PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000287766	[[11034409, 11034615], [11057357, 11057419], [11058744, 11059135], [11059528, 11059660], [11060283, 11060384], [11061898, 11062008], [11064021, 11064154], [11067134, 11067269], [11067458, 11067562], [11067920, 11068045], [11070420, 11070533], [11070906, 11071038], [11072862, 11072965], [11075324, 11075425], [11076216, 11076384], [11078547, 11080933]]	[[11058897, 11059135], [11059528, 11059660], [11060283, 11060384], [11061898, 11062008], [11064021, 11064154], [11067134, 11067269], [11067458, 11067562], [11067920, 11068045], [11070420, 11070533], [11070906, 11071038], [11072862, 11072965], [11075324, 11075425], [11076216, 11076384], [11078547, 11078652]]
ENST00000425938	[[11034413, 11034615], [11057357, 11057419], [11058805, 11059013]]	[[11058897, 11059013]]
ENST00000462473	[[11034419, 11034615], [11057357, 11057419], [11058744, 11058945], [11059528, 11059562]]	None
ENST00000460480	[[11058801, 11058945], [11060283, 11060384], [11061898, 11062008], [11064021, 11064123]]	None
ENST00000536032	[[11058801, 11058945], [11060283, 11060384], [11061898, 11062008], [11064021, 11064154], [11067134, 11067269], [11067458, 11067562], [11067920, 11068045], [11070420, 11070533], [11070906, 11071038], [11072862, 11072965], [11075324, 11075425], [11076216, 11076384], [11078547, 11078834]]	[[11061961, 11062008], [11064021, 11064154], [11067134, 11067269], [11067458, 11067562], [11067920, 11068045], [11070420, 11070533], [11070906, 11071038], [11072862, 11072965], [11075324, 11075425], [11076216, 11076384], [11078547, 11078652]]
ENST00000495636	[[11074922, 11075425], [11076216, 11076384], [11078547, 11078964]]	None
NM_003042	[[11034419, 11034615], [11057357, 11057419], [11058744, 11059135], [11059528, 11059660], [11060283, 11060384], [11061898, 11062008], [11064021, 11064154], [11067134, 11067269], [11067458, 11067562], [11067920, 11068045], [11070420, 11070533], [11070906, 11071038], [11072862, 11072965], [11075324, 11075425], [11076216, 11076384], [11078547, 11080935]]	[[11058897, 11059135], [11059528, 11059660], [11060283, 11060384], [11061898, 11062008], [11064021, 11064154], [11067134, 11067269], [11067458, 11067562], [11067920, 11068045], [11070420, 11070533], [11070906, 11071038], [11072862, 11072965], [11075324, 11075425], [11076216, 11076384], [11078547, 11078652]]

Promoter

Chrom	Start	End	Description
chr3	11034403	11034492	CAGE_peak_1_at_SLC6A1_5end
chr3	11079240	11079242	CAGE_peak_6_at_SLC6A1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I011154	11154067	11156094	2.22	[{'connected_gene': 'HRH1', 'score': 553.37}, {'connected_gene': 'LOC105376951', 'score': 550.77}, {'connected_gene': 'SLC6A1', 'score': 5.38}, {'connected_gene': 'SLC6A11', 'score': 2.07}, {'connected_gene': 'VGLL4', 'score': 1.43}, {'connected_gene': 'LOC102723663', 'score': 0.23}]
