PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000367478	[[186280783, 186283158], [186283760, 186283856], [186286613, 186286732], [186287578, 186287735], [186287864, 186287960], [186289443, 186289550], [186291449, 186291544], [186291649, 186291718], [186292817, 186293002], [186294895, 186294986], [186295235, 186295367], [186296591, 186296792], [186300629, 186300713], [186301326, 186301475], [186302253, 186302526], [186303456, 186303665], [186304199, 186304261], [186304469, 186304675], [186305627, 186305826], [186306144, 186306288], [186307164, 186307375], [186308773, 186308904], [186310159, 186310291], [186310383, 186310521], [186312457, 186312605], [186313037, 186313222], [186313506, 186313710], [186314711, 186314828], [186315266, 186315419], [186316423, 186316590], [186319354, 186319520], [186320461, 186320602], [186321107, 186321242], [186322819, 186322982], [186324541, 186324690], [186324766, 186324900], [186325417, 186325581], [186326528, 186326755], [186327674, 186327782], [186328930, 186329128], [186329404, 186329496], [186329896, 186330037], [186330753, 186330841], [186330920, 186331001], [186331419, 186331512], [186331968, 186332133], [186332473, 186332577], [186337017, 186337114], [186340101, 186340175], [186342490, 186342595], [186344009, 186344457]]	[[186283102, 186283158], [186283760, 186283856], [186286613, 186286732], [186287578, 186287735], [186287864, 186287960], [186289443, 186289550], [186291449, 186291544], [186291649, 186291718], [186292817, 186293002], [186294895, 186294986], [186295235, 186295367], [186296591, 186296792], [186300629, 186300713], [186301326, 186301475], [186302253, 186302526], [186303456, 186303665], [186304199, 186304261], [186304469, 186304675], [186305627, 186305826], [186306144, 186306288], [186307164, 186307375], [186308773, 186308904], [186310159, 186310291], [186310383, 186310521], [186312457, 186312605], [186313037, 186313222], [186313506, 186313710], [186314711, 186314828], [186315266, 186315419], [186316423, 186316590], [186319354, 186319520], [186320461, 186320602], [186321107, 186321242], [186322819, 186322982], [186324541, 186324690], [186324766, 186324900], [186325417, 186325581], [186326528, 186326755], [186327674, 186327782], [186328930, 186329128], [186329404, 186329496], [186329896, 186330037], [186330753, 186330841], [186330920, 186331001], [186331419, 186331512], [186331968, 186332133], [186332473, 186332577], [186337017, 186337114], [186340101, 186340175], [186342490, 186342595], [186344009, 186344160]]
ENST00000467810	[[186287636, 186287735], [186287864, 186287960], [186289443, 186289550], [186291449, 186291544], [186291649, 186291833]]	None
ENST00000492973	[[186294650, 186294986], [186295235, 186295352]]	None
ENST00000481347	[[186307318, 186307375], [186308773, 186308904], [186310159, 186310291], [186310383, 186312605], [186313037, 186313222]]	None
ENST00000491783	[[186320554, 186320602], [186321107, 186321242], [186322819, 186322982], [186324541, 186324690], [186324766, 186324900], [186325417, 186325670]]	None
ENST00000469463	[[186321083, 186321242], [186322819, 186323080]]	None
ENST00000474852	[[186321146, 186321242], [186322819, 186323012], [186324541, 186324690], [186324766, 186324900], [186325417, 186325581], [186326528, 186326755], [186327674, 186327782], [186328930, 186329128], [186329404, 186329496], [186329896, 186330037], [186330753, 186330841], [186330920, 186331001], [186331419, 186331512], [186331968, 186332133], [186332473, 186332577], [186337017, 186337114], [186340101, 186340175], [186342490, 186342595], [186344009, 186344457]]	None
