PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000284240	[[119288089, 119290230], [119290760, 119291096], [119291578, 119291639], [119293822, 119294838]]	[[119290117, 119290230], [119290760, 119291096], [119291578, 119291615]]
ENST00000584021	[[119289529, 119291956]]	None
ENST00000528522	[[119289529, 119290230], [119290760, 119291096], [119291578, 119291639], [119292320, 119293272]]	[[119290117, 119290230], [119290760, 119291096], [119291578, 119291615]]
ENST00000528295	[[119289782, 119290230], [119290760, 119291088], [119291578, 119291639], [119293822, 119293882]]	[[119291011, 119291088], [119291578, 119291615]]
ENST00000524970	[[119290017, 119290141], [119290760, 119291096], [119291578, 119291639], [119293822, 119293882]]	[[119290017, 119290141], [119290760, 119291096], [119291578, 119291615]]
ENST00000527590	[[119290017, 119290230], [119290760, 119291096], [119293822, 119293882]]	None
ENST00000580275	[[119290084, 119290230], [119290760, 119291045], [119291578, 119291639], [119293822, 119293908]]	[[119290117, 119290230], [119290760, 119291045], [119291578, 119291615]]
ENST00000524659	[[119290145, 119290230], [119290760, 119291096], [119291578, 119291639], [119295607, 119295695]]	[[119290145, 119290230], [119290760, 119291096], [119291578, 119291615]]
ENST00000532974	[[119290174, 119290230], [119290760, 119291158], [119291578, 119291639], [119293822, 119293909]]	None
ENST00000533840	[[119291118, 119291639], [119293822, 119293911]]	None
NM_001311160	[[119288650, 119290230], [119290760, 119291096], [119291578, 119291639], [119292320, 119293272]]	[[119290117, 119290230], [119290760, 119291096], [119291578, 119291615]]
NM_006288	[[119288650, 119290230], [119290760, 119291096], [119291578, 119291639], [119293822, 119294838]]	[[119290117, 119290230], [119290760, 119291096], [119291578, 119291615]]
NM_001311162	[[119288650, 119290230], [119290760, 119291096], [119291578, 119291639], [119295607, 119295695]]	[[119290117, 119290230], [119290760, 119291096], [119291578, 119291615]]

Promoter

Chrom	Start	End	Description
chr11	119288974	119289019	CAGE_peak_6_at_THY1_5end
chr11	119289293	119289305	CAGE_peak_12_at_THY1_5end
chr11	119289379	119289398	CAGE_peak_7_at_THY1_5end
chr11	119289504	119289517	CAGE_peak_5_at_THY1_5end
chr11	119289671	119289701	CAGE_peak_10_at_THY1_5end
chr11	119289738	119289754	CAGE_peak_9_at_THY1_5end
chr11	119291603	119291653	CAGE_peak_4_at_THY1_5end
chr11	119293872	119293897	CAGE_peak_1_at_THY1_5end
chr11	119293903	119293917	CAGE_peak_2_at_THY1_5end
chr11	119294225	119294282	CAGE_peak_3_at_THY1_5end
chr11	119294624	119294630	CAGE_peak_13_at_THY1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I119360	119360106	119365873	2.16	[{'connected_gene': 'USP2', 'score': 558.95}, {'connected_gene': 'RNF26', 'score': 17.37}, {'connected_gene': 'ENSG00000245385', 'score': 12.54}, {'connected_gene': 'THY1', 'score': 10.72}, {'connected_gene': 'ABCG4', 'score': 10.39}, {'connected_gene': 'NLRX1', 'score': 10.36}, {'connected_gene': 'LOC101929089', 'score': 10.06}, {'connected_gene': 'GC11M119369', 'score': 0.44}, {'connected_gene': 'C1QTNF5', 'score': 0.37}, {'connected_gene': 'MFRP', 'score': 0.37}]
chr11	GH11I119374	119374251	119379776	1.89	[{'connected_gene': 'USP2', 'score': 561.6}, {'connected_gene': 'THY1', 'score': 21.97}, {'connected_gene': 'MFRP', 'score': 11.8}, {'connected_gene': 'C1QTNF5', 'score': 11.8}, {'connected_gene': 'ENSG00000254740', 'score': 0.77}]
