PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000526995	[[36508576, 36512200], [36514100, 36514178], [36516525, 36516597], [36518657, 36518816], [36520039, 36520190], [36522769, 36523087], [36531597, 36531822]]	[[36511387, 36512200], [36514100, 36514178], [36516525, 36516597], [36518657, 36518816], [36520039, 36520190], [36522769, 36523065]]
ENST00000348124	[[36510722, 36512200], [36514100, 36514178], [36516525, 36516597], [36518657, 36518816], [36520039, 36520190], [36522769, 36523087], [36523268, 36523361], [36531597, 36531806]]	[[36511387, 36512200], [36514100, 36514178], [36516525, 36516597], [36518657, 36518816], [36520039, 36520190], [36522769, 36523065]]
ENST00000529150	[[36511926, 36512200], [36514100, 36514178], [36516525, 36516597], [36517909, 36518060]]	None
NM_145803	[[36505316, 36512200], [36514100, 36514178], [36516525, 36516597], [36518657, 36518816], [36520039, 36520190], [36522769, 36523087], [36523268, 36523361], [36531597, 36531863]]	[[36511387, 36512200], [36514100, 36514178], [36516525, 36516597], [36518657, 36518816], [36520039, 36520190], [36522769, 36523065]]
NM_004620	[[36505316, 36512200], [36514100, 36514178], [36516525, 36516597], [36518657, 36518816], [36520039, 36520190], [36522769, 36523087], [36531597, 36531863]]	[[36511387, 36512200], [36514100, 36514178], [36516525, 36516597], [36518657, 36518816], [36520039, 36520190], [36522769, 36523065]]

Promoter

Chrom	Start	End	Description
chr11	36531774	36531858	CAGE_peak_1_at_TRAF6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I036408	36408269	36413618	1.51	[{'connected_gene': 'PRR5L', 'score': 35.33}, {'connected_gene': 'TRAF6', 'score': 3.71}, {'connected_gene': 'COMMD9', 'score': 1.21}, {'connected_gene': 'ENSG00000255060', 'score': 0.37}, {'connected_gene': 'ENSG00000255186', 'score': 0.34}]
chr11	GH11I036499	36499280	36503812	0.92	[{'connected_gene': 'PRR5L', 'score': 17.5}, {'connected_gene': 'ENSG00000255060', 'score': 10.12}, {'connected_gene': 'TRAF6', 'score': 5.44}, {'connected_gene': 'GC11M036483', 'score': 0.39}]
chr11	GH11I036469	36469060	36471074	0.72	[{'connected_gene': 'PRR5L', 'score': 18.95}, {'connected_gene': 'ENSG00000255060', 'score': 11.85}, {'connected_gene': 'RAG1', 'score': 10.92}, {'connected_gene': 'TRAF6', 'score': 10.92}, {'connected_gene': 'COMMD9', 'score': 10.86}, {'connected_gene': 'GC11M036483', 'score': 0.37}, {'connected_gene': 'GC11P036439', 'score': 0.29}]
chr11	GH11I036419	36419867	36423167	1.47	[{'connected_gene': 'PRR5L', 'score': 12.02}, {'connected_gene': 'COMMD9', 'score': 1.78}, {'connected_gene': 'TRAF6', 'score': 1.6}, {'connected_gene': 'ENSG00000255060', 'score': 0.77}, {'connected_gene': 'ENSG00000255186', 'score': 0.29}]
chr11	GH11I036507	36507872	36513056	2.09	[{'connected_gene': 'TRAF6', 'score': 569.26}, {'connected_gene': 'GC11P036511', 'score': 550.77}, {'connected_gene': 'RAG1', 'score': 550.77}, {'connected_gene': 'ENSG00000280331', 'score': 550.77}, {'connected_gene': 'GC11P036512', 'score': 550.77}, {'connected_gene': 'PRR5L', 'score': 5.77}, {'connected_gene': 'COMMD9', 'score': 4.77}, {'connected_gene': 'GC11M036546', 'score': 0.28}]
chr11	GH11I036090	36090744	36093247	1.09	[{'connected_gene': 'TRAF6', 'score': 10.99}, {'connected_gene': 'LDLRAD3', 'score': 10.07}, {'connected_gene': 'LOC101928510', 'score': 0.39}, {'connected_gene': 'PIR54286', 'score': 0.26}]
