PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000206765	[[24718319, 24718747], [24723357, 24723494], [24723869, 24724030], [24724177, 24724459], [24724569, 24724723], [24725194, 24725283], [24727490, 24727594], [24727740, 24727879], [24728280, 24728455], [24728909, 24729017], [24729145, 24729264], [24729655, 24729904], [24730900, 24731089], [24731239, 24731560], [24732294, 24732416]]	[[24718518, 24718747], [24723357, 24723494], [24723869, 24724030], [24724177, 24724459], [24724569, 24724723], [24725194, 24725283], [24727490, 24727594], [24727740, 24727879], [24728280, 24728455], [24728909, 24729017], [24729145, 24729264], [24729655, 24729904], [24730900, 24731089], [24731239, 24731558]]
ENST00000544573	[[24718413, 24718747], [24723357, 24723494], [24723869, 24724030], [24724177, 24724459], [24724569, 24724723], [24725194, 24725283], [24727490, 24727594], [24731332, 24731560], [24732294, 24732386]]	[[24718518, 24718747], [24723357, 24723494], [24723869, 24724030], [24724177, 24724459], [24724569, 24724723], [24725194, 24725283], [24727490, 24727566]]
ENST00000559669	[[24723328, 24723494], [24723869, 24724030], [24724177, 24724262]]	[[24723353, 24723494], [24723869, 24724030], [24724177, 24724262]]
ENST00000559136	[[24724659, 24724723], [24725194, 24725283], [24727490, 24727594], [24727740, 24727879], [24728280, 24728455], [24728909, 24729017], [24729145, 24729364]]	[[24724659, 24724723], [24725194, 24725283], [24727490, 24727594], [24727740, 24727879], [24728280, 24728455], [24728909, 24728966]]
ENST00000558074	[[24731003, 24731089], [24731239, 24731560], [24732294, 24732409], [24732711, 24732744]]	[[24731003, 24731089], [24731239, 24731558]]
ENST00000560443	[[24731364, 24731560], [24733139, 24733470]]	[[24731364, 24731558]]
ENST00000560478	[[24731407, 24731560], [24732294, 24732398], [24733139, 24733444]]	[[24731407, 24731558]]
ENST00000560226	[[24731432, 24731560], [24732294, 24732746]]	[[24731432, 24731558]]
ENST00000561067	[[24731530, 24731560], [24733199, 24733638]]	[[24731530, 24731558]]
NM_000359	[[24718319, 24718747], [24723357, 24723494], [24723869, 24724030], [24724177, 24724459], [24724569, 24724723], [24725194, 24725283], [24727490, 24727594], [24727740, 24727879], [24728280, 24728455], [24728909, 24729017], [24729145, 24729264], [24729655, 24729904], [24730900, 24731089], [24731239, 24731560], [24732294, 24732416]]	[[24718518, 24718747], [24723357, 24723494], [24723869, 24724030], [24724177, 24724459], [24724569, 24724723], [24725194, 24725283], [24727490, 24727594], [24727740, 24727879], [24728280, 24728455], [24728909, 24729017], [24729145, 24729264], [24729655, 24729904], [24730900, 24731089], [24731239, 24731558]]

Promoter

Chrom	Start	End	Description
chr14	24729174	24729183	CAGE_peak_17_at_TGM1_5end
chr14	24729194	24729195	CAGE_peak_32_at_TGM1_5end
chr14	24729251	24729267	CAGE_peak_9_at_TGM1_5end
chr14	24732368	24732391	CAGE_peak_1_at_TGM1_5end
chr14	24732403	24732410	CAGE_peak_4_at_TGM1_5end
chr14	24732738	24732753	CAGE_peak_3_at_TGM1_5end
chr14	24732759	24732782	CAGE_peak_5_at_TGM1_5end
chr14	24732838	24732850	CAGE_peak_8_at_TGM1_5end
chr14	24733447	24733461	CAGE_peak_6_at_TGM1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I024256	24256155	24256304	0.86	[{'connected_gene': 'TGM1', 'score': 0.44}, {'connected_gene': 'TINF2', 'score': 0.39}]
chr14	GH14I024262	24262409	24265249	1.32	[{'connected_gene': 'TGM1', 'score': 561.03}, {'connected_gene': 'DHRS1', 'score': 10.28}, {'connected_gene': 'RABGGTA', 'score': 5.06}, {'connected_gene': 'TINF2', 'score': 0.34}]
