PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000349155	[[115108058, 115110107], [115111969, 115112640], [115114117, 115114275], [115115384, 115115461], [115117309, 115117456], [115118683, 115118951], [115120616, 115121969]]	[[115109645, 115110107], [115111969, 115112640], [115114117, 115114275], [115115384, 115115461], [115117309, 115117456], [115118683, 115118951], [115120616, 115121005]]
ENST00000257566	[[115108059, 115110107], [115111969, 115112640], [115114117, 115114275], [115115384, 115115461], [115117309, 115117456], [115117717, 115117777], [115118683, 115118951], [115120616, 115121395]]	[[115109645, 115110107], [115111969, 115112640], [115114117, 115114275], [115115384, 115115461], [115117309, 115117456], [115117717, 115117777], [115118683, 115118951], [115120616, 115121005]]
ENST00000548503	[[115115396, 115115461], [115117309, 115117738]]	None
ENST00000552054	[[115117760, 115118951], [115120616, 115121239]]	None
NM_016569	[[115108058, 115110107], [115111969, 115112640], [115114117, 115114275], [115115384, 115115461], [115117309, 115117456], [115117717, 115117777], [115118683, 115118951], [115120616, 115121969]]	[[115109645, 115110107], [115111969, 115112640], [115114117, 115114275], [115115384, 115115461], [115117309, 115117456], [115117717, 115117777], [115118683, 115118951], [115120616, 115121005]]
NM_005996	[[115108058, 115110107], [115111969, 115112640], [115114117, 115114275], [115115384, 115115461], [115117309, 115117456], [115118683, 115118951], [115120616, 115121969]]	[[115109645, 115110107], [115111969, 115112640], [115114117, 115114275], [115115384, 115115461], [115117309, 115117456], [115118683, 115118951], [115120616, 115121005]]

Promoter

Chrom	Start	End	Description
chr12	115121587	115121597	CAGE_peak_10_at_TBX3_5end
chr12	115121770	115121781	CAGE_peak_4_at_TBX3_5end
chr12	115121802	115121814	CAGE_peak_5_at_TBX3_5end
chr12	115121962	115121987	CAGE_peak_1_at_TBX3_5end
chr12	115122005	115122016	CAGE_peak_3_at_TBX3_5end
chr12	115122224	115122233	CAGE_peak_12_at_TBX3_5end
chr12	115122262	115122271	CAGE_peak_7_at_TBX3_5end
chr12	115122297	115122302	CAGE_peak_15_at_TBX3_5end
chr12	115122303	115122314	CAGE_peak_6_at_TBX3_5end
chr12	115122318	115122331	CAGE_peak_2_at_TBX3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I114663	114663952	114689575	3.13	[{'connected_gene': 'TBX3', 'score': 558.33}, {'connected_gene': 'RBM19', 'score': 66.64}, {'connected_gene': 'LOC105370000', 'score': 6.28}, {'connected_gene': 'GC12M114672', 'score': 0.77}, {'connected_gene': 'GC12P114687', 'score': 0.44}, {'connected_gene': 'GC12P114686', 'score': 0.44}, {'connected_gene': 'PIR34512', 'score': 0.44}, {'connected_gene': 'GC12P114684', 'score': 0.44}]
chr12	GH12I114742	114742051	114742820	0.4	[{'connected_gene': 'TBX3', 'score': 10.38}, {'connected_gene': 'ENSG00000252459', 'score': 0.77}, {'connected_gene': 'GC12P114750', 'score': 0.44}, {'connected_gene': 'LOC105370000', 'score': 0.31}]
chr12	GH12I114690	114690050	114693626	1.24	[{'connected_gene': 'TBX3', 'score': 8.74}, {'connected_gene': 'LOC105370000', 'score': 8.42}, {'connected_gene': 'GC12P114686', 'score': 0.44}]
chr12	GH12I114740	114740688	114741298	0.38	[{'connected_gene': 'TBX3', 'score': 10.53}, {'connected_gene': 'ENSG00000252459', 'score': 0.77}, {'connected_gene': 'GC12P114750', 'score': 0.44}, {'connected_gene': 'LOC105370000', 'score': 0.31}]
chr12	GH12I114744	114744135	114748196	0.92	[{'connected_gene': 'TBX3', 'score': 10.82}, {'connected_gene': 'GC12P114750', 'score': 0.77}, {'connected_gene': 'ENSG00000252459', 'score': 0.44}, {'connected_gene': 'LOC105370000', 'score': 0.29}]
chr12	GH12I114701	114701008	114701390	0.39	[{'connected_gene': 'TBX3', 'score': 1.65}, {'connected_gene': 'LOC105370000', 'score': 0.39}, {'connected_gene': 'GC12P114686', 'score': 0.37}]
chr12	GH12I114732	114732474	114732989	0.49	[{'connected_gene': 'TBX3', 'score': 10.72}, {'connected_gene': 'LOC105369999', 'score': 0.77}, {'connected_gene': 'LOC105370000', 'score': 0.37}]
chr12	GH12I114625	114625271	114626005	0.73	[{'connected_gene': 'TBX3', 'score': 10.03}, {'connected_gene': 'ENSG00000258254', 'score': 0.77}, {'connected_gene': 'GC12M114639', 'score': 0.37}]
chr12	GH12I114655	114655082	114659783	1.4	[{'connected_gene': 'ENSG00000199220', 'score': 550.77}, {'connected_gene': 'GC12M114659', 'score': 550.77}, {'connected_gene': 'RBM19', 'score': 41.15}, {'connected_gene': 'TBX3', 'score': 11.66}, {'connected_gene': 'GC12M114639', 'score': 0.37}]