PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000221086	[[11141924, 11142579], [11152702, 11152811], [11157531, 11157657], [11162349, 11162523], [11163698, 11163916], [11167035, 11167197], [11172431, 11172573], [11174181, 11174402], [11177195, 11177347], [11180133, 11185646]]	[[11142397, 11142579], [11152702, 11152811], [11157531, 11157657], [11162349, 11162523], [11163698, 11163916], [11167035, 11167197], [11172431, 11172573], [11174181, 11174402], [11177195, 11177347], [11180133, 11180297]]
ENST00000530200	[[11142335, 11142579], [11152702, 11152811], [11155408, 11155460], [11157531, 11157657], [11162349, 11162523], [11163698, 11163916], [11167035, 11167197], [11172431, 11172573], [11174181, 11174402], [11177195, 11177347], [11180133, 11182036]]	[[11142397, 11142579], [11152702, 11152811], [11155408, 11155423]]
ENST00000526292	[[11142602, 11142825], [11152702, 11152811], [11157531, 11157657], [11162349, 11162523], [11163698, 11163916], [11167035, 11167197], [11172431, 11172573], [11174181, 11174402], [11177195, 11177347], [11180133, 11180566]]	[[11152775, 11152811], [11157531, 11157657], [11162349, 11162523], [11163698, 11163916], [11167035, 11167197], [11172431, 11172573], [11174181, 11174402], [11177195, 11177347], [11180133, 11180297]]
ENST00000528389	[[11152283, 11152811], [11157531, 11158286]]	None
NM_015458	[[11141999, 11142579], [11152702, 11152811], [11157531, 11157657], [11162349, 11162523], [11163698, 11163916], [11167035, 11167197], [11172431, 11172573], [11174181, 11174402], [11177195, 11177347], [11180133, 11185655]]	[[11142397, 11142579], [11152702, 11152811], [11157531, 11157657], [11162349, 11162523], [11163698, 11163916], [11167035, 11167197], [11172431, 11172573], [11174181, 11174402], [11177195, 11177347], [11180133, 11180297]]

Promoter

Chrom	Start	End	Description
chr8	11141926	11141937	CAGE_peak_5_at_MTMR9_5end
chr8	11141944	11141969	CAGE_peak_3_at_MTMR9_5end
chr8	11141984	11142047	CAGE_peak_2_at_MTMR9_5end
chr8	11142299	11142375	CAGE_peak_1_at_MTMR9_5end
chr8	11183173	11183183	CAGE_peak_4_at_MTMR9_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I011294	11294332	11294481	0.52	[{'connected_gene': 'SLC35G5', 'score': 10.92}, {'connected_gene': 'LINC00529', 'score': 10.06}, {'connected_gene': 'MTMR9', 'score': 0.44}, {'connected_gene': 'ENSG00000280273', 'score': 0.44}, {'connected_gene': 'PIR36234', 'score': 0.29}]
chr8	GH08I011297	11297552	11297741	0.72	[{'connected_gene': 'SLC35G5', 'score': 10.94}, {'connected_gene': 'LINC00529', 'score': 10.06}, {'connected_gene': 'MTMR9', 'score': 0.39}, {'connected_gene': 'ENSG00000280273', 'score': 0.39}, {'connected_gene': 'PIR36234', 'score': 0.31}]
chr8	GH08I011304	11304472	11304641	0.63	[{'connected_gene': 'SLC35G5', 'score': 10.75}, {'connected_gene': 'ENSG00000280273', 'score': 0.37}, {'connected_gene': 'MTMR9', 'score': 0.34}, {'connected_gene': 'PIR36234', 'score': 0.34}]