chr11	GH11I036103	36103906	36106948	1.4	[{'connected_gene': 'TRAF6', 'score': 19.54}, {'connected_gene': 'PIR54286', 'score': 0.31}, {'connected_gene': 'LOC101928510', 'score': 0.31}, {'connected_gene': 'LDLRAD3', 'score': 0.1}]
chr11	GH11I036571	36571933	36572368	0.46	[{'connected_gene': 'RAG2', 'score': 18.72}, {'connected_gene': 'RAG1', 'score': 18.69}, {'connected_gene': 'TRAF6', 'score': 10.69}, {'connected_gene': 'GC11P036555', 'score': 0.37}, {'connected_gene': 'C11orf74', 'score': 0.34}]
chr11	GH11I036626	36626493	36628903	0.91	[{'connected_gene': 'RAG2', 'score': 12.61}, {'connected_gene': 'C11orf74', 'score': 11.77}, {'connected_gene': 'RAG1', 'score': 10.48}, {'connected_gene': 'TRAF6', 'score': 10.48}, {'connected_gene': 'GC11M036597', 'score': 0.34}, {'connected_gene': 'GC11M036644', 'score': 0.31}]
chr11	GH11I036629	36629646	36632273	0.43	[{'connected_gene': 'RAG2', 'score': 11.72}, {'connected_gene': 'C11orf74', 'score': 11.7}, {'connected_gene': 'RAG1', 'score': 10.3}, {'connected_gene': 'TRAF6', 'score': 10.3}, {'connected_gene': 'GC11M036644', 'score': 0.34}, {'connected_gene': 'GC11M036597', 'score': 0.31}]
chr11	GH11I036292	36292600	36292800	0.72	[{'connected_gene': 'RAG1', 'score': 10.63}, {'connected_gene': 'TRAF6', 'score': 10.63}, {'connected_gene': 'ENSG00000255060', 'score': 10.31}, {'connected_gene': 'COMMD9', 'score': 0.77}, {'connected_gene': 'PRR5L', 'score': 0.77}]
chr11	GH11I036293	36292411	36292560	0.78	[{'connected_gene': 'RAG1', 'score': 10.63}, {'connected_gene': 'TRAF6', 'score': 10.63}, {'connected_gene': 'ENSG00000255060', 'score': 10.31}, {'connected_gene': 'COMMD9', 'score': 0.77}, {'connected_gene': 'PRR5L', 'score': 0.77}]
chr11	GH11I036541	36541000	36541401	0.95	[{'connected_gene': 'RAG1', 'score': 11.98}, {'connected_gene': 'TRAF6', 'score': 11.98}, {'connected_gene': 'C11orf74', 'score': 10.2}, {'connected_gene': 'RAG2', 'score': 10.19}, {'connected_gene': 'GC11M036546', 'score': 0.44}]
chr11	GH11I036569	36569122	36569460	0.42	[{'connected_gene': 'RAG1', 'score': 34.08}, {'connected_gene': 'RAG2', 'score': 30.22}, {'connected_gene': 'C11orf74', 'score': 12.0}, {'connected_gene': 'TRAF6', 'score': 10.42}, {'connected_gene': 'GC11P036555', 'score': 0.39}]
chr11	GH11I036567	36567963	36568022	0.7	[{'connected_gene': 'RAG1', 'score': 560.42}, {'connected_gene': 'C11orf74', 'score': 11.97}, {'connected_gene': 'RAG2', 'score': 11.95}, {'connected_gene': 'TRAF6', 'score': 10.42}, {'connected_gene': 'GC11P036555', 'score': 0.39}]
chr11	GH11I035661	35661636	35664172	2.1	[{'connected_gene': 'TRIM44', 'score': 550.77}, {'connected_gene': 'TRAF6', 'score': 22.6}, {'connected_gene': 'ENSG00000251194', 'score': 14.04}, {'connected_gene': 'CD44-AS1', 'score': 12.41}, {'connected_gene': 'COMMD9', 'score': 9.72}, {'connected_gene': 'GC11M035597', 'score': 0.11}]
chr11	GH11I036493	36493091	36493202	0.54	[{'connected_gene': 'COMMD9', 'score': 10.89}, {'connected_gene': 'ENSG00000255060', 'score': 10.66}, {'connected_gene': 'PRR5L', 'score': 10.49}, {'connected_gene': 'GC11M036483', 'score': 0.44}, {'connected_gene': 'TRAF6', 'score': 0.37}]
