PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000358409	[[3068495, 3068647], [3069113, 3069206], [3103903, 3104158], [3120169, 3120234], [3121335, 3121398], [3127710, 3127754], [3128280, 3128336], [3129799, 3129939], [3131009, 3131183], [3147133, 3147274], [3149272, 3149425], [3149530, 3149831]]	[[3103932, 3104158], [3120169, 3120234], [3121335, 3121398], [3127710, 3127754], [3128280, 3128336], [3129799, 3129939], [3131009, 3131183], [3147133, 3147274], [3149272, 3149425], [3149530, 3149644]]
ENST00000359864	[[3068579, 3068647], [3069113, 3069206], [3103903, 3104158], [3120169, 3120234], [3121335, 3121398], [3126563, 3126692], [3127710, 3127754], [3128280, 3128336], [3129799, 3129939], [3131009, 3131183], [3147133, 3147274], [3149272, 3149425], [3149530, 3149839]]	[[3103932, 3104158], [3120169, 3120234], [3121335, 3121398], [3126563, 3126692], [3127710, 3127754], [3128280, 3128336], [3129799, 3129939], [3131009, 3131183], [3147133, 3147274], [3149272, 3149425], [3149530, 3149644]]
ENST00000397122	[[3069082, 3069206], [3120169, 3120234], [3121335, 3121398], [3126563, 3126692], [3127710, 3127754], [3128280, 3128336], [3129799, 3129939], [3131009, 3131183], [3147133, 3147274], [3149272, 3149425], [3149530, 3149837]]	[[3126596, 3126692], [3127710, 3127754], [3128280, 3128336], [3129799, 3129939], [3131009, 3131183], [3147133, 3147274], [3149272, 3149425], [3149530, 3149644]]
ENST00000540314	[[3068571, 3068647], [3069113, 3069519], [3103903, 3103999]]	[[3103932, 3103999]]
ENST00000536826	[[3068572, 3068647], [3069113, 3069362], [3103903, 3104149]]	[[3103932, 3104149]]
ENST00000543035	[[3068961, 3069206], [3103903, 3104158], [3120169, 3120234], [3121335, 3121398], [3126563, 3126692], [3127710, 3127754]]	[[3103932, 3104158], [3120169, 3120234], [3121335, 3121398], [3126563, 3126692], [3127710, 3127754]]
ENST00000443986	[[3069109, 3069206], [3103903, 3104158], [3121335, 3121398], [3127710, 3127754], [3128280, 3128336], [3129799, 3129925]]	[[3103932, 3104158], [3121335, 3121398], [3127710, 3127754]]
ENST00000544666	[[3120209, 3120234], [3121335, 3121398], [3126228, 3126261], [3126563, 3126692], [3127710, 3127754], [3128280, 3128336], [3129799, 3129939], [3131009, 3131086]]	[[3120209, 3120234], [3121335, 3121398], [3126228, 3126261], [3126563, 3126692], [3127710, 3127754], [3128280, 3128336], [3129799, 3129939], [3131009, 3131086]]
NM_201441	[[3068477, 3068647], [3069113, 3069206], [3103903, 3104158], [3120169, 3120234], [3121335, 3121398], [3127710, 3127754], [3128280, 3128336], [3129799, 3129939], [3131009, 3131183], [3147133, 3147274], [3149272, 3149425], [3149530, 3149842]]	[[3103932, 3104158], [3120169, 3120234], [3121335, 3121398], [3127710, 3127754], [3128280, 3128336], [3129799, 3129939], [3131009, 3131183], [3147133, 3147274], [3149272, 3149425], [3149530, 3149644]]
NM_003213	[[3068477, 3068647], [3069113, 3069206], [3103903, 3104158], [3120169, 3120234], [3121335, 3121398], [3126563, 3126692], [3127710, 3127754], [3128280, 3128336], [3129799, 3129939], [3131009, 3131183], [3147133, 3147274], [3149272, 3149425], [3149530, 3149842]]	[[3103932, 3104158], [3120169, 3120234], [3121335, 3121398], [3126563, 3126692], [3127710, 3127754], [3128280, 3128336], [3129799, 3129939], [3131009, 3131183], [3147133, 3147274], [3149272, 3149425], [3149530, 3149644]]
NM_201443	[[3068747, 3069206], [3120169, 3120234], [3121335, 3121398], [3126563, 3126692], [3127710, 3127754], [3128280, 3128336], [3129799, 3129939], [3131009, 3131183], [3147133, 3147274], [3149272, 3149425], [3149530, 3149842]]	[[3126596, 3126692], [3127710, 3127754], [3128280, 3128336], [3129799, 3129939], [3131009, 3131183], [3147133, 3147274], [3149272, 3149425], [3149530, 3149644]]

Promoter

Chrom	Start	End	Description
chr12	3068196	3068232	CAGE_peak_9_at_TEAD4_5end
chr12	3068466	3068495	CAGE_peak_3_at_TEAD4_5end
chr12	3068501	3068515	CAGE_peak_4_at_TEAD4_5end
chr12	3068544	3068597	CAGE_peak_1_at_TEAD4_5end
chr12	3068634	3068656	CAGE_peak_5_at_TEAD4_5end
chr12	3068668	3068689	CAGE_peak_7_at_TEAD4_5end
chr12	3068709	3068717	CAGE_peak_14_at_TEAD4_5end
chr12	3068942	3068953	CAGE_peak_13_at_TEAD4_5end
chr12	3068957	3068978	CAGE_peak_6_at_TEAD4_5end
