PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000290271	[[23699427, 23702553], [23708832, 23709044], [23709754, 23709897], [23711918, 23712320]]	[[23702282, 23702553], [23708832, 23709044], [23709754, 23709897], [23711918, 23712036]]
ENST00000524323	[[23701426, 23702553], [23708832, 23709044], [23709754, 23709897], [23711558, 23711824]]	[[23702282, 23702553], [23708832, 23709044], [23709754, 23709808]]
NM_003155	[[23699433, 23702553], [23708832, 23709044], [23709754, 23709897], [23711918, 23712320]]	[[23702282, 23702553], [23708832, 23709044], [23709754, 23709897], [23711918, 23712036]]

Promoter

Chrom	Start	End	Description
chr8	23699989	23700003	CAGE_peak_2_at_STC1_5end
chr8	23700042	23700103	CAGE_peak_4_at_STC1_5end
chr8	23700304	23700316	CAGE_peak_7_at_STC1_5end
chr8	23700350	23700367	CAGE_peak_9_at_STC1_5end
chr8	23700484	23700506	CAGE_peak_6_at_STC1_5end
chr8	23711581	23711630	CAGE_peak_5_at_STC1_5end
chr8	23711991	23712006	CAGE_peak_8_at_STC1_5end
chr8	23712012	23712048	CAGE_peak_3_at_STC1_5end
chr8	23712312	23712328	CAGE_peak_1_at_STC1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I023538	23538165	23543672	1.61	[{'connected_gene': 'ENTPD4', 'score': 28.37}, {'connected_gene': 'ENSG00000253200', 'score': 17.04}, {'connected_gene': 'C8orf58', 'score': 13.65}, {'connected_gene': 'BIN3', 'score': 13.55}, {'connected_gene': 'LOC107986927', 'score': 13.12}, {'connected_gene': 'CHMP7', 'score': 12.1}, {'connected_gene': 'ENSG00000253390', 'score': 10.83}, {'connected_gene': 'SLC25A37', 'score': 8.22}, {'connected_gene': 'STC1', 'score': 5.14}, {'connected_gene': 'TNFRSF10B', 'score': 3.56}, {'connected_gene': 'TNFRSF10C', 'score': 3.21}, {'connected_gene': 'GC08M023551', 'score': 0.39}]
chr8	GH08I023891	23891811	23893497	0.58	[{'connected_gene': 'STC1', 'score': 10.83}, {'connected_gene': 'NKX3-1', 'score': 9.83}, {'connected_gene': 'GC08P023881', 'score': 0.39}, {'connected_gene': 'GC08P023963', 'score': 0.19}]
chr8	GH08I023888	23888986	23890731	0.77	[{'connected_gene': 'STC1', 'score': 10.83}, {'connected_gene': 'NKX3-1', 'score': 9.83}, {'connected_gene': 'GC08P023881', 'score': 0.44}, {'connected_gene': 'GC08P023963', 'score': 0.19}]
chr8	GH08I023987	23987005	23987140	0.22	[{'connected_gene': 'STC1', 'score': 10.05}, {'connected_gene': 'GC08P023963', 'score': 0.34}, {'connected_gene': 'GC08M024077', 'score': 0.16}, {'connected_gene': 'RNU1-148P', 'score': 0.16}]
chr8	GH08I023974	23974043	23975582	0.65	[{'connected_gene': 'STC1', 'score': 10.3}, {'connected_gene': 'GC08P023963', 'score': 0.39}, {'connected_gene': 'GC08M024077', 'score': 0.15}, {'connected_gene': 'RNU1-148P', 'score': 0.15}]
chr8	GH08I023977	23977076	23980723	0.91	[{'connected_gene': 'STC1', 'score': 10.37}, {'connected_gene': 'GC08P023963', 'score': 0.37}, {'connected_gene': 'GC08M024077', 'score': 0.15}, {'connected_gene': 'RNU1-148P', 'score': 0.15}]
chr8	GH08I024152	24152654	24157250	1.18	[{'connected_gene': 'STC1', 'score': 12.48}, {'connected_gene': 'ENSG00000253891', 'score': 0.34}, {'connected_gene': 'LOC105379328', 'score': 0.21}, {'connected_gene': 'GC08P024089', 'score': 0.2}]
chr8	GH08I023796	23796799	23799772	1.22	[{'connected_gene': 'STC1', 'score': 12.35}, {'connected_gene': 'ENSG00000271118', 'score': 0.44}, {'connected_gene': 'LOC101929258', 'score': 0.22}]