chr11	GH11I036492	36492831	36493000	0.62	[{'connected_gene': 'COMMD9', 'score': 10.89}, {'connected_gene': 'ENSG00000255060', 'score': 10.66}, {'connected_gene': 'PRR5L', 'score': 10.49}, {'connected_gene': 'GC11M036483', 'score': 0.44}, {'connected_gene': 'TRAF6', 'score': 0.37}]
chr11	GH11I036288	36288400	36290060	2.07	[{'connected_gene': 'COMMD9', 'score': 561.23}, {'connected_gene': 'TRAF6', 'score': 11.02}, {'connected_gene': 'ENSG00000255060', 'score': 10.16}, {'connected_gene': 'GC11M036246', 'score': 0.28}]
chr11	GH11I035579	35579407	35585046	1.3	[{'connected_gene': 'PAMR1', 'score': 19.95}, {'connected_gene': 'TRAF6', 'score': 10.97}, {'connected_gene': 'TRIM44', 'score': 9.53}, {'connected_gene': 'GC11P035579', 'score': 0.77}, {'connected_gene': 'ENSG00000254669', 'score': 0.77}]
chr11	GH11I035617	35617378	35624710	2.56	[{'connected_gene': 'FJX1', 'score': 557.8}, {'connected_gene': 'TRAF6', 'score': 13.94}, {'connected_gene': 'TRIM44', 'score': 10.85}, {'connected_gene': 'COMMD9', 'score': 9.72}, {'connected_gene': 'PAMR1', 'score': 5.29}, {'connected_gene': 'ENSG00000254686', 'score': 0.28}, {'connected_gene': 'GC11M035597', 'score': 0.09}]
chr11	GH11I036593	36593847	36595773	2.26	[{'connected_gene': 'C11orf74', 'score': 550.77}, {'connected_gene': 'TRAF6', 'score': 13.32}, {'connected_gene': 'PRR5L', 'score': 6.05}, {'connected_gene': 'RAG2', 'score': 0.77}]
chr11	GH11I036487	36487164	36488983	0.4	[{'connected_gene': 'GC11M036483', 'score': 550.77}, {'connected_gene': 'PRR5L', 'score': 17.72}, {'connected_gene': 'TRAF6', 'score': 16.98}, {'connected_gene': 'RAG1', 'score': 12.13}, {'connected_gene': 'COMMD9', 'score': 11.12}, {'connected_gene': 'ENSG00000255060', 'score': 10.71}]
chr11	GH11I036603	36603941	36606179	0.49	[{'connected_gene': 'GC11M036597', 'score': 550.77}, {'connected_gene': 'RAG1', 'score': 10.06}, {'connected_gene': 'TRAF6', 'score': 10.06}, {'connected_gene': 'RAG2', 'score': 0.44}, {'connected_gene': 'C11orf74', 'score': 0.39}]
chr11	GH11I036606	36606420	36607491	0.2	[{'connected_gene': 'GC11M036597', 'score': 550.77}, {'connected_gene': 'RAG1', 'score': 10.06}, {'connected_gene': 'TRAF6', 'score': 10.06}, {'connected_gene': 'C11orf74', 'score': 0.39}, {'connected_gene': 'GC11M036644', 'score': 0.25}]
chr11	GH11I036384	36384772	36386069	1.01	[{'connected_gene': 'ENSG00000255186', 'score': 550.77}, {'connected_gene': 'ENSG00000255060', 'score': 11.85}, {'connected_gene': 'COMMD9', 'score': 10.32}, {'connected_gene': 'TRAF6', 'score': 3.24}, {'connected_gene': 'PRR5L', 'score': 1.33}, {'connected_gene': 'GC11P036377', 'score': 0.44}]
chr11	GH11I036148	36148536	36151397	1.59	[{'connected_gene': 'PIR39980', 'score': 550.77}, {'connected_gene': 'COMMD9', 'score': 2.26}, {'connected_gene': 'TRAF6', 'score': 1.39}, {'connected_gene': 'GC11M036161', 'score': 0.34}, {'connected_gene': 'LDLRAD3', 'score': 0.08}]
chr11	GH11I036312	36312229	36313400	0.64	[{'connected_gene': 'ENSG00000255060', 'score': 10.95}, {'connected_gene': 'COMMD9', 'score': 10.78}, {'connected_gene': 'RAG1', 'score': 10.04}, {'connected_gene': 'TRAF6', 'score': 10.04}, {'connected_gene': 'RAG2', 'score': 9.58}, {'connected_gene': 'C11orf74', 'score': 9.2}, {'connected_gene': 'ENSG00000254566', 'score': 0.39}, {'connected_gene': 'PRR5L', 'score': 0.37}]