PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000371884	[[47681961, 47685846], [47689675, 47689770], [47691114, 47691561], [47694867, 47695023], [47697328, 47697387]]	[[47685391, 47685846], [47689675, 47689770]]
ENST00000371883	[[47681962, 47685846], [47689675, 47689776], [47691114, 47691561], [47694867, 47695443]]	[[47685391, 47685846], [47689675, 47689776]]
ENST00000294339	[[47681963, 47685846], [47689675, 47689770], [47691114, 47691561], [47694867, 47695443]]	[[47685391, 47685846], [47689675, 47689770]]
ENST00000459729	[[47684359, 47685846], [47689055, 47689291], [47689675, 47689748]]	None
ENST00000464796	[[47689743, 47689770], [47694867, 47695023], [47697838, 47697892]]	None
ENST00000481091	[[47694018, 47694194], [47694867, 47695023], [47696718, 47696890]]	None
ENST00000465912	[[47694019, 47694194], [47694867, 47695125]]	None
NM_001287347	[[47681961, 47685846], [47689675, 47689770], [47691114, 47691561], [47694867, 47695023], [47697328, 47697387]]	[[47685391, 47685846], [47689675, 47689770]]
NM_001290404	[[47681961, 47685846], [47689675, 47689770], [47691114, 47691561], [47694867, 47695023], [47696581, 47696713], [47697519, 47697561]]	[[47685391, 47685846], [47689675, 47689770]]
NM_001290405	[[47681961, 47685846], [47689675, 47689770], [47691114, 47691561], [47694867, 47695023], [47697519, 47697561]]	[[47685391, 47685846], [47689675, 47689770]]
NM_003189	[[47681961, 47685846], [47689675, 47689770], [47691114, 47691561], [47694867, 47695023], [47695325, 47695443], [47697838, 47698007]]	[[47685391, 47685846], [47689675, 47689770]]
NM_001290403	[[47681961, 47685846], [47689675, 47689770], [47691114, 47691561], [47694867, 47695023], [47697838, 47698007]]	[[47685391, 47685846], [47689675, 47689770]]
NM_001290406	[[47681961, 47685846], [47689675, 47689770], [47697838, 47698007]]	[[47685391, 47685846], [47689675, 47689739]]

Promoter

Chrom	Start	End	Description
chr1	47691303	47691319	CAGE_peak_5_at_TAL1_5end
chr1	47694935	47694944	CAGE_peak_15_at_TAL1_5end
chr1	47695003	47695042	CAGE_peak_2_at_TAL1_5end
chr1	47695156	47695179	CAGE_peak_10_at_TAL1_5end
chr1	47695202	47695211	CAGE_peak_16_at_TAL1_5end
chr1	47696918	47696935	CAGE_peak_6_at_TAL1_5end
chr1	47697439	47697457	CAGE_peak_9_at_TAL1_5end
chr1	47697539	47697573	CAGE_peak_3_at_TAL1_5end
chr1	47697591	47697604	CAGE_peak_11_at_TAL1_5end
chr1	47697859	47697869	CAGE_peak_14_at_TAL1_5end
chr1	47697881	47697910	CAGE_peak_4_at_TAL1_5end
chr1	47697965	47697991	CAGE_peak_7_at_TAL1_5end
chr1	47698007	47698019	CAGE_peak_13_at_TAL1_5end
chr1	47779762	47779827	CAGE_peak_1_at_STIL_5end,CAGE_peak_1_at_TAL1_5end
chr1	47779845	47779848	CAGE_peak_3_at_STIL_5end,CAGE_peak_8_at_TAL1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I047320	47320172	47321063	0.6	[{'connected_gene': 'TAL1', 'score': 11.64}, {'connected_gene': 'ENSG00000226252', 'score': 10.23}, {'connected_gene': 'GC01M047322', 'score': 0.77}, {'connected_gene': 'STIL', 'score': 0.44}]
