PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000254488	[[10857884, 10858206], [10861149, 10861284], [10861396, 10861537], [10864986, 10865077], [10885898, 10886031], [10916645, 10916780], [10953774, 10953878], [10960013, 10960138], [10967689, 10967802], [10970887, 10971025], [10974836, 10974939], [10975751, 10975852], [10976714, 10976885], [10979935, 10982419]]	[[10857950, 10858206], [10861149, 10861284], [10861396, 10861537], [10864986, 10865077], [10885898, 10886031], [10916645, 10916780], [10953774, 10953878], [10960013, 10960138], [10967689, 10967802], [10970887, 10971025], [10974836, 10974939], [10975751, 10975852], [10976714, 10976885], [10979935, 10980088]]
ENST00000454147	[[10857885, 10858206], [10861149, 10861284], [10861396, 10861537], [10864986, 10867183]]	[[10857950, 10858206], [10861149, 10861284], [10861396, 10861537], [10864986, 10865081]]
ENST00000464828	[[10975651, 10975852], [10976714, 10977083]]	None
NM_014229	[[10857884, 10858206], [10861149, 10861284], [10861396, 10861537], [10864986, 10865077], [10885898, 10886031], [10916645, 10916780], [10953774, 10953878], [10960013, 10960138], [10967689, 10967802], [10970887, 10971025], [10974836, 10974939], [10975751, 10975852], [10976714, 10976885], [10979935, 10982419]]	[[10857950, 10858206], [10861149, 10861284], [10861396, 10861537], [10864986, 10865077], [10885898, 10886031], [10916645, 10916780], [10953774, 10953878], [10960013, 10960138], [10967689, 10967802], [10970887, 10971025], [10974836, 10974939], [10975751, 10975852], [10976714, 10976885], [10979935, 10980088]]
NM_001317406	[[10857884, 10858206], [10861149, 10861284], [10861396, 10861537], [10864986, 10875477]]	[[10857950, 10858206], [10861149, 10861284], [10861396, 10861537], [10864986, 10865081]]

Promoter

Chrom	Start	End	Description
chr3	10857905	10857920	CAGE_peak_1_at_SLC6A11_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I011154	11154067	11156094	2.22	[{'connected_gene': 'HRH1', 'score': 553.37}, {'connected_gene': 'LOC105376951', 'score': 550.77}, {'connected_gene': 'SLC6A1', 'score': 5.38}, {'connected_gene': 'SLC6A11', 'score': 2.07}, {'connected_gene': 'VGLL4', 'score': 1.43}, {'connected_gene': 'LOC102723663', 'score': 0.23}]
chr3	GH03I010815	10815801	10816924	1.1	[{'connected_gene': 'SLC6A11', 'score': 550.77}, {'connected_gene': 'LOC105376950', 'score': 0.14}]
chr3	GH03I010994	10994433	10994602	0.53	[{'connected_gene': 'SLC6A1', 'score': 571.75}, {'connected_gene': 'ATP2B2', 'score': 6.4}, {'connected_gene': 'SLC6A11', 'score': 3.84}, {'connected_gene': 'SLC6A1-AS1', 'score': 0.34}]
chr3	GH03I010955	10955136	10957679	0.63	[{'connected_gene': 'SLC6A1', 'score': 11.47}, {'connected_gene': 'SLC6A1-AS1', 'score': 11.21}, {'connected_gene': 'SLC6A11', 'score': 10.29}, {'connected_gene': 'LOC105376950', 'score': 0.31}]
chr3	GH03I010803	10803321	10805537	0.56	[{'connected_gene': 'SLC6A1', 'score': 10.11}, {'connected_gene': 'SLC6A1-AS1', 'score': 10.1}, {'connected_gene': 'SLC6A11', 'score': 0.39}, {'connected_gene': 'ENSG00000230599', 'score': 0.28}]
chr3	GH03I010925	10925202	10929199	0.38	[{'connected_gene': 'LOC105376950', 'score': 550.77}, {'connected_gene': 'SLC6A11', 'score': 5.71}]
chr3	GH03I010932	10932989	10934774	0.63	[{'connected_gene': 'LOC105376950', 'score': 0.44}, {'connected_gene': 'SLC6A1', 'score': 0.22}, {'connected_gene': 'SLC6A11', 'score': 0.13}]
chr3	GH03I010770	10770879	10772799	0.65	[{'connected_gene': 'ENSG00000230599', 'score': 0.77}, {'connected_gene': 'SLC6A11', 'score': 0.26}]
chr3	GH03I010780	10780316	10780485	0.49	[{'connected_gene': 'ENSG00000230599', 'score': 0.39}, {'connected_gene': 'SLC6A11', 'score': 0.28}]