PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000310926	[[133651539, 133653674], [133654617, 133654741], [133657272, 133657337], [133661448, 133661612], [133663938, 133664104], [133666099, 133666289], [133667379, 133667544], [133667736, 133667815], [133670051, 133670188], [133672506, 133672605], [133673809, 133674037], [133692506, 133692669], [133698324, 133698462], [133748550, 133748920]]	[[133653556, 133653674], [133654617, 133654741], [133657272, 133657337], [133661448, 133661612], [133663938, 133664104], [133666099, 133666289], [133667379, 133667544], [133667736, 133667815], [133670051, 133670188], [133672506, 133672605], [133673809, 133674037], [133692506, 133692669], [133698324, 133698462], [133748550, 133748646]]
ENST00000493729	[[133653454, 133653674], [133654617, 133654741], [133657272, 133657337], [133661448, 133661612], [133663938, 133664104], [133666099, 133666289], [133667379, 133667544], [133667736, 133667815], [133670051, 133670188], [133672506, 133672605], [133692506, 133692669], [133698324, 133698462], [133748550, 133748758]]	[[133653556, 133653674], [133654617, 133654741], [133657272, 133657337], [133661448, 133661612], [133663938, 133664104], [133666099, 133666289], [133667379, 133667544], [133667736, 133667815], [133670051, 133670188], [133672506, 133672605], [133692506, 133692669], [133698324, 133698462], [133748550, 133748646]]
ENST00000481359	[[133653482, 133653674], [133654617, 133654741], [133657272, 133657337], [133661448, 133661612], [133663938, 133664104], [133667379, 133667544], [133667736, 133667815], [133670051, 133670188], [133672506, 133672605], [133673809, 133674037], [133692506, 133692669], [133698324, 133698462], [133748550, 133748767]]	[[133663961, 133664104], [133667379, 133667544], [133667736, 133667815], [133670051, 133670188], [133672506, 133672605], [133673809, 133674037], [133692506, 133692669], [133698324, 133698462], [133748550, 133748646]]
ENST00000462770	[[133661155, 133661612], [133663938, 133664104], [133666099, 133666289], [133667379, 133667544], [133692506, 133692669], [133698324, 133698462], [133748550, 133748769]]	None
ENST00000464676	[[133669795, 133670188], [133672506, 133672605], [133673809, 133674037], [133692506, 133692669], [133698324, 133698462], [133717491, 133717630], [133748550, 133748769]]	None
ENST00000478651	[[133674186, 133674219], [133692506, 133692669], [133698324, 133698462], [133748550, 133748769]]	None
ENST00000477061	[[133667497, 133667544], [133667736, 133668060]]	None
ENST00000478662	[[133698390, 133698462], [133770934, 133771028]]	None
NM_005630	[[133651539, 133653674], [133654617, 133654741], [133657272, 133657337], [133661448, 133661612], [133663938, 133664104], [133666099, 133666289], [133667379, 133667544], [133667736, 133667815], [133670051, 133670188], [133672506, 133672605], [133673809, 133674037], [133692506, 133692669], [133698324, 133698462], [133748550, 133748920]]	[[133653556, 133653674], [133654617, 133654741], [133657272, 133657337], [133661448, 133661612], [133663938, 133664104], [133666099, 133666289], [133667379, 133667544], [133667736, 133667815], [133670051, 133670188], [133672506, 133672605], [133673809, 133674037], [133692506, 133692669], [133698324, 133698462], [133748550, 133748646]]

Promoter

Chrom	Start	End	Description
chr3	133667806	133667817	CAGE_peak_5_at_SLCO2A1_5end
chr3	133748762	133748778	CAGE_peak_1_at_SLCO2A1_5end
chr3	133748913	133748927	CAGE_peak_2_at_SLCO2A1_5end
chr3	133748943	133748955	CAGE_peak_3_at_SLCO2A1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I133967	133967809	133968154	0.39	[{'connected_gene': 'C3orf36', 'score': 27.1}, {'connected_gene': 'SLCO2A1', 'score': 4.55}, {'connected_gene': 'GC03M133943', 'score': 0.37}]
