PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000555997	[[69254376, 69257209], [69257699, 69257960]]	[[69257204, 69257209], [69257699, 69257904]]
ENST00000439696	[[69254378, 69257209], [69259598, 69259957]]	[[69256249, 69257209], [69259598, 69259655]]
ENST00000336440	[[69255321, 69255526], [69256243, 69257209], [69259598, 69261453]]	[[69256249, 69257209], [69259598, 69259655]]
ENST00000557086	[[69256661, 69257209], [69262791, 69262970]]	[[69256661, 69257209], [69262791, 69262866]]
ENST00000557022	[[69256671, 69257209], [69262759, 69262798]]	[[69256671, 69257200]]
ENST00000553375	[[69256905, 69257209], [69259598, 69259787], [69262791, 69262931]]	[[69256905, 69257209], [69259598, 69259787], [69262791, 69262866]]
ENST00000408913	[[69261463, 69263190]]	[[69262510, 69263011]]
NM_004926	[[69254371, 69257209], [69259598, 69260631]]	[[69256249, 69257209], [69259598, 69259655]]
NM_001244698	[[69254371, 69255526], [69256243, 69257209], [69259598, 69260631]]	[[69256249, 69257209], [69259598, 69259655]]
NM_001244701	[[69254371, 69257209], [69259598, 69259787], [69262791, 69262960]]	[[69256249, 69257209], [69259598, 69259787], [69262791, 69262866]]

Promoter

Chrom	Start	End	Description
chr14	69259772	69259790	CAGE_peak_1_at_ZFP36L1_5end
chr14	69260117	69260141	CAGE_peak_4_at_ZFP36L1_5end
chr14	69260437	69260442	CAGE_peak_10_at_ZFP36L1_5end
chr14	69261085	69261095	CAGE_peak_15_at_ZFP36L1_5end
chr14	69261310	69261326	CAGE_peak_5_at_ZFP36L1_5end
chr14	69262789	69262822	CAGE_peak_2_at_ZFP36L1_5end
chr14	69262827	69262841	CAGE_peak_7_at_ZFP36L1_5end
chr14	69262916	69262929	CAGE_peak_11_at_ZFP36L1_5end
chr14	69262947	69262986	CAGE_peak_3_at_ZFP36L1_5end
chr14	69263043	69263069	CAGE_peak_8_at_ZFP36L1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I068752	68752246	68753248	0.31	[{'connected_gene': 'SUSD6', 'score': 4.96}, {'connected_gene': 'RNU6-921P', 'score': 0.37}, {'connected_gene': 'GC14M068736', 'score': 0.37}, {'connected_gene': 'ZFP36L1', 'score': 0.26}, {'connected_gene': 'GC14M068442', 'score': 0.1}]
chr14	GH14I068747	68747162	68750192	0.79	[{'connected_gene': 'SUSD6', 'score': 6.68}, {'connected_gene': 'RNU6-921P', 'score': 0.39}, {'connected_gene': 'GC14M068736', 'score': 0.39}, {'connected_gene': 'ZFP36L1', 'score': 0.25}, {'connected_gene': 'GC14M068442', 'score': 0.09}]
chr14	GH14I068753	68753745	68753893	0.2	[{'connected_gene': 'SUSD6', 'score': 5.61}, {'connected_gene': 'RNU6-921P', 'score': 0.37}, {'connected_gene': 'GC14M068736', 'score': 0.37}, {'connected_gene': 'ZFP36L1', 'score': 0.26}, {'connected_gene': 'GC14M068442', 'score': 0.1}]
chr14	GH14I068931	68931002	68953799	1.75	[{'connected_gene': 'ACTN1', 'score': 19.67}, {'connected_gene': 'ZFP36L1', 'score': 8.04}, {'connected_gene': 'DCAF5', 'score': 3.39}, {'connected_gene': 'GALNT16', 'score': 1.27}, {'connected_gene': 'BANF1P1', 'score': 0.44}, {'connected_gene': 'GC14P068937', 'score': 0.44}]