chr1	GH01I047253	47253511	47254946	0.72	[{'connected_gene': 'TAL1', 'score': 12.44}, {'connected_gene': 'ENSG00000226252', 'score': 12.42}, {'connected_gene': 'CMPK1', 'score': 11.96}, {'connected_gene': 'LINC00853', 'score': 11.03}, {'connected_gene': 'CYP4A22-AS1', 'score': 11.03}, {'connected_gene': 'FOXD2-AS1', 'score': 9.64}, {'connected_gene': 'FOXD2', 'score': 9.64}, {'connected_gene': 'GC01M047285', 'score': 0.29}, {'connected_gene': 'STIL', 'score': 0.21}]
chr1	GH01I047193	47193694	47194992	0.56	[{'connected_gene': 'TAL1', 'score': 19.29}, {'connected_gene': 'ENSG00000226252', 'score': 12.94}, {'connected_gene': 'FOXE3', 'score': 9.69}, {'connected_gene': 'LINC01389', 'score': 9.68}, {'connected_gene': 'CYP4A22', 'score': 4.52}, {'connected_gene': 'PDZK1IP1', 'score': 0.77}, {'connected_gene': 'GC01M047220', 'score': 0.31}]
chr1	GH01I047224	47224506	47233276	2.17	[{'connected_gene': 'TAL1', 'score': 567.65}, {'connected_gene': 'LRRC41', 'score': 14.7}, {'connected_gene': 'PDZK1IP1', 'score': 13.24}, {'connected_gene': 'LINC01389', 'score': 11.0}, {'connected_gene': 'NSUN4', 'score': 10.91}, {'connected_gene': 'EFCAB14-AS1', 'score': 10.18}, {'connected_gene': 'FOXE3', 'score': 7.15}, {'connected_gene': 'ENSG00000226252', 'score': 0.77}]
chr1	GH01I047234	47234786	47236154	1.07	[{'connected_gene': 'TAL1', 'score': 2.07}, {'connected_gene': 'GC01M047285', 'score': 0.23}]
chr1	GH01I047233	47233622	47233931	0.74	[{'connected_gene': 'TAL1', 'score': 550.77}, {'connected_gene': 'GC01M047285', 'score': 0.23}]
chr1	GH01I047252	47252433	47252753	0.53	[{'connected_gene': 'CMPK1', 'score': 15.85}, {'connected_gene': 'TAL1', 'score': 12.44}, {'connected_gene': 'ENSG00000226252', 'score': 12.42}, {'connected_gene': 'LINC00853', 'score': 11.03}, {'connected_gene': 'CYP4A22-AS1', 'score': 11.03}, {'connected_gene': 'FOXD2-AS1', 'score': 9.65}, {'connected_gene': 'FOXD2', 'score': 9.65}, {'connected_gene': 'GC01M047285', 'score': 0.29}, {'connected_gene': 'STIL', 'score': 0.21}]
chr1	GH01I047332	47332179	47336398	2.53	[{'connected_gene': 'CMPK1', 'score': 563.39}, {'connected_gene': 'ENSG00000226252', 'score': 16.74}, {'connected_gene': 'FOXE3', 'score': 16.2}, {'connected_gene': 'TAL1', 'score': 11.51}, {'connected_gene': 'LINC01389', 'score': 10.08}, {'connected_gene': 'PDZK1IP1', 'score': 6.51}, {'connected_gene': 'FOXD2', 'score': 4.62}, {'connected_gene': 'GC01P047350', 'score': 0.37}]
chr1	GH01I047211	47211339	47214008	1.54	[{'connected_gene': 'PDZK1IP1', 'score': 23.82}, {'connected_gene': 'TAL1', 'score': 6.62}, {'connected_gene': 'CMPK1', 'score': 4.44}, {'connected_gene': 'GC01M047220', 'score': 0.39}]