chr3	GH03I011598	11598551	11605999	2.06	[{'connected_gene': 'VGLL4', 'score': 555.01}, {'connected_gene': 'PIR31694', 'score': 550.77}, {'connected_gene': 'SLC6A1', 'score': 5.22}, {'connected_gene': 'ATP2B2', 'score': 4.57}, {'connected_gene': 'ENSG00000271716', 'score': 0.77}]
chr3	GH03I011632	11632403	11644883	2.47	[{'connected_gene': 'VGLL4', 'score': 566.66}, {'connected_gene': 'SLC6A1', 'score': 4.67}, {'connected_gene': 'ENSG00000272483', 'score': 0.31}]
chr3	GH03I010994	10994433	10994602	0.53	[{'connected_gene': 'SLC6A1', 'score': 571.75}, {'connected_gene': 'ATP2B2', 'score': 6.4}, {'connected_gene': 'SLC6A11', 'score': 3.84}, {'connected_gene': 'SLC6A1-AS1', 'score': 0.34}]
chr3	GH03I010992	10992007	10992801	1.96	[{'connected_gene': 'SLC6A1', 'score': 572.36}, {'connected_gene': 'TAMM41', 'score': 9.7}, {'connected_gene': 'LOC105376950', 'score': 0.21}]
chr3	GH03I010983	10983201	10983649	0.86	[{'connected_gene': 'SLC6A1', 'score': 14.62}, {'connected_gene': 'LOC105376950', 'score': 0.22}]
chr3	GH03I010976	10976752	10978758	0.2	[{'connected_gene': 'SLC6A1', 'score': 11.33}, {'connected_gene': 'LOC105376950', 'score': 0.25}]
chr3	GH03I010989	10989604	10990867	0.38	[{'connected_gene': 'SLC6A1', 'score': 16.02}, {'connected_gene': 'LOC105376950', 'score': 0.21}]
chr3	GH03I010955	10955136	10957679	0.63	[{'connected_gene': 'SLC6A1', 'score': 11.47}, {'connected_gene': 'SLC6A1-AS1', 'score': 11.21}, {'connected_gene': 'SLC6A11', 'score': 10.29}, {'connected_gene': 'LOC105376950', 'score': 0.31}]
chr3	GH03I010803	10803321	10805537	0.56	[{'connected_gene': 'SLC6A1', 'score': 10.11}, {'connected_gene': 'SLC6A1-AS1', 'score': 10.1}, {'connected_gene': 'SLC6A11', 'score': 0.39}, {'connected_gene': 'ENSG00000230599', 'score': 0.28}]
chr3	GH03I010968	10968116	10969300	0.46	[{'connected_gene': 'SLC6A1', 'score': 11.58}, {'connected_gene': 'SLC6A1-AS1', 'score': 11.47}, {'connected_gene': 'LOC105376950', 'score': 0.26}]
chr3	GH03I010961	10961563	10962486	0.31	[{'connected_gene': 'SLC6A1', 'score': 11.63}, {'connected_gene': 'SLC6A1-AS1', 'score': 10.88}, {'connected_gene': 'LOC105376950', 'score': 0.29}]
chr3	GH03I011033	11033222	11034792	0.2	[{'connected_gene': 'SLC6A1', 'score': 10.75}, {'connected_gene': 'SLC6A1-AS1', 'score': 0.39}, {'connected_gene': 'LOC101927467', 'score': 0.31}]
chr3	GH03I011036	11036160	11038635	0.2	[{'connected_gene': 'SLC6A1', 'score': 11.97}, {'connected_gene': 'SLC6A1-AS1', 'score': 0.37}, {'connected_gene': 'LOC101927467', 'score': 0.34}]
chr3	GH03I010407	10407849	10410110	0.2	[{'connected_gene': 'SLC6A1', 'score': 9.66}, {'connected_gene': 'SLC6A1-AS1', 'score': 9.66}, {'connected_gene': 'GHRLOS', 'score': 5.22}, {'connected_gene': 'MIR885', 'score': 0.39}, {'connected_gene': 'GC03P010586', 'score': 0.34}, {'connected_gene': 'ATP2B2', 'score': 0.06}]
chr3	GH03I011011	11011592	11011651	0.81	[{'connected_gene': 'SLC6A1', 'score': 550.37}, {'connected_gene': 'SLC6A1-AS1', 'score': 0.44}]
chr3	GH03I010995	10995434	10995569	0.2	[{'connected_gene': 'SLC6A1', 'score': 22.09}, {'connected_gene': 'SLC6A1-AS1', 'score': 12.68}]
