PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000373116	[[36921318, 36921526], [36921787, 36921979], [36923523, 36923582], [36926292, 36926377], [36926864, 36926913], [36927688, 36927764], [36929406, 36929451], [36929746, 36930038]]	[[36921388, 36921526], [36921787, 36921979], [36923523, 36923582], [36926292, 36926377], [36926864, 36926913], [36927688, 36927764], [36929406, 36929451], [36929746, 36929876]]
ENST00000488606	[[36921372, 36921526], [36921787, 36921979], [36923523, 36925304]]	None
ENST00000477040	[[36921373, 36921526], [36921787, 36922167]]	None
ENST00000462067	[[36921374, 36921526], [36921787, 36921979], [36923523, 36924727], [36929882, 36929946]]	None
NM_031280	[[36921361, 36921526], [36921787, 36921979], [36923523, 36923582], [36926292, 36926377], [36926864, 36926913], [36927688, 36927764], [36929406, 36929451], [36929746, 36930040]]	[[36921388, 36921526], [36921787, 36921979], [36923523, 36923582], [36926292, 36926377], [36926864, 36926913], [36927688, 36927764], [36929406, 36929451], [36929746, 36929876]]

Promoter

Chrom	Start	End	Description
chr1	36921824	36921829	CAGE_peak_9_at_MRPS15_5end
chr1	36921851	36921874	CAGE_peak_6_at_MRPS15_5end
chr1	36929813	36929867	CAGE_peak_5_at_MRPS15_5end
chr1	36929871	36929891	CAGE_peak_3_at_MRPS15_5end
chr1	36929919	36929932	CAGE_peak_2_at_MRPS15_5end
chr1	36929936	36929999	CAGE_peak_1_at_MRPS15_5end
chr1	36930012	36930026	CAGE_peak_4_at_MRPS15_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I036516	36516440	36516589	0.75	[{'connected_gene': 'THRAP3', 'score': 12.3}, {'connected_gene': 'LOC105378647', 'score': 12.16}, {'connected_gene': 'CSF3R', 'score': 12.05}, {'connected_gene': 'MRPS15', 'score': 11.99}, {'connected_gene': 'EVA1B', 'score': 11.19}, {'connected_gene': 'OSCP1', 'score': 10.77}, {'connected_gene': 'GC01M036518', 'score': 0.37}]
chr1	GH01I036463	36463200	36466142	2.15	[{'connected_gene': 'MRPS15', 'score': 550.77}, {'connected_gene': 'AGO3', 'score': 22.88}, {'connected_gene': 'THRAP3', 'score': 21.87}, {'connected_gene': 'LOC105378647', 'score': 19.0}, {'connected_gene': 'TRAPPC3', 'score': 13.33}, {'connected_gene': 'STK40', 'score': 13.01}, {'connected_gene': 'OSCP1', 'score': 12.82}, {'connected_gene': 'EVA1B', 'score': 10.12}, {'connected_gene': 'CSF3R', 'score': 0.37}]
chr1	GH01I036489	36489600	36489749	0.71	[{'connected_gene': 'MRPS15', 'score': 12.14}, {'connected_gene': 'OSCP1', 'score': 10.84}, {'connected_gene': 'SNORA63C', 'score': 10.25}, {'connected_gene': 'CSF3R', 'score': 0.44}, {'connected_gene': 'GC01M036518', 'score': 0.26}]
chr1	GH01I036484	36484954	36489119	1.44	[{'connected_gene': 'CSF3R', 'score': 46.65}, {'connected_gene': 'OSCP1', 'score': 15.51}, {'connected_gene': 'MRPS15', 'score': 12.17}, {'connected_gene': 'SNORA63C', 'score': 10.26}, {'connected_gene': 'THRAP3', 'score': 9.01}, {'connected_gene': 'STK40', 'score': 8.77}, {'connected_gene': 'MAP7D1', 'score': 5.05}, {'connected_gene': 'SH3D21', 'score': 1.44}, {'connected_gene': 'LSM10', 'score': 1.41}, {'connected_gene': 'GC01M036518', 'score': 0.25}]
chr1	GH01I036481	36481141	36483900	1.75	[{'connected_gene': 'CSF3R', 'score': 550.77}, {'connected_gene': 'OSCP1', 'score': 17.96}, {'connected_gene': 'SNORA63C', 'score': 10.59}, {'connected_gene': 'MRPS15', 'score': 0.37}]
chr1	GH01I036457	36457601	36459259	0.77	[{'connected_gene': 'OSCP1', 'score': 11.42}, {'connected_gene': 'LSM10', 'score': 10.47}, {'connected_gene': 'GC01P036455', 'score': 0.77}, {'connected_gene': 'MRPS15', 'score': 0.44}]
chr1	GH01I036474	36474818	36474896	0.22	[{'connected_gene': 'OSCP1', 'score': 11.33}, {'connected_gene': 'SNORA63C', 'score': 10.6}, {'connected_gene': 'CSF3R', 'score': 3.01}, {'connected_gene': 'MRPS15', 'score': 0.39}]