chr14	GH14I024371	24371872	24373384	0.59	[{'connected_gene': 'NYNRIN', 'score': 12.79}, {'connected_gene': 'CBLN3', 'score': 11.95}, {'connected_gene': 'KHNYN', 'score': 11.93}, {'connected_gene': 'ADCY4', 'score': 10.89}, {'connected_gene': 'TGM1', 'score': 10.15}, {'connected_gene': 'NFATC4', 'score': 0.44}]
chr14	GH14I024306	24306328	24308843	1.46	[{'connected_gene': 'LTB4R2', 'score': 550.77}, {'connected_gene': 'CIDEB', 'score': 550.77}, {'connected_gene': 'DHRS1', 'score': 20.94}, {'connected_gene': 'LTB4R', 'score': 20.69}, {'connected_gene': 'TGM1', 'score': 6.29}, {'connected_gene': 'NOP9', 'score': 0.44}]
chr14	GH14I024230	24230854	24235093	2.07	[{'connected_gene': 'GMPR2', 'score': 550.77}, {'connected_gene': 'NEDD8-MDP1', 'score': 550.77}, {'connected_gene': 'NEDD8', 'score': 550.77}, {'connected_gene': 'TM9SF1', 'score': 18.96}, {'connected_gene': 'RNA5SP383', 'score': 15.93}, {'connected_gene': 'KHNYN', 'score': 15.67}, {'connected_gene': 'LOC102724814', 'score': 12.69}, {'connected_gene': 'TINF2', 'score': 12.61}, {'connected_gene': 'RNF31', 'score': 12.61}, {'connected_gene': 'MDP1', 'score': 10.1}, {'connected_gene': 'CIDEB', 'score': 9.89}, {'connected_gene': 'HOMEZ', 'score': 9.85}, {'connected_gene': 'TGM1', 'score': 9.83}, {'connected_gene': 'DHRS4-AS1', 'score': 5.57}]
chr14	GH14I024364	24364968	24371044	2.27	[{'connected_gene': 'NFATC4', 'score': 550.77}, {'connected_gene': 'ADCY4', 'score': 20.94}, {'connected_gene': 'SDR39U1', 'score': 16.94}, {'connected_gene': 'RIPK3', 'score': 14.77}, {'connected_gene': 'NYNRIN', 'score': 12.77}, {'connected_gene': 'JPH4', 'score': 12.71}, {'connected_gene': 'CBLN3', 'score': 11.94}, {'connected_gene': 'KHNYN', 'score': 11.92}, {'connected_gene': 'TGM1', 'score': 10.16}, {'connected_gene': 'LTB4R', 'score': 9.68}, {'connected_gene': 'DHRS1', 'score': 8.94}]
chr14	GH14I024240	24240327	24244153	2.5	[{'connected_gene': 'TINF2', 'score': 567.06}, {'connected_gene': 'KHNYN', 'score': 25.59}, {'connected_gene': 'RNA5SP383', 'score': 24.32}, {'connected_gene': 'LOC102724814', 'score': 18.69}, {'connected_gene': 'NGDN', 'score': 15.08}, {'connected_gene': 'NYNRIN', 'score': 12.14}, {'connected_gene': 'RNF31', 'score': 12.06}, {'connected_gene': 'SDR39U1', 'score': 11.17}, {'connected_gene': 'ENSG00000259321', 'score': 10.22}, {'connected_gene': 'TGM1', 'score': 10.0}, {'connected_gene': 'IRF9', 'score': 6.98}, {'connected_gene': 'PSME1', 'score': 2.87}, {'connected_gene': 'RIPK3', 'score': 2.19}, {'connected_gene': 'DHRS4L1', 'score': 1.81}, {'connected_gene': 'DCAF11', 'score': 1.79}, {'connected_gene': 'CIDEB', 'score': 1.37}, {'connected_gene': 'LTB4R', 'score': 1.33}, {'connected_gene': 'NEDD8', 'score': 0.44}]
chr14	GH14I024224	24224135	24225867	0.63	[{'connected_gene': 'NOP9', 'score': 11.34}, {'connected_gene': 'DHRS1', 'score': 11.34}, {'connected_gene': 'TGM1', 'score': 10.82}, {'connected_gene': 'REC8', 'score': 10.51}, {'connected_gene': 'MDP1', 'score': 10.14}, {'connected_gene': 'TM9SF1', 'score': 5.88}, {'connected_gene': 'NEDD8', 'score': 0.44}, {'connected_gene': 'NEDD8-MDP1', 'score': 0.44}]
chr14	GH14I024246	24246418	24248071	1.06	[{'connected_gene': 'CHMP4A', 'score': 16.3}, {'connected_gene': 'RABGGTA', 'score': 12.12}, {'connected_gene': 'NOP9', 'score': 11.73}, {'connected_gene': 'DHRS1', 'score': 11.73}, {'connected_gene': 'ENSG00000254692', 'score': 11.26}, {'connected_gene': 'MDP1', 'score': 11.26}, {'connected_gene': 'TM9SF1', 'score': 11.2}, {'connected_gene': 'IPO4', 'score': 10.43}, {'connected_gene': 'ADCY4', 'score': 10.0}, {'connected_gene': 'TSSK4', 'score': 9.82}, {'connected_gene': 'RNF31', 'score': 5.64}, {'connected_gene': 'TINF2', 'score': 0.77}, {'connected_gene': 'TGM1', 'score': 0.37}]