chr11	GH11I119352	119352471	119353664	1.18	[{'connected_gene': 'USP2', 'score': 20.15}, {'connected_gene': 'IFT46', 'score': 14.64}, {'connected_gene': 'KMT2A', 'score': 13.16}, {'connected_gene': 'VPS11', 'score': 12.28}, {'connected_gene': 'RPL5P30', 'score': 12.27}, {'connected_gene': 'USP2-AS1', 'score': 12.2}, {'connected_gene': 'ENSG00000255121', 'score': 11.11}, {'connected_gene': 'THY1', 'score': 10.7}, {'connected_gene': 'NLRX1', 'score': 10.36}, {'connected_gene': 'C1QTNF5', 'score': 0.44}, {'connected_gene': 'MFRP', 'score': 0.44}, {'connected_gene': 'GC11M119369', 'score': 0.37}]
chr11	GH11I119356	119356201	119357615	1.23	[{'connected_gene': 'USP2', 'score': 18.28}, {'connected_gene': 'USP2-AS1', 'score': 12.23}, {'connected_gene': 'THY1', 'score': 10.71}, {'connected_gene': 'NLRX1', 'score': 10.36}, {'connected_gene': 'MFRP', 'score': 0.39}, {'connected_gene': 'C1QTNF5', 'score': 0.39}, {'connected_gene': 'GC11M119369', 'score': 0.39}]
chr11	GH11I119380	119380176	119382540	2.25	[{'connected_gene': 'USP2', 'score': 559.66}, {'connected_gene': 'USP2-AS1', 'score': 550.77}, {'connected_gene': 'THY1', 'score': 11.29}, {'connected_gene': 'ENSG00000254740', 'score': 0.44}]
chr11	GH11I119481	119481001	119482092	1.17	[{'connected_gene': 'MFRP', 'score': 11.21}, {'connected_gene': 'C1QTNF5', 'score': 11.21}, {'connected_gene': 'THY1', 'score': 9.83}, {'connected_gene': 'GC11P119503', 'score': 0.34}, {'connected_gene': 'GC11P119452', 'score': 0.31}, {'connected_gene': 'USP2-AS1', 'score': 0.15}]
chr11	GH11I119423	119423869	119425681	0.63	[{'connected_gene': 'THY1', 'score': 570.02}, {'connected_gene': 'USP2', 'score': 17.96}, {'connected_gene': 'USP2-AS1', 'score': 11.91}, {'connected_gene': 'ENSG00000254740', 'score': 11.88}, {'connected_gene': 'HINFP', 'score': 10.92}, {'connected_gene': 'C1QTNF5', 'score': 10.56}, {'connected_gene': 'MFRP', 'score': 10.56}, {'connected_gene': 'ENSG00000263873', 'score': 0.44}]
chr11	GH11I119469	119469778	119471750	1.05	[{'connected_gene': 'THY1', 'score': 23.56}, {'connected_gene': 'USP2', 'score': 17.69}, {'connected_gene': 'USP2-AS1', 'score': 12.11}, {'connected_gene': 'ENSG00000254740', 'score': 12.09}, {'connected_gene': 'C1QTNF5', 'score': 11.29}, {'connected_gene': 'MFRP', 'score': 11.29}, {'connected_gene': 'LOC105369520', 'score': 10.73}, {'connected_gene': 'GC11P119452', 'score': 0.37}, {'connected_gene': 'GC11P119503', 'score': 0.29}]
chr11	GH11I119459	119459295	119462169	0.94	[{'connected_gene': 'THY1', 'score': 35.35}, {'connected_gene': 'USP2', 'score': 18.89}, {'connected_gene': 'USP2-AS1', 'score': 12.12}, {'connected_gene': 'ENSG00000254740', 'score': 12.11}, {'connected_gene': 'C1QTNF5', 'score': 11.3}, {'connected_gene': 'MFRP', 'score': 11.3}, {'connected_gene': 'GC11P119452', 'score': 0.44}, {'connected_gene': 'GC11P119503', 'score': 0.26}]
chr11	GH11I119432	119432008	119433969	0.94	[{'connected_gene': 'THY1', 'score': 19.22}, {'connected_gene': 'USP2', 'score': 6.28}, {'connected_gene': 'GC11M119445', 'score': 0.39}, {'connected_gene': 'USP2-AS1', 'score': 0.23}]
chr11	GH11I119474	119474602	119475968	1.01	[{'connected_gene': 'THY1', 'score': 23.37}, {'connected_gene': 'MFRP', 'score': 10.91}, {'connected_gene': 'C1QTNF5', 'score': 10.91}, {'connected_gene': 'LOC105369520', 'score': 10.04}, {'connected_gene': 'GC11P119452', 'score': 0.34}, {'connected_gene': 'GC11P119503', 'score': 0.31}, {'connected_gene': 'USP2-AS1', 'score': 0.16}]
chr11	GH11I119472	119472330	119472479	0.69	[{'connected_gene': 'THY1', 'score': 11.46}, {'connected_gene': 'MFRP', 'score': 10.91}, {'connected_gene': 'C1QTNF5', 'score': 10.91}, {'connected_gene': 'LOC105369520', 'score': 10.04}, {'connected_gene': 'GC11P119452', 'score': 0.37}, {'connected_gene': 'GC11P119503', 'score': 0.29}, {'connected_gene': 'USP2-AS1', 'score': 0.16}]
chr11	GH11I119421	119421511	119423827	1.83	[{'connected_gene': 'THY1', 'score': 575.96}, {'connected_gene': 'HINFP', 'score': 10.92}, {'connected_gene': 'ENSG00000263873', 'score': 0.77}, {'connected_gene': 'USP2-AS1', 'score': 0.26}]