chr1	GH01I047188	47188961	47193508	1.88	[{'connected_gene': 'PDZK1IP1', 'score': 575.53}, {'connected_gene': 'ENSG00000226252', 'score': 12.94}, {'connected_gene': 'TAL1', 'score': 12.91}, {'connected_gene': 'FOXE3', 'score': 11.4}, {'connected_gene': 'LINC01389', 'score': 11.39}, {'connected_gene': 'FOXD2-AS1', 'score': 10.0}, {'connected_gene': 'FOXD2', 'score': 10.0}, {'connected_gene': 'GC01M047220', 'score': 0.29}]
chr1	GH01I047241	47241128	47242265	1.05	[{'connected_gene': 'PDZK1IP1', 'score': 9.6}, {'connected_gene': 'TAL1', 'score': 0.44}, {'connected_gene': 'GC01M047285', 'score': 0.25}]
chr1	GH01I047237	47237709	47237858	0.72	[{'connected_gene': 'PDZK1IP1', 'score': 10.42}, {'connected_gene': 'TAL1', 'score': 0.44}, {'connected_gene': 'GC01M047285', 'score': 0.25}]
chr1	GH01I047240	47240383	47240901	0.38	[{'connected_gene': 'PDZK1IP1', 'score': 9.73}, {'connected_gene': 'TAL1', 'score': 0.44}, {'connected_gene': 'GC01M047285', 'score': 0.25}]
chr1	GH01I047242	47242368	47243340	0.49	[{'connected_gene': 'PDZK1IP1', 'score': 11.01}, {'connected_gene': 'TAL1', 'score': 0.39}, {'connected_gene': 'GC01M047285', 'score': 0.26}]
chr1	GH01I047243	47243410	47244643	0.64	[{'connected_gene': 'PDZK1IP1', 'score': 6.53}, {'connected_gene': 'TAL1', 'score': 0.39}, {'connected_gene': 'GC01M047285', 'score': 0.26}]
chr1	GH01I047178	47178625	47183099	1.8	[{'connected_gene': 'LINC00853', 'score': 558.93}, {'connected_gene': 'CYP4A22-AS1', 'score': 550.77}, {'connected_gene': 'PDZK1IP1', 'score': 19.72}, {'connected_gene': 'EFCAB14-AS1', 'score': 18.89}, {'connected_gene': 'TAL1', 'score': 16.25}, {'connected_gene': 'LRRC41', 'score': 15.07}, {'connected_gene': 'ENSG00000226252', 'score': 10.94}, {'connected_gene': 'MOB3C', 'score': 10.65}, {'connected_gene': 'CYP4B1', 'score': 10.6}, {'connected_gene': 'ENSG00000225028', 'score': 9.74}, {'connected_gene': 'CYP4A22', 'score': 7.63}]
chr1	GH01I047322	47322926	47326486	0.85	[{'connected_gene': 'GC01M047322', 'score': 550.77}, {'connected_gene': 'ENSG00000226252', 'score': 15.77}, {'connected_gene': 'CMPK1', 'score': 14.13}, {'connected_gene': 'TAL1', 'score': 11.04}, {'connected_gene': 'LINC00853', 'score': 10.15}, {'connected_gene': 'CYP4A22-AS1', 'score': 10.15}, {'connected_gene': 'FOXE3', 'score': 5.68}, {'connected_gene': 'GC01P047330', 'score': 0.44}]
chr1	GH01I047221	47221296	47221971	0.38	[{'connected_gene': 'GC01M047220', 'score': 550.77}, {'connected_gene': 'PDZK1IP1', 'score': 9.29}, {'connected_gene': 'TAL1', 'score': 0.39}]
chr1	GH01I047222	47222430	47224381	0.6	[{'connected_gene': 'GC01M047220', 'score': 550.77}, {'connected_gene': 'PDZK1IP1', 'score': 8.97}, {'connected_gene': 'ENSG00000226252', 'score': 0.77}, {'connected_gene': 'TAL1', 'score': 0.44}]