ENST00000451586	[[186342524, 186342595], [186344009, 186344318], [186344690, 186344825]]	[[186342524, 186342595], [186344009, 186344318], [186344690, 186344760]]
NM_003292	[[186280783, 186283158], [186283760, 186283856], [186286613, 186286732], [186287578, 186287735], [186287864, 186287960], [186289443, 186289550], [186291449, 186291544], [186291649, 186291718], [186292817, 186293002], [186294895, 186294986], [186295235, 186295367], [186296591, 186296792], [186300629, 186300713], [186301326, 186301475], [186302253, 186302526], [186303456, 186303665], [186304199, 186304261], [186304469, 186304675], [186305627, 186305826], [186306144, 186306288], [186307164, 186307375], [186308773, 186308904], [186310159, 186310291], [186310383, 186310521], [186312457, 186312605], [186313037, 186313222], [186313506, 186313710], [186314711, 186314828], [186315266, 186315419], [186316423, 186316590], [186319354, 186319520], [186320461, 186320602], [186321107, 186321242], [186322819, 186322982], [186324541, 186324690], [186324766, 186324900], [186325417, 186325581], [186326528, 186326755], [186327674, 186327782], [186328930, 186329128], [186329404, 186329496], [186329896, 186330037], [186330753, 186330841], [186330920, 186331001], [186331419, 186331512], [186331968, 186332133], [186332473, 186332577], [186337017, 186337114], [186340101, 186340175], [186342490, 186342595], [186344009, 186344457]]	[[186283102, 186283158], [186283760, 186283856], [186286613, 186286732], [186287578, 186287735], [186287864, 186287960], [186289443, 186289550], [186291449, 186291544], [186291649, 186291718], [186292817, 186293002], [186294895, 186294986], [186295235, 186295367], [186296591, 186296792], [186300629, 186300713], [186301326, 186301475], [186302253, 186302526], [186303456, 186303665], [186304199, 186304261], [186304469, 186304675], [186305627, 186305826], [186306144, 186306288], [186307164, 186307375], [186308773, 186308904], [186310159, 186310291], [186310383, 186310521], [186312457, 186312605], [186313037, 186313222], [186313506, 186313710], [186314711, 186314828], [186315266, 186315419], [186316423, 186316590], [186319354, 186319520], [186320461, 186320602], [186321107, 186321242], [186322819, 186322982], [186324541, 186324690], [186324766, 186324900], [186325417, 186325581], [186326528, 186326755], [186327674, 186327782], [186328930, 186329128], [186329404, 186329496], [186329896, 186330037], [186330753, 186330841], [186330920, 186331001], [186331419, 186331512], [186331968, 186332133], [186332473, 186332577], [186337017, 186337114], [186340101, 186340175], [186342490, 186342595], [186344009, 186344160]]

Promoter

Chrom	Start	End	Description
chr1	186344262	186344277	CAGE_peak_4_at_TPR_5end
chr1	186344351	186344370	CAGE_peak_2_at_TPR_5end
chr1	186344371	186344415	CAGE_peak_1_at_TPR_5end
chr1	186344456	186344465	CAGE_peak_5_at_TPR_5end
chr1	186344802	186344895	CAGE_peak_3_at_TPR_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I186654	186654697	186655098	0.41	[{'connected_gene': 'TPR', 'score': 14.74}, {'connected_gene': 'PTGS2', 'score': 12.56}, {'connected_gene': 'ENSG00000273198', 'score': 7.12}, {'connected_gene': 'PLA2G4A', 'score': 3.8}, {'connected_gene': 'ODR4', 'score': 1.63}, {'connected_gene': 'GC01P186644', 'score': 0.39}, {'connected_gene': 'GC01P186643', 'score': 0.39}]
