PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000337554	[[43547519, 43547610], [43555215, 43555426], [43557057, 43557196], [43558808, 43559248]]	[[43555244, 43555426], [43557057, 43557196], [43558808, 43558997]]
ENST00000396265	[[43547534, 43547610], [43557057, 43557196], [43558808, 43559247]]	[[43557156, 43557196], [43558808, 43559077]]
ENST00000583777	[[43547552, 43547610], [43557057, 43557196], [43558808, 43559247]]	[[43557187, 43557196], [43558808, 43558997]]
ENST00000472378	[[43547578, 43547610], [43555215, 43555678]]	None
ENST00000428336	[[43547904, 43548226], [43555215, 43555426], [43557057, 43557196]]	[[43555244, 43555426], [43557057, 43557196]]
ENST00000329563	[[43547936, 43548133], [43555215, 43555426], [43557057, 43557196], [43558808, 43559216]]	[[43555244, 43555426], [43557057, 43557196], [43558808, 43558997]]
NR_046308	[[43547519, 43547610], [43557057, 43557196], [43558808, 43559248]]	None
NM_000714	[[43547519, 43547610], [43555215, 43555426], [43557057, 43557196], [43558808, 43559248]]	[[43555244, 43555426], [43557057, 43557196], [43558808, 43558997]]
NM_001256531	[[43547938, 43548133], [43555215, 43555426], [43557057, 43557196], [43558808, 43559248]]	[[43555244, 43555426], [43557057, 43557196], [43558808, 43558997]]
NM_001256530	[[43547940, 43548226], [43555215, 43555426], [43557057, 43557196], [43558808, 43559248]]	[[43555244, 43555426], [43557057, 43557196], [43558808, 43558997]]

Promoter

Chrom	Start	End	Description
chr22	43547533	43547590	CAGE_peak_1_at_TSPO_5end
chr22	43547877	43547911	CAGE_peak_2_at_TSPO_5end
chr22	43547942	43547955	CAGE_peak_4_at_TSPO_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr22	GH22I043163	43163094	43164540	0.89	[{'connected_gene': 'TSPO', 'score': 21.21}, {'connected_gene': 'MCAT', 'score': 13.21}, {'connected_gene': 'TTLL12', 'score': 0.34}]
chr22	GH22I043168	43168204	43169169	0.4	[{'connected_gene': 'TSPO', 'score': 13.15}, {'connected_gene': 'MCAT', 'score': 12.5}, {'connected_gene': 'TTLL12', 'score': 0.37}]
chr22	GH22I043154	43154921	43156457	1.08	[{'connected_gene': 'TSPO', 'score': 34.41}, {'connected_gene': 'ARFGAP3', 'score': 12.3}, {'connected_gene': 'PACSIN2', 'score': 1.23}, {'connected_gene': 'TTLL12', 'score': 0.29}]
chr22	GH22I043145	43145075	43149223	1.09	[{'connected_gene': 'TSPO', 'score': 21.6}, {'connected_gene': 'TTLL12', 'score': 4.99}, {'connected_gene': 'MCAT', 'score': 0.77}]
chr22	GH22I043159	43159375	43160680	0.79	[{'connected_gene': 'TSPO', 'score': 17.76}, {'connected_gene': 'TTLL12', 'score': 0.31}]
chr22	GH22I043171	43171104	43172173	0.51	[{'connected_gene': 'TSPO', 'score': 12.86}, {'connected_gene': 'TTLL12', 'score': 0.37}]
chr22	GH22I043173	43173471	43176669	0.38	[{'connected_gene': 'TSPO', 'score': 17.9}, {'connected_gene': 'TTLL12', 'score': 13.61}]
chr22	GH22I043160	43159135	43159194	0.7	[{'connected_gene': 'TSPO', 'score': 559.34}, {'connected_gene': 'TTLL12', 'score': 0.31}]
chr22	GH22I043150	43150780	43154156	2.04	[{'connected_gene': 'TSPO', 'score': 585.01}, {'connected_gene': 'TTLL12', 'score': 0.29}]