chr3	GH03I010999	10999783	11000352	0.2	[{'connected_gene': 'SLC6A1', 'score': 0.44}, {'connected_gene': 'SLC6A1-AS1', 'score': 0.37}]
chr3	GH03I010997	10997550	10997732	0.2	[{'connected_gene': 'SLC6A1', 'score': 14.68}, {'connected_gene': 'SLC6A1-AS1', 'score': 12.68}]
chr3	GH03I011003	11003892	11008144	0.57	[{'connected_gene': 'SLC6A1', 'score': 0.39}, {'connected_gene': 'SLC6A1-AS1', 'score': 0.39}]
chr3	GH03I011004	10995991	10996302	0.2	[{'connected_gene': 'SLC6A1', 'score': 22.1}, {'connected_gene': 'SLC6A1-AS1', 'score': 12.68}]
chr3	GH03I011000	11000512	11002992	0.81	[{'connected_gene': 'SLC6A1', 'score': 0.44}, {'connected_gene': 'SLC6A1-AS1', 'score': 0.37}]
chr3	GH03I010504	10504082	10504395	0.42	[{'connected_gene': 'ATP2B2', 'score': 8.52}, {'connected_gene': 'SLC6A1', 'score': 2.22}, {'connected_gene': 'GC03M010552', 'score': 0.25}, {'connected_gene': 'GC03P010586', 'score': 0.19}]
chr3	GH03I010932	10932989	10934774	0.63	[{'connected_gene': 'LOC105376950', 'score': 0.44}, {'connected_gene': 'SLC6A1', 'score': 0.22}, {'connected_gene': 'SLC6A11', 'score': 0.13}]
chr3	GH03I010948	10948067	10951660	0.67	[{'connected_gene': 'LOC105376950', 'score': 0.34}, {'connected_gene': 'SLC6A1', 'score': 0.26}]
chr3	GH03I011548	11548436	11550001	0.89	[{'connected_gene': 'ATG7', 'score': 6.18}, {'connected_gene': 'SLC6A1', 'score': 4.81}, {'connected_gene': 'PIR57794', 'score': 0.44}, {'connected_gene': 'GC03P011536', 'score': 0.39}]
chr3	GH03I011495	11495310	11496865	1.28	[{'connected_gene': 'ATG7', 'score': 6.36}, {'connected_gene': 'SLC6A1', 'score': 4.9}, {'connected_gene': 'ENSG00000235240', 'score': 0.44}, {'connected_gene': 'ENSG00000270531', 'score': 0.29}]
chr3	GH03I011060	11060601	11061982	0.86	[{'connected_gene': 'LOC101927467', 'score': 550.77}, {'connected_gene': 'SLC6A1-AS1', 'score': 11.29}, {'connected_gene': 'SLC6A1', 'score': 11.24}]
chr3	GH03I011139	11139575	11141319	1.09	[{'connected_gene': 'SLC6A1-AS1', 'score': 10.78}, {'connected_gene': 'SLC6A1', 'score': 10.77}, {'connected_gene': 'HRH1', 'score': 0.77}, {'connected_gene': 'LOC105376951', 'score': 0.39}]
chr3	GH03I011130	11130770	11131982	0.2	[{'connected_gene': 'SLC6A1-AS1', 'score': 10.52}, {'connected_gene': 'SLC6A1', 'score': 10.5}, {'connected_gene': 'HRH1', 'score': 0.44}, {'connected_gene': 'LOC101927467', 'score': 0.2}]
chr3	GH03I011119	11119318	11121266	0.38	[{'connected_gene': 'SLC6A1-AS1', 'score': 10.58}, {'connected_gene': 'SLC6A1', 'score': 10.56}, {'connected_gene': 'HRH1', 'score': 0.37}, {'connected_gene': 'LOC101927467', 'score': 0.22}]
chr3	GH03I011128	11128505	11130070	0.2	[{'connected_gene': 'SLC6A1-AS1', 'score': 10.52}, {'connected_gene': 'SLC6A1', 'score': 10.5}, {'connected_gene': 'TAMM41', 'score': 4.11}, {'connected_gene': 'HRH1', 'score': 0.44}, {'connected_gene': 'LOC101927467', 'score': 0.2}]
chr3	GH03I011171	11171441	11173229	0.66	[{'connected_gene': 'SLC6A1-AS1', 'score': 10.38}, {'connected_gene': 'SLC6A1', 'score': 10.37}, {'connected_gene': 'LOC105376951', 'score': 0.37}, {'connected_gene': 'LOC102723663', 'score': 0.29}, {'connected_gene': 'HRH1', 'score': 0.28}]