chr14	GH14I068927	68927249	68930799	1.3	[{'connected_gene': 'ACTN1', 'score': 7.02}, {'connected_gene': 'ZFP36L1', 'score': 6.98}, {'connected_gene': 'DCAF5', 'score': 4.09}, {'connected_gene': 'GC14M068442', 'score': 0.44}, {'connected_gene': 'BANF1P1', 'score': 0.44}]
chr14	GH14I069054	69054465	69058297	1.34	[{'connected_gene': 'ACTN1', 'score': 11.07}, {'connected_gene': 'EXD2', 'score': 10.05}, {'connected_gene': 'DCAF5', 'score': 1.92}, {'connected_gene': 'ZFP36L1', 'score': 1.78}, {'connected_gene': 'DDX18P1', 'score': 0.31}, {'connected_gene': 'RPS29P1', 'score': 0.29}]
chr14	GH14I068778	68778014	68798428	2.87	[{'connected_gene': 'ZFP36L1', 'score': 552.44}, {'connected_gene': 'DCAF5', 'score': 29.07}, {'connected_gene': 'ZFYVE26', 'score': 22.93}, {'connected_gene': 'SRSF5', 'score': 19.4}, {'connected_gene': 'SUSD6', 'score': 18.14}, {'connected_gene': 'DDX18P1', 'score': 12.61}, {'connected_gene': 'RNU6-921P', 'score': 11.8}, {'connected_gene': 'GC14M068736', 'score': 0.23}, {'connected_gene': 'GC14M068442', 'score': 0.12}]
chr14	GH14I068834	68834684	68835057	0.26	[{'connected_gene': 'ZFP36L1', 'score': 1.56}, {'connected_gene': 'DCAF5', 'score': 1.46}, {'connected_gene': 'GC14P068845', 'score': 0.39}, {'connected_gene': 'GC14M068442', 'score': 0.18}]
chr14	GH14I068818	68818299	68823313	1.62	[{'connected_gene': 'ZFP36L1', 'score': 12.85}, {'connected_gene': 'DCAF5', 'score': 4.17}, {'connected_gene': 'GC14P068845', 'score': 0.34}, {'connected_gene': 'GC14M068442', 'score': 0.15}]
chr14	GH14I068592	68592768	68601282	1.6	[{'connected_gene': 'ZFP36L1', 'score': 7.56}, {'connected_gene': 'GC14P068562', 'score': 0.29}, {'connected_gene': 'ENSG00000258623', 'score': 0.17}, {'connected_gene': 'GC14M068442', 'score': 0.05}, {'connected_gene': 'RAD51B', 'score': 0.03}]
chr14	GH14I068574	68574757	68581589	1.57	[{'connected_gene': 'ZFP36L1', 'score': 4.39}, {'connected_gene': 'GC14P068562', 'score': 0.37}, {'connected_gene': 'ENSG00000258623', 'score': 0.14}, {'connected_gene': 'GC14M068442', 'score': 0.05}, {'connected_gene': 'RAD51B', 'score': 0.03}]
chr14	GH14I068237	68237918	68253208	1.54	[{'connected_gene': 'ZFP36L1', 'score': 12.18}, {'connected_gene': 'RN7SL108P', 'score': 0.44}, {'connected_gene': 'GC14P068302', 'score': 0.22}, {'connected_gene': 'RAD51B', 'score': 0.04}]
chr14	GH14I068766	68766603	68767351	0.38	[{'connected_gene': 'ZFP36L1', 'score': 0.31}, {'connected_gene': 'RNU6-921P', 'score': 0.29}, {'connected_gene': 'GC14M068736', 'score': 0.29}, {'connected_gene': 'GC14M068442', 'score': 0.1}]
chr14	GH14I068768	68768448	68768598	0.33	[{'connected_gene': 'ZFP36L1', 'score': 0.31}, {'connected_gene': 'RNU6-921P', 'score': 0.29}, {'connected_gene': 'GC14M068736', 'score': 0.29}, {'connected_gene': 'GC14M068442', 'score': 0.1}]
chr14	GH14I068388	68388608	68398983	1.48	[{'connected_gene': 'ZFP36L1', 'score': 1.52}, {'connected_gene': 'LOC101927971', 'score': 0.39}, {'connected_gene': 'GC14P068364', 'score': 0.31}, {'connected_gene': 'RAD51B', 'score': 0.03}]