chr11	GH11I119366	119366354	119372784	1.63	[{'connected_gene': 'THY1', 'score': 21.83}, {'connected_gene': 'C1QTNF5', 'score': 13.53}, {'connected_gene': 'ABCG4', 'score': 12.67}, {'connected_gene': 'MFRP', 'score': 12.31}, {'connected_gene': 'USP2', 'score': 10.41}, {'connected_gene': 'NLRX1', 'score': 10.12}, {'connected_gene': 'H2AFX', 'score': 5.28}, {'connected_gene': 'ENSG00000254740', 'score': 0.77}, {'connected_gene': 'GC11M119369', 'score': 0.77}]
chr11	GH11I119425	119425955	119426138	0.38	[{'connected_gene': 'THY1', 'score': 550.77}, {'connected_gene': 'USP2-AS1', 'score': 11.91}, {'connected_gene': 'USP2', 'score': 11.91}, {'connected_gene': 'ENSG00000254740', 'score': 11.88}, {'connected_gene': 'MFRP', 'score': 10.56}, {'connected_gene': 'C1QTNF5', 'score': 10.56}, {'connected_gene': 'GC11M119445', 'score': 0.37}]
chr11	GH11I119426	119426250	119426940	0.38	[{'connected_gene': 'THY1', 'score': 569.97}, {'connected_gene': 'USP2-AS1', 'score': 11.91}, {'connected_gene': 'USP2', 'score': 11.91}, {'connected_gene': 'ENSG00000254740', 'score': 11.88}, {'connected_gene': 'MFRP', 'score': 10.56}, {'connected_gene': 'C1QTNF5', 'score': 10.56}, {'connected_gene': 'GC11M119445', 'score': 0.37}]
chr11	GH11I119441	119441951	119442100	0.73	[{'connected_gene': 'THY1', 'score': 19.1}, {'connected_gene': 'GC11M119445', 'score': 0.77}, {'connected_gene': 'USP2-AS1', 'score': 0.21}]
chr11	GH11I119420	119420801	119421200	0.51	[{'connected_gene': 'THY1', 'score': 6.72}, {'connected_gene': 'ENSG00000263873', 'score': 0.77}, {'connected_gene': 'USP2-AS1', 'score': 0.28}]
chr11	GH11I119444	119444675	119448283	0.89	[{'connected_gene': 'DUXAP5', 'score': 550.77}, {'connected_gene': 'GC11M119445', 'score': 550.77}, {'connected_gene': 'THY1', 'score': 24.6}, {'connected_gene': 'USP2', 'score': 6.23}, {'connected_gene': 'GC11P119452', 'score': 0.44}, {'connected_gene': 'USP2-AS1', 'score': 0.21}]
chr11	GH11I118433	118433976	118442200	2.7	[{'connected_gene': 'KMT2A', 'score': 561.41}, {'connected_gene': 'VPS11', 'score': 31.7}, {'connected_gene': 'TMEM25', 'score': 23.66}, {'connected_gene': 'IFT46', 'score': 19.63}, {'connected_gene': 'ARCN1', 'score': 19.21}, {'connected_gene': 'HINFP', 'score': 19.15}, {'connected_gene': 'THY1', 'score': 12.58}, {'connected_gene': 'CCDC84', 'score': 10.81}, {'connected_gene': 'LOC101929089', 'score': 10.61}, {'connected_gene': 'ENSG00000254873', 'score': 10.6}, {'connected_gene': 'ATP5MG', 'score': 10.6}, {'connected_gene': 'FXYD6', 'score': 10.18}, {'connected_gene': 'DSCAML1', 'score': 9.93}, {'connected_gene': 'CCDC153', 'score': 5.08}, {'connected_gene': 'ENSG00000255384', 'score': 0.77}, {'connected_gene': 'GC11M118474', 'score': 0.28}]
chr11	GH11I120328	120328450	120342594	2.54	[{'connected_gene': 'ARHGEF12', 'score': 555.55}, {'connected_gene': 'TMEM136', 'score': 25.31}, {'connected_gene': 'THY1', 'score': 12.58}]
chr11	GH11I120347	120346816	120347898	1.19	[{'connected_gene': 'TMEM136', 'score': 74.15}, {'connected_gene': 'TBCEL', 'score': 63.18}, {'connected_gene': 'TECTA', 'score': 16.14}, {'connected_gene': 'THY1', 'score': 12.58}, {'connected_gene': 'ARHGEF12', 'score': 0.39}, {'connected_gene': 'PIR31602', 'score': 0.37}]
chr11	GH11I119416	119416742	119420155	0.92	[{'connected_gene': 'ENSG00000263873', 'score': 550.77}, {'connected_gene': 'THY1', 'score': 25.63}, {'connected_gene': 'USP2-AS1', 'score': 0.28}]
chr11	GH11I119502	119502110	119502259	0.31	[{'connected_gene': 'GC11P119503', 'score': 550.77}, {'connected_gene': 'LOC105369520', 'score': 10.54}, {'connected_gene': 'THY1', 'score': 10.43}, {'connected_gene': 'GC11P119452', 'score': 0.25}, {'connected_gene': 'USP2-AS1', 'score': 0.13}]