMEM63B', 'score': 10.47}, {'connected_gene': 'RN7SL811P', 'score': 0.77}, {'connected_gene': 'MYMX', 'score': 0.39}]
chr6 GH06I044204 44204124 44204273 0.82 [{'connected_gene': 'CAPN11', 'score': 11.73}, {'connected_gene': 'HSP90AB1', 'score': 11.5}, {'connected_gene': 'NFKBIE', 'score': 10.6}, {'connected_gene': 'TMEM151B', 'score': 10.59}, {'connected_gene': 'SLC35B2', 'score': 10.56}, {'connected_gene': 'TMEM63B', 'score': 10.48}, {'connected_gene': 'MRPL14', 'score': 10.48}, {'connected_gene': 'RN7SL811P', 'score': 0.44}, {'connected_gene': 'MYMX', 'score': 0.39}]
chr6 GH06I044113 44113611 44113838 0.31 [{'connected_gene': 'CAPN11', 'score': 12.03}, {'connected_gene': 'SLC29A1', 'score': 10.93}, {'connected_gene': 'MRPL14', 'score': 10.88}, {'connected_gene': 'NFKBIE', 'score': 10.51}, {'connected_gene': 'SLC35B2', 'score': 10.41}, {'connected_gene': 'PIR46189', 'score': 0.77}, {'connected_gene': 'TMEM63B', 'score': 0.39}]
chr6 GH06I044151 44151638 44152708 1.18 [{'connected_gene': 'PIR60878', 'score': 550.77}, {'connected_gene': 'ABCC10', 'score': 24.58}, {'connected_gene': 'ZNF318', 'score': 14.0}, {'connected_gene': 'GTPBP2', 'score': 12.7}, {'connected_gene': 'POLH', 'score': 11.95}, {'connected_gene': 'RPS2P29', 'score': 11.9}, {'connected_gene': 'TMEM63B', 'score': 11.89}, {'connected_gene': 'RPL34P14', 'score': 11.46}, {'connected_gene': 'CUL9', 'score': 10.93}, {'connected_gene': 'AARS2', 'score': 10.4}, {'connected_gene': 'MRPL14', 'score': 0.34}]
chr6 GH06I044109 44109559 44113435 1.11 [{'connected_gene': 'PIR46189', 'score': 550.77}, {'connected_gene': 'MRPL14', 'score': 19.72}, {'connected_gene': 'CAPN11', 'score': 12.03}, {'connected_gene': 'SLC29A1', 'score': 10.93}, {'connected_gene': 'TMEM63B', 'score': 10.78}, {'connected_gene': 'NFKBIE', 'score': 10.51}, {'connected_gene': 'SLC35B2', 'score': 10.41}, {'connected_gene': 'CRIP3', 'score': 4.19}]
chr6 GH06I044236 44236719 44239089 1.79 [{'connected_gene': 'GC06P044236', 'score': 550.77}, {'connected_gene': 'NFKBIE', 'score': 14.94}, {'connected_gene': 'CAPN11', 'score': 11.41}, {'connected_gene': 'TMEM63B', 'score': 11.14}, {'connected_gene': 'MRPL14', 'score': 11.14}, {'connected_gene': 'AARS2', 'score': 10.62}, {'connected_gene': 'SPATS1', 'score': 10.26}, {'connected_gene': 'RPL34P14', 'score': 9.97}, {'connected_gene': 'HSP90AB1', 'score': 5.82}, {'connected_gene': 'SLC29A1', 'score': 5.44}, {'connected_gene': 'VEGFA', 'score': 1.27}]
chr6 GH06I044071 44071244 44077836 2.08 [{'connected_gene': 'GC06M044069', 'score': 550.77}, {'connected_gene': 'LOC101929705', 'score': 550.77}, {'connected_gene': 'ENSG00000231881', 'score': 550.77}, {'connected_gene': 'ZNF318', 'score': 30.86}, {'connected_gene': 'GTPBP2', 'score': 30.12}, {'connected_gene': 'POLH', 'score': 28.64}, {'connected_gene': 'ABCC10', 'score': 26.14}, {'connected_gene': 'VEGFA', 'score': 14.42}, {'connected_gene': 'RPS2P29', 'score': 13.48}, {'connected_gene': 'RPL34P14', 'score': 12.93}, {'connected_gene': 'AARS2', 'score': 11.63}, {'connected_gene': 'YIPF3', 'score': 11.38}, {'connected_gene': 'SLC35B2', 'score': 10.58}, {'connected_gene': 'CDC5L', 'score': 10.55}, {'connected_gene': 'SPATS1', 'score': 9.76}, {'connected_gene': 'PTK7', 'score': 9.68}, {'connected_gene': 'MRPL14', 'score': 7.3}, {'connected_gene': 'TMEM63B', 'score': 5.29}, {'connected_gene': 'NFKBIE', 'score': 4.84}, {'connected_gene': 'C6orf223', 'score': 1.86}, {'connected_gene': 'MAD2L1BP', 'score': 1.47}]

© 2018 bmi.sjtu.edu.cn. All rights reserved.
浙ICP备18030141号.