chr14	GH14I024309	24309415	24318044	2.22	[{'connected_gene': 'LTB4R', 'score': 572.59}, {'connected_gene': 'CIDEB', 'score': 563.63}, {'connected_gene': 'LTB4R2', 'score': 550.44}, {'connected_gene': 'KHNYN', 'score': 40.62}, {'connected_gene': 'NGDN', 'score': 28.41}, {'connected_gene': 'NYNRIN', 'score': 24.91}, {'connected_gene': 'RNA5SP383', 'score': 15.89}, {'connected_gene': 'NFATC4', 'score': 14.57}, {'connected_gene': 'TM9SF1', 'score': 14.46}, {'connected_gene': 'SDR39U1', 'score': 14.42}, {'connected_gene': 'RNF31', 'score': 14.1}, {'connected_gene': 'DHRS1', 'score': 13.53}, {'connected_gene': 'TINF2', 'score': 13.34}, {'connected_gene': 'LOC102724814', 'score': 12.95}, {'connected_gene': 'PABPN1', 'score': 11.52}, {'connected_gene': 'NEDD8-MDP1', 'score': 10.9}, {'connected_gene': 'NEDD8', 'score': 10.9}, {'connected_gene': 'CBLN3', 'score': 10.84}, {'connected_gene': 'ENSG00000259321', 'score': 10.15}, {'connected_gene': 'TGM1', 'score': 6.32}, {'connected_gene': 'GC14M024319', 'score': 0.44}]
chr14	GH14I024258	24258938	24260569	0.66	[{'connected_gene': 'DHRS1', 'score': 12.39}, {'connected_gene': 'TGM1', 'score': 12.28}, {'connected_gene': 'TINF2', 'score': 0.37}]
chr14	GH14I024251	24251494	24252622	1.03	[{'connected_gene': 'DHRS1', 'score': 6.08}, {'connected_gene': 'TINF2', 'score': 0.44}, {'connected_gene': 'TGM1', 'score': 0.39}]
chr14	GH14I024295	24295989	24298364	1.16	[{'connected_gene': 'DHRS1', 'score': 14.44}, {'connected_gene': 'ENSG00000259321', 'score': 10.83}, {'connected_gene': 'RNA5SP383', 'score': 10.06}, {'connected_gene': 'TGM1', 'score': 6.31}, {'connected_gene': 'PIR40275', 'score': 0.37}, {'connected_gene': 'LOC102725044', 'score': 0.31}]
chr14	GH14I024194	24194150	24197603	2.09	[{'connected_gene': 'TM9SF1', 'score': 566.24}, {'connected_gene': 'PIR45873', 'score': 550.77}, {'connected_gene': 'RNF31', 'score': 32.57}, {'connected_gene': 'TINF2', 'score': 25.35}, {'connected_gene': 'MDP1', 'score': 22.41}, {'connected_gene': 'SLC22A17', 'score': 21.61}, {'connected_gene': 'PSME2', 'score': 20.64}, {'connected_gene': 'KHNYN', 'score': 17.19}, {'connected_gene': 'RNA5SP383', 'score': 14.59}, {'connected_gene': 'JPH4', 'score': 12.72}, {'connected_gene': 'LOC102724814', 'score': 12.4}, {'connected_gene': 'CIDEB', 'score': 12.29}, {'connected_gene': 'SDR39U1', 'score': 11.85}, {'connected_gene': 'REC8', 'score': 11.71}, {'connected_gene': 'NEDD8-MDP1', 'score': 11.47}, {'connected_gene': 'NEDD8', 'score': 11.47}, {'connected_gene': 'PABPN1', 'score': 10.8}, {'connected_gene': 'IPO4', 'score': 10.57}, {'connected_gene': 'ENSG00000259321', 'score': 10.47}, {'connected_gene': 'TGM1', 'score': 10.3}, {'connected_gene': 'NFATC4', 'score': 10.14}, {'connected_gene': 'BCL2L2', 'score': 9.99}, {'connected_gene': 'EFS', 'score': 9.91}, {'connected_gene': 'TSSK4', 'score': 5.62}, {'connected_gene': 'DHRS4', 'score': 4.29}, {'connected_gene': 'ENSG00000276698', 'score': 0.77}, {'connected_gene': 'ENSG00000254692', 'score': 0.37}]
chr14	GH14I024198	24198483	24199537	0.54	[{'connected_gene': 'ENSG00000276698', 'score': 550.77}, {'connected_gene': 'TGM1', 'score': 10.19}, {'connected_gene': 'CHMP4A', 'score': 6.83}, {'connected_gene': 'TSSK4', 'score': 6.18}, {'connected_gene': 'DHRS4-AS1', 'score': 4.74}, {'connected_gene': 'NFATC4', 'score': 4.47}, {'connected_gene': 'ENSG00000278784', 'score': 0.77}, {'connected_gene': 'ENSG00000254692', 'score': 0.39}]