chr14	GH14I068798	68798531	68799324	0.31	[{'connected_gene': 'ZFP36L1', 'score': 0.77}, {'connected_gene': 'GC14P068845', 'score': 0.25}, {'connected_gene': 'GC14M068442', 'score': 0.13}]
chr14	GH14I068804	68804475	68810893	1.18	[{'connected_gene': 'ZFP36L1', 'score': 0.39}, {'connected_gene': 'GC14P068845', 'score': 0.28}, {'connected_gene': 'GC14M068442', 'score': 0.14}]
chr14	GH14I068800	68800383	68801213	0.79	[{'connected_gene': 'ZFP36L1', 'score': 0.77}, {'connected_gene': 'GC14P068845', 'score': 0.25}, {'connected_gene': 'GC14M068442', 'score': 0.13}]
chr14	GH14I068811	68811183	68817978	1.74	[{'connected_gene': 'SRSF5', 'score': 10.0}, {'connected_gene': 'DCAF5', 'score': 1.94}, {'connected_gene': 'ZFP36L1', 'score': 0.37}, {'connected_gene': 'GC14P068845', 'score': 0.29}, {'connected_gene': 'GC14M068442', 'score': 0.14}]
chr14	GH14I068824	68824316	68825277	1.42	[{'connected_gene': 'SRSF5', 'score': 19.68}, {'connected_gene': 'ERH', 'score': 9.68}, {'connected_gene': 'GC14P068845', 'score': 0.34}, {'connected_gene': 'ZFP36L1', 'score': 0.31}, {'connected_gene': 'GC14M068442', 'score': 0.16}]
chr14	GH14I068755	68755977	68761156	1.55	[{'connected_gene': 'RNU6-921P', 'score': 12.3}, {'connected_gene': 'ZFP36L1', 'score': 2.17}, {'connected_gene': 'DCAF5', 'score': 1.27}, {'connected_gene': 'GC14M068736', 'score': 0.34}, {'connected_gene': 'GC14M068442', 'score': 0.1}]
chr14	GH14I068771	68771332	68773534	1.15	[{'connected_gene': 'RNU6-921P', 'score': 11.85}, {'connected_gene': 'ZFP36L1', 'score': 0.34}, {'connected_gene': 'GC14M068736', 'score': 0.28}, {'connected_gene': 'GC14M068442', 'score': 0.11}]
chr14	GH14I068774	68774084	68776295	1.38	[{'connected_gene': 'RNU6-921P', 'score': 11.85}, {'connected_gene': 'ZFP36L1', 'score': 0.34}, {'connected_gene': 'GC14M068736', 'score': 0.28}, {'connected_gene': 'GC14M068442', 'score': 0.11}]
chr14	GH14I068754	68754115	68754973	0.75	[{'connected_gene': 'RNU6-921P', 'score': 0.37}, {'connected_gene': 'GC14M068736', 'score': 0.37}, {'connected_gene': 'ZFP36L1', 'score': 0.26}, {'connected_gene': 'GC14M068442', 'score': 0.1}]
chr14	GH14I068762	68762336	68764103	1.33	[{'connected_gene': 'RNU6-921P', 'score': 11.05}, {'connected_gene': 'GC14M068736', 'score': 0.31}, {'connected_gene': 'ZFP36L1', 'score': 0.29}, {'connected_gene': 'GC14M068442', 'score': 0.1}]
chr14	GH14I068741	68741284	68741433	0.56	[{'connected_gene': 'RNU6-921P', 'score': 0.44}, {'connected_gene': 'GC14M068736', 'score': 0.44}, {'connected_gene': 'ZFP36L1', 'score': 0.23}, {'connected_gene': 'GC14M068442', 'score': 0.1}]
chr14	GH14I068764	68764715	68765066	0.31	[{'connected_gene': 'RNU6-921P', 'score': 0.31}, {'connected_gene': 'GC14M068736', 'score': 0.31}, {'connected_gene': 'ZFP36L1', 'score': 0.29}, {'connected_gene': 'GC14M068442', 'score': 0.1}]
