PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000469416	[[40915773, 40915847], [40916327, 40916760], [40919874, 40919960], [40922616, 40923111], [40928092, 40929386]]	None
ENST00000484445	[[40915778, 40915847], [40916336, 40916760], [40922616, 40922743], [40923015, 40923111], [40928092, 40929352]]	[[40916633, 40916760], [40922616, 40922743], [40923015, 40923111], [40928092, 40928138]]
ENST00000361584	[[40915778, 40915847], [40916336, 40916760], [40922616, 40922743], [40923015, 40923111], [40928092, 40929352]]	[[40922709, 40922743], [40923015, 40923111], [40928092, 40929261]]
ENST00000411995	[[40915778, 40915847], [40916327, 40916760], [40919874, 40919960], [40922616, 40922743], [40923015, 40923111], [40928092, 40929390]]	[[40916633, 40916760], [40919874, 40919960], [40922616, 40922743], [40923015, 40923111], [40928092, 40929261]]
NM_023070	[[40916336, 40916760], [40919874, 40919960], [40922616, 40922743], [40923015, 40923111], [40928092, 40929390]]	[[40916633, 40916760], [40919874, 40919960], [40922616, 40922743], [40923015, 40923111], [40928092, 40929261]]

Promoter

Chrom	Start	End	Description
chr1	40915725	40915808	CAGE_peak_1_at_ZNF643_5end
chr1	40916143	40916164	CAGE_peak_6_at_ZNF643_5end
chr1	40916251	40916260	CAGE_peak_7_at_ZNF643_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I040449	40449333	40451846	2.06	[{'connected_gene': 'ZFP69B', 'score': 550.77}, {'connected_gene': 'ENSG00000284677', 'score': 550.77}, {'connected_gene': 'LOC105378672', 'score': 18.27}, {'connected_gene': 'ZFP69', 'score': 13.66}, {'connected_gene': 'EXO5', 'score': 12.2}, {'connected_gene': 'ENSG00000227278', 'score': 11.64}, {'connected_gene': 'ENSG00000238186', 'score': 11.64}, {'connected_gene': 'ZNF684', 'score': 10.68}, {'connected_gene': 'OXCT2', 'score': 5.5}, {'connected_gene': 'ENSG00000260920', 'score': 0.39}]
chr1	GH01I040413	40413402	40415139	0.84	[{'connected_gene': 'SMAP2', 'score': 21.62}, {'connected_gene': 'ZFP69B', 'score': 12.0}, {'connected_gene': 'COL9A2', 'score': 11.49}, {'connected_gene': 'LOC105378672', 'score': 11.14}, {'connected_gene': 'EXO5', 'score': 11.14}, {'connected_gene': 'ENSG00000231296', 'score': 11.12}, {'connected_gene': 'ZMPSTE24', 'score': 11.12}, {'connected_gene': 'ZFP69', 'score': 10.75}, {'connected_gene': 'RLF', 'score': 10.15}, {'connected_gene': 'HEYL', 'score': 4.33}, {'connected_gene': 'GC01P040432', 'score': 0.37}, {'connected_gene': 'GC01M040364', 'score': 0.25}]
chr1	GH01I040140	40140201	40140518	0.87	[{'connected_gene': 'RLF', 'score': 21.67}, {'connected_gene': 'ZFP69B', 'score': 11.32}, {'connected_gene': 'COL9A2', 'score': 11.22}, {'connected_gene': 'PPT1', 'score': 11.21}, {'connected_gene': 'EXO5', 'score': 11.13}, {'connected_gene': 'ZMPSTE24', 'score': 10.76}, {'connected_gene': 'ENSG00000231296', 'score': 10.76}, {'connected_gene': 'TMCO2', 'score': 10.68}, {'connected_gene': 'PPIE', 'score': 10.42}, {'connected_gene': 'PPIEL', 'score': 9.92}, {'connected_gene': 'CAP1', 'score': 9.42}, {'connected_gene': 'GC01M040138', 'score': 0.77}, {'connected_gene': 'GC01P040133', 'score': 0.44}]
chr1	GH01I040421	40421361	40423821	1.33	[{'connected_gene': 'ZFP69', 'score': 23.78}, {'connected_gene': 'EXO5', 'score': 20.43}, {'connected_gene': 'PPIE', 'score': 15.01}, {'connected_gene': 'ZFP69B', 'score': 12.9}, {'connected_gene': 'SMAP2', 'score': 11.0}, {'connected_gene': 'ENSG00000227278', 'score': 10.72}, {'connected_gene': 'ENSG00000238186', 'score': 10.72}, {'connected_gene': 'LOC105378672', 'score': 10.37}, {'connected_gene': 'GC01P040432', 'score': 0.44}, {'connected_gene': 'GC01M040364', 'score': 0.22}]
chr1	GH01I040488	40488359	40488515	0.22	[{'connected_gene': 'ZNF684', 'score': 12.59}, {'connected_gene': 'ENSG00000227278', 'score': 12.24}, {'connected_gene': 'ENSG00000238186', 'score': 12.24}, {'connected_gene': 'ZFP69B', 'score': 11.67}, {'connected_gene': 'EXO5', 'score': 1.58}, {'connected_gene': 'GC01P040495', 'score': 0.44}, {'connected_gene': 'ZFP69', 'score': 0.39}, {'connected_gene': 'LOC105378672', 'score': 0.34}]
chr1	GH01I040141	40140584	40140923	0.63	[{'connected_gene': 'GC01M040138', 'score': 550.77}, {'connected_gene': 'RLF', 'score': 21.67}, {'connected_gene': 'ZFP69B', 'score': 11.32}, {'connected_gene': 'COL9A2', 'score': 11.22}, {'connected_gene': 'PPT1', 'score': 11.21}, {'connected_gene': 'EXO5', 'score': 11.13}, {'connected_gene': 'ZMPSTE24', 'score': 10.76}, {'connected_gene': 'ENSG00000231296', 'score': 10.76}, {'connected_gene': 'TMCO2', 'score': 10.68}, {'connected_gene': 'PPIE', 'score': 10.42}, {'connected_gene': 'PPIEL', 'score': 9.92}, {'connected_gene': 'CAP1', 'score': 9.42}, {'connected_gene': 'GC01P040133', 'score': 0.44}]