PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000442123	[[53196897, 53196928], [53197176, 53197249], [53211569, 53211602], [53213143, 53213197], [53217400, 53217498], [53223268, 53223329], [53224036, 53224073], [53224460, 53224500], [53224591, 53224642], [53226399, 53226472], [53235557, 53235651], [53237750, 53241659]]	[[53197192, 53197249], [53211569, 53211602], [53213143, 53213197], [53217400, 53217498], [53223268, 53223329], [53224036, 53224073], [53224460, 53224500], [53224591, 53224642], [53226399, 53226472], [53235557, 53235651], [53237750, 53237824]]
ENST00000354586	[[53196899, 53197249], [53211569, 53211602], [53213143, 53213197], [53217400, 53217498], [53223268, 53223329], [53224036, 53224073], [53224460, 53224500], [53224591, 53224642], [53226399, 53226472], [53235557, 53235651], [53237750, 53241716]]	[[53197192, 53197249], [53211569, 53211602], [53213143, 53213197], [53217400, 53217498], [53223268, 53223329], [53224036, 53224073], [53224460, 53224500], [53224591, 53224642], [53226399, 53226472], [53235557, 53235651], [53237750, 53237824]]
ENST00000556861	[[53198311, 53198430], [53240333, 53241054]]	None
NM_001130701	[[53196882, 53196928], [53197176, 53197249], [53211569, 53211602], [53213143, 53213197], [53217400, 53217498], [53223268, 53223329], [53224036, 53224073], [53224460, 53224500], [53224591, 53224642], [53226399, 53226472], [53235557, 53235651], [53237750, 53241707]]	[[53197192, 53197249], [53211569, 53211602], [53213143, 53213197], [53217400, 53217498], [53223268, 53223329], [53224036, 53224073], [53224460, 53224500], [53224591, 53224642], [53226399, 53226472], [53235557, 53235651], [53237750, 53237824]]
NM_145251	[[53196882, 53197249], [53211569, 53211602], [53213143, 53213197], [53217400, 53217498], [53223268, 53223329], [53224036, 53224073], [53224460, 53224500], [53224591, 53224642], [53226399, 53226472], [53235557, 53235651], [53237750, 53241707]]	[[53197192, 53197249], [53211569, 53211602], [53213143, 53213197], [53217400, 53217498], [53223268, 53223329], [53224036, 53224073], [53224460, 53224500], [53224591, 53224642], [53226399, 53226472], [53235557, 53235651], [53237750, 53237824]]

Promoter

Chrom	Start	End	Description
chr14	53196872	53196959	CAGE_peak_1_at_STYX_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I052997	52997513	52999412	0.51	[{'connected_gene': 'STYX', 'score': 4.2}, {'connected_gene': 'NDUFB3P3', 'score': 0.39}, {'connected_gene': 'PIR46154', 'score': 0.26}]
chr14	GH14I052800	52800358	52803361	0.96	[{'connected_gene': 'STYX', 'score': 16.85}, {'connected_gene': 'PTGER2', 'score': 1.7}, {'connected_gene': 'LOC100288978', 'score': 0.77}, {'connected_gene': 'LOC105370500', 'score': 0.39}, {'connected_gene': 'ENSG00000258698', 'score': 0.37}]
chr14	GH14I052702	52702843	52704176	0.79	[{'connected_gene': 'STYX', 'score': 25.07}, {'connected_gene': 'PSMC6', 'score': 0.77}, {'connected_gene': 'ERO1A', 'score': 0.44}]
chr14	GH14I052740	52740645	52743999	0.69	[{'connected_gene': 'STYX', 'score': 24.42}, {'connected_gene': 'PSMC6', 'score': 11.34}, {'connected_gene': 'ERO1A', 'score': 10.99}, {'connected_gene': 'ENSG00000259049', 'score': 0.29}]
chr14	GH14I052922	52922583	52925235	1.07	[{'connected_gene': 'STYX', 'score': 5.44}, {'connected_gene': 'RTRAF', 'score': 5.01}, {'connected_gene': 'ENSG00000258985', 'score': 4.65}, {'connected_gene': 'FERMT2', 'score': 0.31}, {'connected_gene': 'GC14P052872', 'score': 0.23}, {'connected_gene': 'LOC105370500', 'score': 0.12}]
chr14	GH14I052699	52699544	52702179	0.98	[{'connected_gene': 'STYX', 'score': 29.47}, {'connected_gene': 'ERO1A', 'score': 5.93}, {'connected_gene': 'PSMC6', 'score': 0.44}]
chr14	GH14I052844	52844218	52845877	1.09	[{'connected_gene': 'STYX', 'score': 4.74}, {'connected_gene': 'FERMT2', 'score': 4.45}, {'connected_gene': 'GC14P052872', 'score': 0.31}, {'connected_gene': 'ENSG00000258698', 'score': 0.31}, {'connected_gene': 'LOC105370500', 'score': 0.23}]
