PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000367882	[[134210275, 134210985], [134212850, 134216691]]	[[134210535, 134210985], [134212850, 134212940]]
ENST00000237316	[[134210472, 134210985], [134212850, 134212948], [134214292, 134216691]]	[[134210535, 134210985], [134212850, 134212940]]
NM_198392	[[134210258, 134210985], [134212850, 134212948], [134214292, 134216675]]	[[134210535, 134210985], [134212850, 134212940]]
NM_003206	[[134210259, 134210985], [134212850, 134213395]]	[[134210535, 134210985], [134212850, 134212940]]

Promoter

Chrom	Start	End	Description
chr6	134210243	134210257	CAGE_peak_1_at_TCF21_5end
chr6	134210625	134210636	CAGE_peak_6_at_TCF21_5end
chr6	134210772	134210782	CAGE_peak_8_at_TCF21_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I134040	134040410	134041914	0.66	[{'connected_gene': 'TBPL1', 'score': 10.54}, {'connected_gene': 'TCF21', 'score': 5.15}, {'connected_gene': 'SLC2A12', 'score': 0.39}, {'connected_gene': 'LOC100421250', 'score': 0.29}]
chr6	GH06I134097	134097243	134097372	0.59	[{'connected_gene': 'TBPL1', 'score': 11.54}, {'connected_gene': 'SLC2A12', 'score': 11.4}, {'connected_gene': 'TCF21', 'score': 10.63}, {'connected_gene': 'SGK1', 'score': 9.01}, {'connected_gene': 'HMGA1P7', 'score': 0.34}]
chr6	GH06I133924	133924063	133924232	0.77	[{'connected_gene': 'TBPL1', 'score': 12.41}, {'connected_gene': 'SLC2A12', 'score': 10.97}, {'connected_gene': 'TCF21', 'score': 9.94}, {'connected_gene': 'GC06M133913', 'score': 0.39}]
chr6	GH06I134034	134034473	134036846	1.23	[{'connected_gene': 'TCF21', 'score': 5.17}, {'connected_gene': 'SLC2A12', 'score': 0.37}, {'connected_gene': 'LOC100421250', 'score': 0.31}]
chr6	GH06I133837	133837602	133838464	1.09	[{'connected_gene': 'TCF21', 'score': 17.97}, {'connected_gene': 'LINC01312', 'score': 0.37}, {'connected_gene': 'TARID', 'score': 0.23}]
chr6	GH06I133887	133887957	133896782	1.72	[{'connected_gene': 'TCF21', 'score': 559.6}, {'connected_gene': 'TARID', 'score': 555.64}, {'connected_gene': 'TBPL1', 'score': 10.52}, {'connected_gene': 'SLC2A12', 'score': 10.12}]
chr6	GH06I133882	133882639	133883255	0.31	[{'connected_gene': 'TCF21', 'score': 10.32}, {'connected_gene': 'ENSG00000223542', 'score': 4.81}, {'connected_gene': 'TARID', 'score': 0.44}, {'connected_gene': 'LINC01312', 'score': 0.21}]
chr6	GH06I133885	133885285	133885465	0.2	[{'connected_gene': 'TCF21', 'score': 0.77}, {'connected_gene': 'TARID', 'score': 0.44}, {'connected_gene': 'LINC01312', 'score': 0.21}]
chr6	GH06I133880	133880829	133881106	0.2	[{'connected_gene': 'TCF21', 'score': 5.12}, {'connected_gene': 'TARID', 'score': 0.39}, {'connected_gene': 'LINC01312', 'score': 0.22}]
chr6	GH06I133884	133884202	133884596	0.2	[{'connected_gene': 'TCF21', 'score': 5.87}, {'connected_gene': 'TARID', 'score': 0.44}, {'connected_gene': 'LINC01312', 'score': 0.21}]
chr6	GH06I133568	133568741	133570292	1.34	[{'connected_gene': 'TCF21', 'score': 10.38}, {'connected_gene': 'TARID', 'score': 7.18}, {'connected_gene': 'ENSG00000272428', 'score': 0.31}, {'connected_gene': 'FTH1P26', 'score': 0.14}]