PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000366592	[[236305831, 236306336], [236332005, 236332055], [236341713, 236341936], [236343178, 236343328], [236347077, 236347206], [236368425, 236368550], [236371349, 236372206]]	[[236305922, 236306336], [236332005, 236332055], [236341713, 236341936], [236343178, 236343328], [236347077, 236347206], [236368425, 236368550], [236371349, 236371458]]
ENST00000366591	[[236305843, 236306336], [236343178, 236343488]]	[[236305922, 236306336], [236343178, 236343466]]
ENST00000419162	[[236306067, 236306336], [236341713, 236341936], [236343178, 236343328], [236347077, 236347206], [236368425, 236368498]]	[[236341903, 236341936], [236343178, 236343328], [236347077, 236347206], [236368425, 236368498]]
ENST00000454895	[[236332000, 236332055], [236341713, 236341936], [236343178, 236343328], [236347077, 236347206], [236368425, 236368550], [236371360, 236371782]]	[[236332000, 236332055], [236341713, 236341936], [236343178, 236343328], [236347077, 236347206], [236368425, 236368550], [236371360, 236371370]]
ENST00000477559	[[236347077, 236347206], [236368425, 236368550], [236385090, 236385165]]	None
NM_003272	[[236305831, 236306336], [236332005, 236332055], [236341713, 236341936], [236343178, 236343328], [236347077, 236347206], [236368425, 236368550], [236371349, 236372209]]	[[236305922, 236306336], [236332005, 236332055], [236341713, 236341936], [236343178, 236343328], [236347077, 236347206], [236368425, 236368550], [236371349, 236371458]]

Promoter

Chrom	Start	End	Description
chr1	236305796	236305810	CAGE_peak_2_at_GPR137B_5end
chr1	236305826	236305877	CAGE_peak_1_at_GPR137B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I236141	236141114	236144055	1.94	[{'connected_gene': 'GPR137B', 'score': 561.57}, {'connected_gene': 'ENSG00000230325', 'score': 15.8}, {'connected_gene': 'ENSG00000273058', 'score': 15.41}, {'connected_gene': 'HEATR1', 'score': 13.41}, {'connected_gene': 'RPS21P1', 'score': 13.1}, {'connected_gene': 'ARID4B', 'score': 12.35}, {'connected_gene': 'MTR', 'score': 11.28}, {'connected_gene': 'LDHAP2', 'score': 10.04}, {'connected_gene': 'TBCE', 'score': 9.79}, {'connected_gene': 'GC01P236268', 'score': 0.13}]
chr1	GH01I236156	236156113	236157348	1.09	[{'connected_gene': 'GPR137B', 'score': 20.86}, {'connected_gene': 'LGALS8', 'score': 1.67}, {'connected_gene': 'LYST', 'score': 1.24}, {'connected_gene': 'GC01P236268', 'score': 0.14}]
chr1	GH01I236159	236159141	236161099	1.29	[{'connected_gene': 'GPR137B', 'score': 14.85}, {'connected_gene': 'LGALS8', 'score': 1.64}, {'connected_gene': 'LYST', 'score': 1.35}, {'connected_gene': 'GC01P236268', 'score': 0.14}]
chr1	GH01I236120	236120401	236121336	0.88	[{'connected_gene': 'GPR137B', 'score': 11.65}, {'connected_gene': 'LGALS8', 'score': 10.31}, {'connected_gene': 'LGALS8-AS1', 'score': 9.98}, {'connected_gene': 'GC01M236115', 'score': 0.77}, {'connected_gene': 'LOC343508', 'score': 0.39}]
chr1	GH01I236496	236496080	236497241	0.56	[{'connected_gene': 'GPR137B', 'score': 16.09}, {'connected_gene': 'LGALS8', 'score': 12.42}, {'connected_gene': 'LGALS8-AS1', 'score': 12.1}, {'connected_gene': 'GC01P236501', 'score': 0.44}, {'connected_gene': 'ENO1P1', 'score': 0.39}]
chr1	GH01I236168	236168861	236169200	1.08	[{'connected_gene': 'GPR137B', 'score': 0.31}, {'connected_gene': 'GC01P236268', 'score': 0.15}]
chr1	GH01I236147	236147681	236147830	0.46	[{'connected_gene': 'GPR137B', 'score': 0.44}, {'connected_gene': 'GC01P236268', 'score': 0.13}]
chr1	GH01I236169	236169241	236169323	0.65	[{'connected_gene': 'GPR137B', 'score': 0.31}, {'connected_gene': 'GC01P236268', 'score': 0.15}]
chr1	GH01I236149	236147941	236148090	0.49	[{'connected_gene': 'GPR137B', 'score': 0.44}, {'connected_gene': 'GC01P236268', 'score': 0.13}]