chr3	GH03I133979	133979348	133980454	0.38	[{'connected_gene': 'C3orf36', 'score': 10.66}, {'connected_gene': 'GC03M133943', 'score': 0.44}, {'connected_gene': 'SLCO2A1', 'score': 0.19}]
chr3	GH03I133962	133962517	133963441	0.46	[{'connected_gene': 'C3orf36', 'score': 11.01}, {'connected_gene': 'SLCO2A1', 'score': 10.49}, {'connected_gene': 'GC03M133943', 'score': 0.34}]
chr3	GH03I134030	134029035	134029156	0.39	[{'connected_gene': 'C3orf36', 'score': 31.12}, {'connected_gene': 'SLCO2A1', 'score': 23.85}, {'connected_gene': 'GC03M133943', 'score': 0.26}]
chr3	GH03I134083	134083683	134085842	0.2	[{'connected_gene': 'SLCO2A1', 'score': 11.83}, {'connected_gene': 'C3orf36', 'score': 9.78}, {'connected_gene': 'RYK', 'score': 4.45}, {'connected_gene': 'LOC105374117', 'score': 0.37}, {'connected_gene': 'GC03M134152', 'score': 0.2}]
chr3	GH03I134077	134077901	134079566	0.57	[{'connected_gene': 'SLCO2A1', 'score': 12.27}, {'connected_gene': 'C3orf36', 'score': 9.92}, {'connected_gene': 'LOC105374117', 'score': 0.44}, {'connected_gene': 'GC03M134152', 'score': 0.18}, {'connected_gene': 'RYK', 'score': 0.09}]
chr3	GH03I134161	134161917	134162046	0.49	[{'connected_gene': 'SLCO2A1', 'score': 10.87}, {'connected_gene': 'C3orf36', 'score': 10.22}, {'connected_gene': 'GC03M134152', 'score': 0.44}, {'connected_gene': 'HMGB3P14', 'score': 0.44}, {'connected_gene': 'RYK', 'score': 0.17}]
chr3	GH03I133942	133942416	133946705	1.06	[{'connected_gene': 'SLCO2A1', 'score': 10.36}, {'connected_gene': 'C3orf36', 'score': 0.39}, {'connected_gene': 'GC03M133943', 'score': 0.26}]
chr3	GH03I134003	134003137	134003286	0.49	[{'connected_gene': 'SLCO2A1', 'score': 11.78}, {'connected_gene': 'C3orf36', 'score': 10.15}, {'connected_gene': 'GC03M133943', 'score': 0.37}]
chr3	GH03I133991	133991317	133992182	0.58	[{'connected_gene': 'SLCO2A1', 'score': 10.94}, {'connected_gene': 'C3orf36', 'score': 10.8}, {'connected_gene': 'GC03M133943', 'score': 0.77}]
chr3	GH03I133992	133992517	133992666	0.31	[{'connected_gene': 'SLCO2A1', 'score': 10.64}, {'connected_gene': 'C3orf36', 'score': 10.03}, {'connected_gene': 'GC03M133943', 'score': 0.44}]
chr3	GH03I134008	134008013	134010154	0.84	[{'connected_gene': 'SLCO2A1', 'score': 11.45}, {'connected_gene': 'C3orf36', 'score': 10.05}, {'connected_gene': 'GC03M133943', 'score': 0.34}]
chr3	GH03I134091	134091682	134095430	1	[{'connected_gene': 'SLCO2A1', 'score': 13.0}, {'connected_gene': 'RYK', 'score': 6.72}, {'connected_gene': 'LOC105374117', 'score': 0.34}, {'connected_gene': 'GC03M134152', 'score': 0.21}]
chr3	GH03I134090	134090183	134090306	0.2	[{'connected_gene': 'SLCO2A1', 'score': 11.64}, {'connected_gene': 'LOC105374117', 'score': 0.34}, {'connected_gene': 'GC03M134152', 'score': 0.21}, {'connected_gene': 'RYK', 'score': 0.1}]
chr3	GH03I134037	134037172	134040519	0.69	[{'connected_gene': 'SLCO2A1', 'score': 5.22}, {'connected_gene': 'GC03M133943', 'score': 0.23}]
chr3	GH03I134029	134029445	134030201	1.8	[{'connected_gene': 'SLCO2A1', 'score': 562.62}, {'connected_gene': 'GC03M133943', 'score': 0.26}]
chr3	GH03I134496	134496167	134496990	1.13	[{'connected_gene': 'ANAPC13', 'score': 65.12}, {'connected_gene': 'RYK', 'score': 13.02}, {'connected_gene': 'SLCO2A1', 'score': 4.76}, {'connected_gene': 'LOC100421154', 'score': 0.39}, {'connected_gene': 'CEP63', 'score': 0.39}]
chr3	GH03I134056	134056583	134058679	0.75	[{'connected_gene': 'LINC02000', 'score': 550.77}, {'connected_gene': 'RYK', 'score': 12.28}, {'connected_gene': 'TFP1', 'score': 10.27}, {'connected_gene': 'TOPBP1', 'score': 10.24}, {'connected_gene': 'SLCO2A1', 'score': 0.44}]
chr3	GH03I133986	133986356	133990873	0.65	[{'connected_gene': 'GC03M133943', 'score': 550.77}, {'connected_gene': 'SLCO2A1', 'score': 10.94}, {'connected_gene': 'C3orf36', 'score': 10.81}]