chr14	GH14I068742	68741727	68742463	0.82	[{'connected_gene': 'RNU6-921P', 'score': 0.44}, {'connected_gene': 'GC14M068736', 'score': 0.44}, {'connected_gene': 'ZFP36L1', 'score': 0.23}, {'connected_gene': 'GC14M068442', 'score': 0.1}]
chr14	GH14I068761	68761304	68761839	0.2	[{'connected_gene': 'RNU6-921P', 'score': 12.28}, {'connected_gene': 'GC14M068736', 'score': 0.31}, {'connected_gene': 'ZFP36L1', 'score': 0.29}, {'connected_gene': 'GC14M068442', 'score': 0.1}]
chr14	GH14I068713	68713248	68715821	1.29	[{'connected_gene': 'ENSG00000258623', 'score': 5.47}, {'connected_gene': 'ZFP36L1', 'score': 1.26}, {'connected_gene': 'RNU6-921P', 'score': 0.34}, {'connected_gene': 'GC14P068694', 'score': 0.34}, {'connected_gene': 'GC14M068736', 'score': 0.34}, {'connected_gene': 'GC14M068442', 'score': 0.08}, {'connected_gene': 'RAD51B', 'score': 0.03}]
chr14	GH14I068840	68840711	68842713	0.63	[{'connected_gene': 'GC14P068845', 'score': 0.77}, {'connected_gene': 'ZFP36L1', 'score': 0.25}, {'connected_gene': 'GC14M068442', 'score': 0.18}]
chr14	GH14I068826	68825904	68826053	0.83	[{'connected_gene': 'GC14P068845', 'score': 0.37}, {'connected_gene': 'ZFP36L1', 'score': 0.31}, {'connected_gene': 'GC14M068442', 'score': 0.16}]
chr14	GH14I068825	68825540	68825573	0.51	[{'connected_gene': 'GC14P068845', 'score': 0.34}, {'connected_gene': 'ZFP36L1', 'score': 0.31}, {'connected_gene': 'GC14M068442', 'score': 0.16}]
chr14	GH14I068843	68843119	68844543	0.94	[{'connected_gene': 'GC14P068845', 'score': 550.77}, {'connected_gene': 'SRSF5', 'score': 17.62}, {'connected_gene': 'SUSD6', 'score': 14.71}, {'connected_gene': 'DCAF5', 'score': 14.35}, {'connected_gene': 'DDX18P1', 'score': 13.8}, {'connected_gene': 'ACTN1', 'score': 5.1}, {'connected_gene': 'ZFP36L1', 'score': 0.25}, {'connected_gene': 'GC14M068442', 'score': 0.18}]
chr14	GH14I068732	68732951	68737800	1.26	[{'connected_gene': 'GC14M068736', 'score': 550.77}, {'connected_gene': 'RNU6-921P', 'score': 550.77}, {'connected_gene': 'ZFYVE26', 'score': 17.11}, {'connected_gene': 'DCAF5', 'score': 15.72}, {'connected_gene': 'SRSF5', 'score': 13.96}, {'connected_gene': 'DDX18P1', 'score': 12.8}, {'connected_gene': 'SUSD6', 'score': 12.21}, {'connected_gene': 'ZFP36L1', 'score': 10.84}, {'connected_gene': 'ENSG00000258623', 'score': 5.38}, {'connected_gene': 'GC14P068694', 'score': 0.26}, {'connected_gene': 'GC14M068442', 'score': 0.09}]
chr14	GH14I068679	68679184	68691273	1.61	[{'connected_gene': 'ENSG00000258623', 'score': 550.77}, {'connected_gene': 'LOC100996664', 'score': 550.77}, {'connected_gene': 'EXD2', 'score': 16.38}, {'connected_gene': 'ZFYVE26', 'score': 12.69}, {'connected_gene': 'DCAF5', 'score': 11.48}, {'connected_gene': 'RNU6-921P', 'score': 11.28}, {'connected_gene': 'PLEKHD1', 'score': 4.76}, {'connected_gene': 'SUSD6', 'score': 4.59}, {'connected_gene': 'ZFP36L1', 'score': 4.21}, {'connected_gene': 'GC14P068562', 'score': 0.13}, {'connected_gene': 'GC14M068442', 'score': 0.07}, {'connected_gene': 'RAD51B', 'score': 0.03}]