chr1	GH01I236144	236144841	236144990	0.54	[{'connected_gene': 'GPR137B', 'score': 0.77}, {'connected_gene': 'GC01P236268', 'score': 0.13}]
chr1	GH01I236145	236144561	236144710	0.46	[{'connected_gene': 'GPR137B', 'score': 0.77}, {'connected_gene': 'GC01P236268', 'score': 0.13}]
chr1	GH01I236251	236251306	236251389	0.24	[{'connected_gene': 'ERO1B', 'score': 11.56}, {'connected_gene': 'GPR137B', 'score': 2.09}, {'connected_gene': 'GC01P236268', 'score': 0.37}]
chr1	GH01I236148	236148525	236149974	0.74	[{'connected_gene': 'ARID4B', 'score': 24.0}, {'connected_gene': 'ENSG00000273058', 'score': 22.4}, {'connected_gene': 'GGPS1', 'score': 22.29}, {'connected_gene': 'MTR', 'score': 14.69}, {'connected_gene': 'GPR137B', 'score': 12.87}, {'connected_gene': 'TBCE', 'score': 12.6}, {'connected_gene': 'ENSG00000230325', 'score': 12.24}, {'connected_gene': 'RPS21P1', 'score': 10.57}, {'connected_gene': 'HEATR1', 'score': 10.14}, {'connected_gene': 'GC01P236268', 'score': 0.13}]
chr1	GH01I236162	236162967	236164171	0.86	[{'connected_gene': 'ARID4B', 'score': 63.91}, {'connected_gene': 'ENSG00000273058', 'score': 63.64}, {'connected_gene': 'HEATR1', 'score': 57.82}, {'connected_gene': 'ENSG00000230325', 'score': 50.65}, {'connected_gene': 'RPS21P1', 'score': 47.65}, {'connected_gene': 'MTR', 'score': 31.36}, {'connected_gene': 'GPR137B', 'score': 19.15}, {'connected_gene': 'RPL35P1', 'score': 10.32}, {'connected_gene': 'GC01P236268', 'score': 0.15}]
chr1	GH01I236062	236062800	236069062	2.79	[{'connected_gene': 'NID1', 'score': 555.45}, {'connected_gene': 'GC01P236064', 'score': 550.77}, {'connected_gene': 'ARID4B', 'score': 66.39}, {'connected_gene': 'ENSG00000273058', 'score': 43.03}, {'connected_gene': 'GGPS1', 'score': 32.23}, {'connected_gene': 'ENSG00000230325', 'score': 27.24}, {'connected_gene': 'HEATR1', 'score': 25.01}, {'connected_gene': 'RPS21P1', 'score': 23.66}, {'connected_gene': 'MTR', 'score': 19.29}, {'connected_gene': 'LYST', 'score': 2.71}, {'connected_gene': 'LGALS8', 'score': 2.56}, {'connected_gene': 'GPR137B', 'score': 2.15}, {'connected_gene': 'LOC343508', 'score': 0.26}]
chr1	GH01I236470	236470811	236472535	0.9	[{'connected_gene': 'LGALS8', 'score': 11.38}, {'connected_gene': 'LGALS8-AS1', 'score': 11.0}, {'connected_gene': 'ENSG00000273058', 'score': 10.89}, {'connected_gene': 'ENSG00000230325', 'score': 10.37}, {'connected_gene': 'GPR137B', 'score': 10.25}, {'connected_gene': 'ERO1B', 'score': 10.24}, {'connected_gene': 'GC01P236477', 'score': 0.44}, {'connected_gene': 'EDARADD', 'score': 0.13}]
chr1	GH01I236415	236415142	236417862	0.88	[{'connected_gene': 'EDARADD', 'score': 27.07}, {'connected_gene': 'LGALS8', 'score': 12.99}, {'connected_gene': 'LGALS8-AS1', 'score': 10.28}, {'connected_gene': 'GPR137B', 'score': 9.81}, {'connected_gene': 'MTR', 'score': 6.31}, {'connected_gene': 'GC01P236477', 'score': 0.21}]
chr1	GH01I235859	235859382	235859518	0.5	[{'connected_gene': 'LYST', 'score': 20.01}, {'connected_gene': 'GPR137B', 'score': 1.44}, {'connected_gene': 'RNU5E-2P', 'score': 0.77}, {'connected_gene': 'MIR1537', 'score': 0.44}]
chr1	GH01I235858	235858602	235859376	1.24	[{'connected_gene': 'LYST', 'score': 12.3}, {'connected_gene': 'GPR137B', 'score': 3.43}, {'connected_gene': 'RNU5E-2P', 'score': 0.77}, {'connected_gene': 'MIR1537', 'score': 0.44}]
chr1	GH01I235916	235916151	235924799	1.75	[{'connected_gene': 'LYST', 'score': 25.51}, {'connected_gene': 'ARID4B', 'score': 13.99}, {'connected_gene': 'RNU5E-2P', 'score': 11.36}, {'connected_gene': 'TBCE', 'score': 9.8}, {'connected_gene': 'ENSG00000229291', 'score': 5.07}, {'connected_gene': 'TOMM20', 'score': 5.01}, {'connected_gene': 'GPR137B', 'score': 2.88}, {'connected_gene': 'EDARADD', 'score': 2.65}, {'connected_gene': 'RNU6-968P', 'score': 0.44}, {'connected_gene': 'ENSG00000237845', 'score': 0.34}, {'connected_gene': 'LOC105373215', 'score': 0.31}, {'connected_gene': 'LOC105373212', 'score': 0.23}]