chr1	GH01I186615	186615448	186615579	0.24	[{'connected_gene': 'TPR', 'score': 2.92}, {'connected_gene': 'PTGS2', 'score': 1.85}, {'connected_gene': 'PLA2G4A', 'score': 1.72}, {'connected_gene': 'GC01P186627', 'score': 0.39}, {'connected_gene': 'GC01P186626', 'score': 0.39}, {'connected_gene': 'LOC100131939', 'score': 0.29}]
chr1	GH01I186373	186373510	186377187	2.13	[{'connected_gene': 'TPR', 'score': 625.41}, {'connected_gene': 'ODR4', 'score': 558.18}, {'connected_gene': 'OCLM', 'score': 48.51}, {'connected_gene': 'ENSG00000228238', 'score': 5.29}, {'connected_gene': 'GC01P186372', 'score': 0.77}, {'connected_gene': 'GC01M186369', 'score': 0.18}]
chr1	GH01I187041	187041030	187044493	0.6	[{'connected_gene': 'TPR', 'score': 29.71}, {'connected_gene': 'OCLM', 'score': 25.02}, {'connected_gene': 'GC01P187071', 'score': 0.31}, {'connected_gene': 'PLA2G4A', 'score': 0.08}]
chr1	GH01I186212	186212600	186212878	1.07	[{'connected_gene': 'TPR', 'score': 19.78}, {'connected_gene': 'OCLM', 'score': 11.85}, {'connected_gene': 'PACERR', 'score': 4.38}, {'connected_gene': 'LOC105371654', 'score': 0.44}, {'connected_gene': 'ENSG00000224691', 'score': 0.28}]
chr1	GH01I185404	185403001	185403200	0.38	[{'connected_gene': 'TPR', 'score': 19.71}, {'connected_gene': 'OCLM', 'score': 11.79}, {'connected_gene': 'LOC100422414', 'score': 5.34}, {'connected_gene': 'LOC102724897', 'score': 0.29}, {'connected_gene': 'RNU7-183P', 'score': 0.29}]
chr1	GH01I185398	185398803	185401758	0.91	[{'connected_gene': 'TPR', 'score': 23.22}, {'connected_gene': 'LOC100422414', 'score': 5.42}, {'connected_gene': 'EDEM3', 'score': 5.26}, {'connected_gene': 'LOC102724897', 'score': 0.31}, {'connected_gene': 'RNU7-183P', 'score': 0.29}]
chr1	GH01I186828	186828329	186830899	2.06	[{'connected_gene': 'PLA2G4A', 'score': 554.93}, {'connected_gene': 'TPR', 'score': 19.97}, {'connected_gene': 'OCLM', 'score': 13.15}, {'connected_gene': 'PTGS2', 'score': 4.1}, {'connected_gene': 'GC01P187071', 'score': 0.07}]
chr1	GH01I186081	186081789	186083745	1.44	[{'connected_gene': 'OCLM', 'score': 14.07}, {'connected_gene': 'TPR', 'score': 12.65}, {'connected_gene': 'ODR4', 'score': 11.33}, {'connected_gene': 'HMCN1', 'score': 9.22}, {'connected_gene': 'PDC', 'score': 1.32}, {'connected_gene': 'ENSG00000224691', 'score': 0.16}, {'connected_gene': 'GC01M185927', 'score': 0.1}]
chr1	GH01I185374	185374659	185377759	1.19	[{'connected_gene': 'IVNS1ABP', 'score': 35.59}, {'connected_gene': 'EDEM3', 'score': 12.85}, {'connected_gene': 'TPR', 'score': 12.62}, {'connected_gene': 'RNU7-183P', 'score': 11.36}, {'connected_gene': 'ODR4', 'score': 11.3}, {'connected_gene': 'FAM129A', 'score': 11.28}, {'connected_gene': 'SWT1', 'score': 8.84}, {'connected_gene': 'LOC100422414', 'score': 5.45}, {'connected_gene': 'RNF2', 'score': 5.12}, {'connected_gene': 'TRMT1L', 'score': 1.21}, {'connected_gene': 'LOC102724897', 'score': 0.44}]
chr1	GH01I186678	186678875	186682952	2.1	[{'connected_gene': 'PACERR', 'score': 558.21}, {'connected_gene': 'PTGS2', 'score': 550.77}, {'connected_gene': 'TPR', 'score': 18.13}, {'connected_gene': 'LOC102724919', 'score': 6.66}, {'connected_gene': 'ENSG00000228238', 'score': 4.57}, {'connected_gene': 'PLA2G4A', 'score': 0.11}]
chr1	GH01I186348	186348469	186348578	0.52	[{'connected_gene': 'GC01P186372', 'score': 0.34}, {'connected_gene': 'TPR', 'score': 0.31}, {'connected_gene': 'GC01M186320', 'score': 0.28}, {'connected_gene': 'RNU6-1240P', 'score': 0.28}]