chr8	GH08I011482	11482572	11484539	1.01	[{'connected_gene': 'FAM167A', 'score': 24.74}, {'connected_gene': 'FAM90A2P', 'score': 14.63}, {'connected_gene': 'LOC105379241', 'score': 14.21}, {'connected_gene': 'PINX1', 'score': 13.36}, {'connected_gene': 'LOC101929290', 'score': 13.07}, {'connected_gene': 'FAM86B1', 'score': 11.89}, {'connected_gene': 'FAM66A', 'score': 11.41}, {'connected_gene': 'MTMR9', 'score': 11.17}, {'connected_gene': 'FAM66D', 'score': 11.16}, {'connected_gene': 'ENPP7P12', 'score': 9.83}, {'connected_gene': 'FAM86B2', 'score': 9.69}, {'connected_gene': 'ENSG00000269918', 'score': 4.83}, {'connected_gene': 'BLK', 'score': 0.39}]
chr8	GH08I011455	11455889	11458985	2.16	[{'connected_gene': 'FAM167A', 'score': 574.87}, {'connected_gene': 'BLK', 'score': 11.27}, {'connected_gene': 'LOC105379241', 'score': 11.15}, {'connected_gene': 'ENSG00000255518', 'score': 11.14}, {'connected_gene': 'ENSG00000255354', 'score': 11.14}, {'connected_gene': 'ENSG00000255310', 'score': 7.73}, {'connected_gene': 'XKR6', 'score': 3.25}, {'connected_gene': 'MTMR9', 'score': 2.21}, {'connected_gene': 'PIR35143', 'score': 0.29}]
chr8	GH08I011464	11464353	11468260	2.46	[{'connected_gene': 'FAM167A', 'score': 567.44}, {'connected_gene': 'PINX1', 'score': 13.36}, {'connected_gene': 'LOC101929290', 'score': 13.08}, {'connected_gene': 'LOC105379241', 'score': 12.35}, {'connected_gene': 'ENSG00000255310', 'score': 8.15}, {'connected_gene': 'MTMR9', 'score': 1.91}, {'connected_gene': 'NEIL2', 'score': 1.19}, {'connected_gene': 'XKR6', 'score': 1.18}, {'connected_gene': 'PIR35143', 'score': 0.26}]
chr8	GH08I011472	11472877	11477987	1.28	[{'connected_gene': 'FAM167A', 'score': 570.09}, {'connected_gene': 'FAM66A', 'score': 22.73}, {'connected_gene': 'FAM66D', 'score': 21.4}, {'connected_gene': 'LOC105379241', 'score': 15.4}, {'connected_gene': 'LOC101929290', 'score': 14.52}, {'connected_gene': 'FAM90A2P', 'score': 13.94}, {'connected_gene': 'FAM86B1', 'score': 13.88}, {'connected_gene': 'PINX1', 'score': 12.2}, {'connected_gene': 'ALG1L11P', 'score': 11.35}, {'connected_gene': 'MTMR9', 'score': 10.54}, {'connected_gene': 'LOC102723313', 'score': 10.11}, {'connected_gene': 'ENSG00000255310', 'score': 9.6}, {'connected_gene': 'LOC100129129', 'score': 5.1}, {'connected_gene': 'PIR35143', 'score': 0.23}]
chr8	GH08I011573	11573652	11573873	0.8	[{'connected_gene': 'FAM90A2P', 'score': 12.43}, {'connected_gene': 'MTMR9', 'score': 10.65}, {'connected_gene': 'FAM66A', 'score': 10.42}, {'connected_gene': 'FAM66D', 'score': 5.48}, {'connected_gene': 'LINC00208', 'score': 0.77}, {'connected_gene': 'ENSG00000255354', 'score': 0.39}]
chr8	GH08I011283	11283695	11286001	2.09	[{'connected_gene': 'MTMR9', 'score': 559.97}, {'connected_gene': 'ENSG00000280273', 'score': 550.77}, {'connected_gene': 'PINX1', 'score': 26.51}, {'connected_gene': 'LOC101929290', 'score': 23.41}, {'connected_gene': 'FAM90A2P', 'score': 23.06}, {'connected_gene': 'LOC100129129', 'score': 11.36}, {'connected_gene': 'FAM86B1', 'score': 10.29}, {'connected_gene': 'ENSG00000272505', 'score': 4.36}]
chr8	GH08I011013	11013982	11017154	1.49	[{'connected_gene': 'MTMR9', 'score': 10.69}, {'connected_gene': 'ENSG00000269918', 'score': 9.04}, {'connected_gene': 'ENSG00000255310', 'score': 8.7}, {'connected_gene': 'XKR6', 'score': 1.27}, {'connected_gene': 'MIR598', 'score': 0.37}, {'connected_gene': 'GC08P010967', 'score': 0.25}, {'connected_gene': 'PIR55470', 'score': 0.25}]
