PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000331860	[[152974222, 152974269], [152975078, 152975162], [152975477, 152976331]]	[[152975496, 152976006]]
ENST00000495845	[[152974224, 152974269], [152974421, 152974876]]	None
ENST00000443178	[[152974226, 152974269], [152975078, 152975162], [152975477, 152975972]]	[[152975496, 152975972]]
ENST00000295367	[[152974246, 152974269], [152975477, 152976332]]	[[152975496, 152976006]]
ENST00000542696	[[152975496, 152975772], [152975796, 152976006]]	[[152975496, 152975772], [152975796, 152976006]]
NM_001097589	[[152974222, 152974269], [152975477, 152976332]]	[[152975496, 152976006]]
NM_005416	[[152974222, 152974269], [152975078, 152975162], [152975477, 152976332]]	[[152975496, 152976006]]

Promoter

Chrom	Start	End	Description
chr1	152974218	152974231	CAGE_peak_1_at_SPRR3_5end
chr1	152975124	152975130	CAGE_peak_3_at_SPRR3_5end
chr1	152975474	152975485	CAGE_peak_2_at_SPRR3_5end
chr1	152975488	152975498	CAGE_peak_4_at_SPRR3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I152967	152967265	152967414	0.52	[{'connected_gene': 'SPRR3', 'score': 9.86}, {'connected_gene': 'SPRR4', 'score': 0.77}, {'connected_gene': 'LINC01527', 'score': 0.37}]
chr1	GH01I153001	153001700	153001759	0.73	[{'connected_gene': 'SPRR3', 'score': 550.77}, {'connected_gene': 'GC01P152985', 'score': 0.37}]
chr1	GH01I153032	153031269	153033848	0.67	[{'connected_gene': 'SPRR1B', 'score': 572.09}, {'connected_gene': 'LOC105371446', 'score': 18.46}, {'connected_gene': 'SPRR3', 'score': 10.26}, {'connected_gene': 'SPRR2D', 'score': 0.44}]
chr1	GH01I152953	152953281	152955242	0.62	[{'connected_gene': 'LOC105371446', 'score': 12.17}, {'connected_gene': 'SPRR1A', 'score': 10.88}, {'connected_gene': 'SPRR3', 'score': 10.03}, {'connected_gene': 'S100A16', 'score': 4.04}, {'connected_gene': 'LINC01527', 'score': 0.44}, {'connected_gene': 'SPRR4', 'score': 0.37}]
chr1	GH01I153586	153586565	153587949	0.49	[{'connected_gene': 'PIR44602', 'score': 550.77}, {'connected_gene': 'CRTC2', 'score': 19.33}, {'connected_gene': 'SLC27A3', 'score': 14.99}, {'connected_gene': 'UBAP2L', 'score': 14.86}, {'connected_gene': 'CHTOP', 'score': 14.76}, {'connected_gene': 'CREB3L4', 'score': 13.38}, {'connected_gene': 'INTS3', 'score': 12.05}, {'connected_gene': 'ENSG00000238279', 'score': 10.86}, {'connected_gene': 'S100A13', 'score': 10.83}, {'connected_gene': 'ILF2', 'score': 10.45}, {'connected_gene': 'SPRR3', 'score': 4.59}, {'connected_gene': 'HAX1', 'score': 4.11}, {'connected_gene': 'GC01P153610', 'score': 0.37}]