chr14	GH14I052897	52897619	52900746	0.56	[{'connected_gene': 'STYX', 'score': 6.37}, {'connected_gene': 'GC14P052872', 'score': 0.31}, {'connected_gene': 'FERMT2', 'score': 0.23}, {'connected_gene': 'LOC105370500', 'score': 0.14}]
chr14	GH14I052848	52848304	52849414	0.31	[{'connected_gene': 'STYX', 'score': 5.68}, {'connected_gene': 'FERMT2', 'score': 4.5}, {'connected_gene': 'GC14P052872', 'score': 0.34}, {'connected_gene': 'ENSG00000258698', 'score': 0.31}, {'connected_gene': 'LOC105370500', 'score': 0.22}]
chr14	GH14I052852	52852591	52853786	1.28	[{'connected_gene': 'STYX', 'score': 4.64}, {'connected_gene': 'FERMT2', 'score': 4.46}, {'connected_gene': 'GC14P052872', 'score': 0.37}, {'connected_gene': 'ENSG00000258698', 'score': 0.29}, {'connected_gene': 'LOC105370500', 'score': 0.21}]
chr14	GH14I052930	52930194	52942026	0.72	[{'connected_gene': 'STYX', 'score': 5.91}, {'connected_gene': 'FERMT2', 'score': 0.37}, {'connected_gene': 'GC14P052872', 'score': 0.21}, {'connected_gene': 'LOC105370500', 'score': 0.11}]
chr14	GH14I052894	52894878	52895341	0.88	[{'connected_gene': 'STYX', 'score': 5.8}, {'connected_gene': 'GC14P052872', 'score': 0.34}, {'connected_gene': 'FERMT2', 'score': 0.22}, {'connected_gene': 'LOC105370500', 'score': 0.15}]
chr14	GH14I052953	52953977	52955526	1.09	[{'connected_gene': 'STYX', 'score': 4.22}, {'connected_gene': 'FERMT2', 'score': 0.77}, {'connected_gene': 'PIR46154', 'score': 0.77}]
chr14	GH14I052868	52868336	52869947	0.49	[{'connected_gene': 'STYX', 'score': 6.0}, {'connected_gene': 'GC14P052872', 'score': 0.77}, {'connected_gene': 'ENSG00000258698', 'score': 0.25}, {'connected_gene': 'LOC105370500', 'score': 0.18}, {'connected_gene': 'FERMT2', 'score': 0.18}]
chr14	GH14I052729	52729229	52731431	2.01	[{'connected_gene': 'STYX', 'score': 574.84}, {'connected_gene': 'LOC105370500', 'score': 9.98}, {'connected_gene': 'ENSG00000259049', 'score': 0.26}]
chr14	GH14I052733	52733963	52734112	0.38	[{'connected_gene': 'STYX', 'score': 0.77}, {'connected_gene': 'ENSG00000259049', 'score': 0.26}]
chr14	GH14I052789	52789600	52792953	2.04	[{'connected_gene': 'GNPNAT1', 'score': 550.77}, {'connected_gene': 'LOC105370500', 'score': 550.77}, {'connected_gene': 'STYX', 'score': 22.25}, {'connected_gene': 'GC14P052785', 'score': 0.44}, {'connected_gene': 'ENSG00000258698', 'score': 0.31}]
chr14	GH14I052904	52904437	52909443	1.02	[{'connected_gene': 'TXNDC16', 'score': 6.88}, {'connected_gene': 'STYX', 'score': 6.13}, {'connected_gene': 'LOC101927620', 'score': 4.17}, {'connected_gene': 'GC14P052872', 'score': 0.28}, {'connected_gene': 'FERMT2', 'score': 0.25}, {'connected_gene': 'LOC105370500', 'score': 0.13}]
chr14	GH14I052706	52706117	52708531	1.98	[{'connected_gene': 'PSMC6', 'score': 550.77}, {'connected_gene': 'STYX', 'score': 22.8}]
chr14	GH14I052693	52693623	52699109	1.92	[{'connected_gene': 'ERO1A', 'score': 576.63}, {'connected_gene': 'STYX', 'score': 16.54}, {'connected_gene': 'PSMC6', 'score': 0.39}]
chr14	GH14I052912	52912744	52913996	0.43	[{'connected_gene': 'ERO1A', 'score': 9.89}, {'connected_gene': 'STYX', 'score': 5.94}, {'connected_gene': 'RTRAF', 'score': 4.57}, {'connected_gene': 'FERMT2', 'score': 0.28}, {'connected_gene': 'GC14P052872', 'score': 0.26}, {'connected_gene': 'LOC105370500', 'score': 0.13}]
chr14	GH14I052917	52917225	52920952	1.44	[{'connected_gene': 'ERO1A', 'score': 9.89}, {'connected_gene': 'STYX', 'score': 5.64}, {'connected_gene': 'LOC101927620', 'score': 4.4}, {'connected_gene': 'DDHD1', 'score': 3.68}, {'connected_gene': 'FERMT2', 'score': 0.29}, {'connected_gene': 'GC14P052872', 'score': 0.25}, {'connected_gene': 'LOC105370500', 'score': 0.13}]
chr14	GH14I052948	52948955	52953114	2.39	[{'connected_gene': 'FERMT2', 'score': 550.77}, {'connected_gene': 'STYX', 'score': 5.65}, {'connected_gene': 'GPR137C', 'score': 1.35}, {'connected_gene': 'GC14P052872', 'score': 0.18}]