chrX	GH0XI064850	64850644	64851059	0.28	[{'connected_gene': 'MTMR8', 'score': 4.25}, {'connected_gene': 'LOC105373239', 'score': 0.44}, {'connected_gene': 'GC0XM064895', 'score': 0.26}]
chrX	GH0XI064351	64351672	64352675	0.31	[{'connected_gene': 'MTMR8', 'score': 12.71}, {'connected_gene': 'GC0XM064277', 'score': 0.29}, {'connected_gene': 'GC0XM064275', 'score': 0.29}, {'connected_gene': 'GC0XM064276', 'score': 0.29}, {'connected_gene': 'LOC100421109', 'score': 0.25}]
chr8	GH08I011292	11292290	11292909	0.54	[{'connected_gene': 'MTMR9', 'score': 8.8}, {'connected_gene': 'ENSG00000280273', 'score': 0.44}, {'connected_gene': 'PIR36234', 'score': 0.29}]
chrX	GH0XI064394	64394401	64396070	1.81	[{'connected_gene': 'MTMR8', 'score': 550.77}, {'connected_gene': 'GC0XM064277', 'score': 0.39}]
chr8	GH08I011506	11506133	11518124	1.63	[{'connected_gene': 'PINX1', 'score': 81.84}, {'connected_gene': 'LOC101929290', 'score': 79.19}, {'connected_gene': 'FAM90A2P', 'score': 34.12}, {'connected_gene': 'MTMR9', 'score': 30.38}, {'connected_gene': 'FAM66A', 'score': 30.21}, {'connected_gene': 'FAM167A', 'score': 24.61}, {'connected_gene': 'LOC105379241', 'score': 22.07}, {'connected_gene': 'FAM66D', 'score': 19.37}, {'connected_gene': 'FAM86B1', 'score': 11.89}, {'connected_gene': 'ENSG00000255518', 'score': 11.09}, {'connected_gene': 'ENSG00000255354', 'score': 11.09}, {'connected_gene': 'ENPP7P6', 'score': 10.34}, {'connected_gene': 'ENPP7P12', 'score': 9.83}, {'connected_gene': 'FAM86B2', 'score': 9.69}, {'connected_gene': 'LOC100129129', 'score': 6.2}, {'connected_gene': 'ENSG00000269954', 'score': 6.05}, {'connected_gene': 'ENSG00000255310', 'score': 5.95}, {'connected_gene': 'ENSG00000269918', 'score': 5.76}, {'connected_gene': 'ENSG00000270154', 'score': 5.14}, {'connected_gene': 'BLK', 'score': 4.13}]
chr8	GH08I011178	11178857	11179041	0.33	[{'connected_gene': 'XKR6', 'score': 14.26}, {'connected_gene': 'ENSG00000254936', 'score': 11.31}, {'connected_gene': 'MTMR9', 'score': 1.82}, {'connected_gene': 'RPL17P29', 'score': 0.77}, {'connected_gene': 'GC08M011176', 'score': 0.44}]
chrX	GH0XI064334	64334428	64334591	0.24	[{'connected_gene': 'AMER1', 'score': 3.6}, {'connected_gene': 'MTMR8', 'score': 2.68}, {'connected_gene': 'LOC100421109', 'score': 0.31}, {'connected_gene': 'GC0XM064277', 'score': 0.25}, {'connected_gene': 'GC0XM064275', 'score': 0.25}, {'connected_gene': 'GC0XM064276', 'score': 0.25}]
chr8	GH08I010850	10850290	10851200	0.87	[{'connected_gene': 'LOC101929248', 'score': 550.77}, {'connected_gene': 'MTMR9', 'score': 10.64}, {'connected_gene': 'RP1L1', 'score': 9.42}, {'connected_gene': 'ENSG00000269918', 'score': 6.41}, {'connected_gene': 'ENSG00000280294', 'score': 0.44}]
chrX	GH0XI063433	63433159	63435430	0.85	[{'connected_gene': 'LOC100421109', 'score': 12.88}, {'connected_gene': 'SPIN4-AS1', 'score': 11.51}, {'connected_gene': 'MTMR8', 'score': 10.03}, {'connected_gene': 'PIR59801', 'score': 0.21}, {'connected_gene': 'LINC01278', 'score': 0.13}]