chr12	3068979	3068993	CAGE_peak_11_at_TEAD4_5end
chr12	3069037	3069119	CAGE_peak_2_at_TEAD4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I002980	2980889	2983744	0.66	[{'connected_gene': 'NRIP2', 'score': 10.46}, {'connected_gene': 'FOXM1', 'score': 10.07}, {'connected_gene': 'RHNO1', 'score': 10.07}, {'connected_gene': 'TULP3', 'score': 10.07}, {'connected_gene': 'ITFG2', 'score': 10.03}, {'connected_gene': 'ENSG00000250899', 'score': 7.41}, {'connected_gene': 'TEAD4', 'score': 6.99}, {'connected_gene': 'GC12P002971', 'score': 0.39}, {'connected_gene': 'GC12M003040', 'score': 0.22}]
chr12	GH12I002979	2979562	2980363	0.2	[{'connected_gene': 'NRIP2', 'score': 10.46}, {'connected_gene': 'FOXM1', 'score': 9.75}, {'connected_gene': 'RHNO1', 'score': 9.75}, {'connected_gene': 'TULP3', 'score': 9.75}, {'connected_gene': 'ITFG2', 'score': 9.17}, {'connected_gene': 'TEAD4', 'score': 6.78}, {'connected_gene': 'ENSG00000250899', 'score': 6.67}, {'connected_gene': 'GC12P002971', 'score': 0.39}, {'connected_gene': 'GC12M003040', 'score': 0.21}]
chr12	GH12I002962	2962467	2965305	1.27	[{'connected_gene': 'TULP3', 'score': 6.31}, {'connected_gene': 'RHNO1', 'score': 5.27}, {'connected_gene': 'TEAD4', 'score': 0.77}, {'connected_gene': 'GC12P002971', 'score': 0.44}]
chr12	GH12I002957	2957959	2962091	2.2	[{'connected_gene': 'TEAD4', 'score': 550.77}, {'connected_gene': 'ITFG2', 'score': 22.4}, {'connected_gene': 'DCP1B', 'score': 20.05}, {'connected_gene': 'TULP3', 'score': 7.14}, {'connected_gene': 'GC12P002971', 'score': 0.44}]
chr12	GH12I003001	3001961	3005372	0.69	[{'connected_gene': 'TEAD4', 'score': 11.53}, {'connected_gene': 'RNU6-1315P', 'score': 11.51}, {'connected_gene': 'NRIP2', 'score': 10.8}, {'connected_gene': 'ITFG2', 'score': 10.62}, {'connected_gene': 'GC12P002971', 'score': 0.29}, {'connected_gene': 'GC12M003040', 'score': 0.28}]
chr12	GH12I002990	2990299	2993855	0.31	[{'connected_gene': 'TEAD4', 'score': 12.02}, {'connected_gene': 'RNU6-1315P', 'score': 12.0}, {'connected_gene': 'NRIP2', 'score': 10.95}, {'connected_gene': 'TSPAN9', 'score': 10.41}, {'connected_gene': 'TULP3', 'score': 10.04}, {'connected_gene': 'FOXM1', 'score': 10.04}, {'connected_gene': 'RHNO1', 'score': 10.03}, {'connected_gene': 'ITFG2', 'score': 9.72}, {'connected_gene': 'GC12P002971', 'score': 0.34}, {'connected_gene': 'GC12M003040', 'score': 0.25}]
chr12	GH12I002997	2997860	3001136	1.52	[{'connected_gene': 'TEAD4', 'score': 16.18}, {'connected_gene': 'RNU6-1315P', 'score': 11.51}, {'connected_gene': 'ITFG2', 'score': 10.62}, {'connected_gene': 'GC12P002971', 'score': 0.31}, {'connected_gene': 'GC12M003040', 'score': 0.26}]
chr12	GH12I003021	3021713	3023393	0.46	[{'connected_gene': 'ITFG2', 'score': 10.06}, {'connected_gene': 'FKBP4', 'score': 9.66}, {'connected_gene': 'GC12M003040', 'score': 0.37}, {'connected_gene': 'GC12P002971', 'score': 0.23}, {'connected_gene': 'TEAD4', 'score': 0.21}]
chr12	GH12I003030	3030333	3034844	1.08	[{'connected_gene': 'TSPAN9', 'score': 11.5}, {'connected_gene': 'NRIP2', 'score': 11.34}, {'connected_gene': 'TULP3', 'score': 10.57}, {'connected_gene': 'FOXM1', 'score': 10.57}, {'connected_gene': 'RHNO1', 'score': 10.57}, {'connected_gene': 'ITFG2', 'score': 10.08}, {'connected_gene': 'FKBP4', 'score': 10.07}, {'connected_gene': 'GC12M003040', 'score': 0.44}, {'connected_gene': 'GC12P002971', 'score': 0.21}, {'connected_gene': 'TEAD4', 'score': 0.19}]
chr12	GH12I002974	2974209	2975261	0.89	[{'connected_gene': 'ENSG00000250899', 'score': 6.39}, {'connected_gene': 'TEAD4', 'score': 6.35}, {'connected_gene': 'GC12P002971', 'score': 0.44}, {'connected_gene': 'GC12M003040', 'score': 0.2}]
chr12	GH12I002976	2976715	2977004	0.74	[{'connected_gene': 'GC12P002971', 'score': 0.44}, {'connected_gene': 'TEAD4', 'score': 0.37}, {'connected_gene': 'GC12M003040', 'score': 0.21}]
chr12	GH12I003012	3012745	3015202	0.89	[{'connected_gene': 'GC12M003040', 'score': 0.31}, {'connected_gene': 'GC12P002971', 'score': 0.26}, {'connected_gene': 'TEAD4', 'score': 0.23}]
chr12	GH12I002970	2970551	2971428	0.56	[{'connected_gene': 'GC12P002971', 'score': 550.77}, {'connected_gene': 'TEAD4', 'score': 0.39}, {'connected_gene': 'GC12M003040', 'score': 0.2}]