chr22	GH22I043156	43156615	43157615	0.52	[{'connected_gene': 'TSPO', 'score': 7.24}, {'connected_gene': 'TTLL12', 'score': 0.29}]
chr22	GH22I043121	43121113	43124663	0.49	[{'connected_gene': 'BIK', 'score': 9.15}, {'connected_gene': 'MCAT', 'score': 8.62}, {'connected_gene': 'TTLL12', 'score': 7.82}, {'connected_gene': 'TSPO', 'score': 7.5}]
chr22	GH22I042685	42685565	42690470	1.55	[{'connected_gene': 'A4GALT', 'score': 14.11}, {'connected_gene': 'CYB5R3', 'score': 11.97}, {'connected_gene': 'SERHL2', 'score': 7.2}, {'connected_gene': 'TSPO', 'score': 6.13}, {'connected_gene': 'MCAT', 'score': 1.59}, {'connected_gene': 'GC22M042670', 'score': 0.37}]
chr22	GH22I042424	42424239	42428760	0.68	[{'connected_gene': 'NDUFA6', 'score': 17.19}, {'connected_gene': 'PHF5A', 'score': 12.7}, {'connected_gene': 'XRCC6', 'score': 11.06}, {'connected_gene': 'RN7SKP80', 'score': 10.78}, {'connected_gene': 'RPL5P34', 'score': 10.28}, {'connected_gene': 'SERHL', 'score': 6.11}, {'connected_gene': 'SEPT3', 'score': 5.5}, {'connected_gene': 'NDUFA6-AS1', 'score': 4.95}, {'connected_gene': 'TSPO', 'score': 4.46}, {'connected_gene': 'ENSG00000273424', 'score': 4.33}, {'connected_gene': 'CYP2D6', 'score': 4.05}, {'connected_gene': 'GC22P042420', 'score': 0.44}, {'connected_gene': 'NFAM1', 'score': 0.39}]
chr22	GH22I043105	43105415	43105550	0.2	[{'connected_gene': 'MCAT', 'score': 12.06}, {'connected_gene': 'TSPO', 'score': 11.45}, {'connected_gene': 'ARFGAP3', 'score': 9.51}, {'connected_gene': 'GC22M043099', 'score': 0.44}, {'connected_gene': 'BIK', 'score': 0.44}]
chr22	GH22I043103	43103644	43105239	1.6	[{'connected_gene': 'MCAT', 'score': 12.06}, {'connected_gene': 'TSPO', 'score': 11.89}, {'connected_gene': 'CYB5R3', 'score': 10.74}, {'connected_gene': 'ARFGAP3', 'score': 9.77}, {'connected_gene': 'BIK', 'score': 8.9}, {'connected_gene': 'CYP2D7', 'score': 4.92}, {'connected_gene': 'GC22M043099', 'score': 0.44}]
chr22	GH22I043142	43142400	43144229	2.23	[{'connected_gene': 'MCAT', 'score': 557.22}, {'connected_gene': 'LOC100506679', 'score': 11.91}, {'connected_gene': 'RRP7BP', 'score': 11.06}, {'connected_gene': 'TTLL1', 'score': 10.65}, {'connected_gene': 'BIK', 'score': 9.13}, {'connected_gene': 'TSPO', 'score': 7.85}, {'connected_gene': 'TTLL12', 'score': 4.83}]
chr22	GH22I043185	43185496	43188519	2.26	[{'connected_gene': 'TTLL12', 'score': 583.38}, {'connected_gene': 'TSPO', 'score': 0.28}]
chr22	GH22I043182	43182567	43185080	1.31	[{'connected_gene': 'TTLL12', 'score': 27.03}, {'connected_gene': 'LOC105373051', 'score': 12.04}, {'connected_gene': 'MCAT', 'score': 11.96}, {'connected_gene': 'TSPO', 'score': 0.29}]
chr22	GH22I043099	43099855	43102478	0.85	[{'connected_gene': 'GC22M043099', 'score': 550.77}, {'connected_gene': 'TTLL1', 'score': 17.91}, {'connected_gene': 'LOC100506679', 'score': 13.06}, {'connected_gene': 'TSPO', 'score': 11.88}, {'connected_gene': 'MCAT', 'score': 11.7}, {'connected_gene': 'CYB5R3', 'score': 10.74}, {'connected_gene': 'ARFGAP3', 'score': 10.34}, {'connected_gene': 'BIK', 'score': 8.15}]