chr3	GH03I011194	11194937	11198513	1.18	[{'connected_gene': 'SLC6A1-AS1', 'score': 10.29}, {'connected_gene': 'SLC6A1', 'score': 10.27}, {'connected_gene': 'ATG7', 'score': 4.72}, {'connected_gene': 'LOC102723663', 'score': 0.39}, {'connected_gene': 'LOC105376951', 'score': 0.26}, {'connected_gene': 'HRH1', 'score': 0.22}]
chr3	GH03I011182	11182312	11187555	1.3	[{'connected_gene': 'SLC6A1-AS1', 'score': 10.41}, {'connected_gene': 'SLC6A1', 'score': 10.39}, {'connected_gene': 'LOC102723663', 'score': 0.34}, {'connected_gene': 'LOC105376951', 'score': 0.29}, {'connected_gene': 'HRH1', 'score': 0.25}]
chr3	GH03I011072	11072600	11073072	0.2	[{'connected_gene': 'SLC6A1-AS1', 'score': 10.76}, {'connected_gene': 'SLC6A1', 'score': 10.71}, {'connected_gene': 'LOC101927467', 'score': 0.39}, {'connected_gene': 'HRH1', 'score': 0.21}]
chr3	GH03I011016	11016687	11024355	0.64	[{'connected_gene': 'SLC6A1-AS1', 'score': 550.77}, {'connected_gene': 'SLC6A1', 'score': 0.31}, {'connected_gene': 'LOC101927467', 'score': 0.26}]
chr3	GH03I011002	10995706	10995930	0.2	[{'connected_gene': 'SLC6A1-AS1', 'score': 12.68}, {'connected_gene': 'SLC6A1', 'score': 12.49}]
chr3	GH03I010996	10996545	10996700	0.46	[{'connected_gene': 'SLC6A1-AS1', 'score': 12.68}, {'connected_gene': 'SLC6A1', 'score': 0.77}]
chr3	GH03I011001	10997885	10999181	0.67	[{'connected_gene': 'SLC6A1-AS1', 'score': 12.68}, {'connected_gene': 'SLC6A1', 'score': 0.44}]
chr3	GH03I010998	10997119	10997362	0.2	[{'connected_gene': 'SLC6A1-AS1', 'score': 12.68}, {'connected_gene': 'SLC6A1', 'score': 5.28}]
chr3	GH03I011009	11009243	11010990	0.43	[{'connected_gene': 'SLC6A1-AS1', 'score': 0.44}, {'connected_gene': 'SLC6A1', 'score': 0.37}]
chr3	GH03I011005	10994995	10995319	0.31	[{'connected_gene': 'SLC6A1-AS1', 'score': 12.68}, {'connected_gene': 'SLC6A1', 'score': 10.61}]
chr3	GH03I010473	10473464	10475444	0.6	[{'connected_gene': 'MIR885', 'score': 10.15}, {'connected_gene': 'SLC6A1', 'score': 9.48}, {'connected_gene': 'SLC6A1-AS1', 'score': 9.48}, {'connected_gene': 'GC03P010586', 'score': 0.26}, {'connected_gene': 'GC03M010552', 'score': 0.18}, {'connected_gene': 'ATP2B2', 'score': 0.07}]
chr3	GH03I011533	11533815	11535701	0.38	[{'connected_gene': 'GC03P011536', 'score': 550.77}, {'connected_gene': 'SLC6A1', 'score': 5.63}, {'connected_gene': 'ATG7', 'score': 4.73}, {'connected_gene': 'ENSG00000270531', 'score': 0.44}]
chr3	GH03I011198	11198961	11202986	1.17	[{'connected_gene': 'ENSG00000271716', 'score': 13.33}, {'connected_gene': 'TAMM41', 'score': 12.83}, {'connected_gene': 'SEC13', 'score': 11.07}, {'connected_gene': 'SLC6A1-AS1', 'score': 10.28}, {'connected_gene': 'SLC6A1', 'score': 10.27}, {'connected_gene': 'GHRLOS', 'score': 9.76}, {'connected_gene': 'ATG7', 'score': 9.63}, {'connected_gene': 'LOC102723663', 'score': 0.44}, {'connected_gene': 'LOC105376951', 'score': 0.25}, {'connected_gene': 'HRH1', 'score': 0.21}]