chr1	GH01I235862	235862151	235869149	2.78	[{'connected_gene': 'LYST', 'score': 573.36}, {'connected_gene': 'ENSG00000273058', 'score': 79.02}, {'connected_gene': 'ARID4B', 'score': 73.36}, {'connected_gene': 'ENSG00000230325', 'score': 53.09}, {'connected_gene': 'RPS21P1', 'score': 47.47}, {'connected_gene': 'MTR', 'score': 44.19}, {'connected_gene': 'HEATR1', 'score': 42.46}, {'connected_gene': 'TBCE', 'score': 40.01}, {'connected_gene': 'GGPS1', 'score': 33.54}, {'connected_gene': 'RNU6-968P', 'score': 12.11}, {'connected_gene': 'LDHAP2', 'score': 10.12}, {'connected_gene': 'GPR137B', 'score': 2.39}, {'connected_gene': 'RNU5E-2P', 'score': 0.77}]
chr1	GH01I235971	235971069	235973170	1.91	[{'connected_gene': 'LOC105373212', 'score': 550.77}, {'connected_gene': 'ENSG00000229291', 'score': 550.77}, {'connected_gene': 'RNU5E-2P', 'score': 11.44}, {'connected_gene': 'GNG4', 'score': 10.14}, {'connected_gene': 'GPR137B', 'score': 3.02}]
chr1	GH01I235986	235986800	235987600	1.2	[{'connected_gene': 'RNU5E-2P', 'score': 10.39}, {'connected_gene': 'GPR137B', 'score': 2.25}, {'connected_gene': 'LOC105373212', 'score': 0.39}, {'connected_gene': 'ENSG00000252822', 'score': 0.19}, {'connected_gene': 'NID1', 'score': 0.18}]
chr1	GH01I236288	236288068	236289071	0.78	[{'connected_gene': 'LOC100130485', 'score': 550.77}, {'connected_gene': 'LDHAP2', 'score': 10.94}, {'connected_gene': 'GPR137B', 'score': 10.42}, {'connected_gene': 'HEATR1', 'score': 10.39}, {'connected_gene': 'ARID4B', 'score': 10.24}, {'connected_gene': 'LYST', 'score': 10.01}, {'connected_gene': 'ENSG00000230325', 'score': 9.79}, {'connected_gene': 'ERO1B', 'score': 6.97}, {'connected_gene': 'EDARADD', 'score': 0.22}]
chr1	GH01I235997	235997715	236002302	1.59	[{'connected_gene': 'ENSG00000273058', 'score': 10.62}, {'connected_gene': 'ENSG00000229291', 'score': 4.91}, {'connected_gene': 'GPR137B', 'score': 2.31}, {'connected_gene': 'LOC105373212', 'score': 0.31}, {'connected_gene': 'ENSG00000252822', 'score': 0.21}, {'connected_gene': 'NID1', 'score': 0.2}]
chr1	GH01I236228	236228601	236228800	0.2	[{'connected_gene': 'GC01P236268', 'score': 0.28}, {'connected_gene': 'ERO1B', 'score': 0.23}, {'connected_gene': 'GPR137B', 'score': 0.17}]
chr1	GH01I236151	236150101	236150250	0.77	[{'connected_gene': 'ENSG00000273058', 'score': 45.58}, {'connected_gene': 'ARID4B', 'score': 45.05}, {'connected_gene': 'ENSG00000230325', 'score': 33.02}, {'connected_gene': 'RPS21P1', 'score': 28.13}, {'connected_gene': 'MTR', 'score': 26.81}, {'connected_gene': 'GGPS1', 'score': 22.29}, {'connected_gene': 'TBCE', 'score': 22.13}, {'connected_gene': 'HEATR1', 'score': 18.24}, {'connected_gene': 'GPR137B', 'score': 17.83}, {'connected_gene': 'GC01P236268', 'score': 0.13}]
chr1	GH01I236150	236150331	236150748	0.69	[{'connected_gene': 'ENSG00000273058', 'score': 25.13}, {'connected_gene': 'ARID4B', 'score': 22.96}, {'connected_gene': 'ENSG00000230325', 'score': 22.63}, {'connected_gene': 'RPS21P1', 'score': 19.32}, {'connected_gene': 'MTR', 'score': 13.97}, {'connected_gene': 'TBCE', 'score': 11.31}, {'connected_gene': 'HEATR1', 'score': 9.81}, {'connected_gene': 'GPR137B', 'score': 0.44}, {'connected_gene': 'GC01P236268', 'score': 0.13}]
chr1	GH01I235983	235983037	235986118	1.24	[{'connected_gene': 'ENSG00000252822', 'score': 11.25}, {'connected_gene': 'NID1', 'score': 11.25}, {'connected_gene': 'RNU5E-2P', 'score': 11.19}, {'connected_gene': 'GNG4', 'score': 10.44}, {'connected_gene': 'ENSG00000229291', 'score': 4.58}, {'connected_gene': 'GPR137B', 'score': 2.73}, {'connected_gene': 'LOC105373212', 'score': 0.39}]