chr8	GH08I023828	23828008	23828137	0.31	[{'connected_gene': 'STC1', 'score': 11.38}, {'connected_gene': 'GC08M023807', 'score': 0.34}, {'connected_gene': 'ENSG00000207027', 'score': 0.34}]
chr8	GH08I024216	24216771	24219912	1.23	[{'connected_gene': 'STC1', 'score': 10.36}, {'connected_gene': 'GC08M024201', 'score': 0.39}, {'connected_gene': 'GC08M024224', 'score': 0.39}, {'connected_gene': 'GC08P024089', 'score': 0.13}]
chr8	GH08I023932	23932068	23932217	0.43	[{'connected_gene': 'STC1', 'score': 10.86}, {'connected_gene': 'GC08P023963', 'score': 0.29}, {'connected_gene': 'GC08P023881', 'score': 0.23}]
chr8	GH08I024194	24194588	24194757	0.82	[{'connected_gene': 'STC1', 'score': 10.76}, {'connected_gene': 'GC08M024201', 'score': 0.39}, {'connected_gene': 'ENSG00000253891', 'score': 0.37}, {'connected_gene': 'GC08P024089', 'score': 0.14}]
chr8	GH08I023853	23853185	23855001	2	[{'connected_gene': 'STC1', 'score': 554.64}, {'connected_gene': 'GC08M023807', 'score': 0.25}, {'connected_gene': 'ENSG00000207027', 'score': 0.25}]
chr8	GH08I023898	23898008	23898094	0.56	[{'connected_gene': 'STC1', 'score': 10.79}, {'connected_gene': 'GC08P023881', 'score': 0.37}, {'connected_gene': 'GC08P023963', 'score': 0.2}]
chr8	GH08I023896	23896710	23897933	0.59	[{'connected_gene': 'STC1', 'score': 10.79}, {'connected_gene': 'GC08P023881', 'score': 0.37}, {'connected_gene': 'GC08P023963', 'score': 0.2}]
chr8	GH08I023918	23918113	23918808	0.38	[{'connected_gene': 'STC1', 'score': 10.66}, {'connected_gene': 'GC08P023881', 'score': 0.28}, {'connected_gene': 'GC08P023963', 'score': 0.26}]
chr8	GH08I024191	24191896	24194166	0.79	[{'connected_gene': 'STC1', 'score': 10.76}, {'connected_gene': 'GC08M024201', 'score': 0.37}, {'connected_gene': 'ENSG00000253891', 'score': 0.37}, {'connected_gene': 'GC08P024089', 'score': 0.15}]
chr8	GH08I023859	23859408	23859517	0.54	[{'connected_gene': 'STC1', 'score': 0.77}, {'connected_gene': 'GC08P023881', 'score': 0.34}]
chr8	GH08I023861	23861080	23862461	0.38	[{'connected_gene': 'STC1', 'score': 0.44}, {'connected_gene': 'GC08P023881', 'score': 0.37}]
chr8	GH08I023760	23760818	23763735	1.53	[{'connected_gene': 'NKX3-1', 'score': 11.05}, {'connected_gene': 'STC1', 'score': 10.17}, {'connected_gene': 'SLC25A37', 'score': 9.66}, {'connected_gene': 'ENTPD4', 'score': 2.04}, {'connected_gene': 'LOC101929258', 'score': 0.37}, {'connected_gene': 'ENSG00000271118', 'score': 0.26}, {'connected_gene': 'ENSG00000253471', 'score': 0.22}]
chr8	GH08I023960	23960689	23962065	0.31	[{'connected_gene': 'GC08P023963', 'score': 550.77}, {'connected_gene': 'STC1', 'score': 10.71}, {'connected_gene': 'GC08P023881', 'score': 0.18}]
chr8	GH08I023850	23850468	23850657	0.2	[{'connected_gene': 'ENSG00000207027', 'score': 10.28}, {'connected_gene': 'STC1', 'score': 0.77}, {'connected_gene': 'GC08M023807', 'score': 0.26}]
chr8	GH08I023842	23842007	23842210	0.4	[{'connected_gene': 'ENSG00000207027', 'score': 10.91}, {'connected_gene': 'STC1', 'score': 0.39}, {'connected_gene': 'GC08M023807', 'score': 0.28}]
chr8	GH08I023880	23880948	23881792	0.51	[{'connected_gene': 'GC08P023881', 'score': 550.77}, {'connected_gene': 'STC1', 'score': 11.38}, {'connected_gene': 'GC08P023963', 'score': 0.18}]
chr8	GH08I023848	23848768	23849298	0.31	[{'connected_gene': 'ENSG00000207027', 'score': 10.52}, {'connected_gene': 'STC1', 'score': 4.59}, {'connected_gene': 'GC08M023807', 'score': 0.26}]