PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000455432	[[122494678, 122494761], [122514815, 122514909], [122516285, 122516382], [122518984, 122519100], [122520580, 122520660], [122522709, 122522794]]	[[122494678, 122494761], [122514815, 122514909], [122516285, 122516382], [122518984, 122519100], [122520580, 122520660], [122522709, 122522794]]
ENST00000389682	[[122513108, 122513421], [122514815, 122514909], [122516285, 122516382], [122518984, 122519100], [122520580, 122520660], [122522709, 122525429]]	[[122513355, 122513421], [122514815, 122514909], [122516285, 122516382], [122518984, 122519100], [122520580, 122520660], [122522709, 122522943]]
ENST00000467324	[[122513234, 122513529], [122514815, 122514909], [122516285, 122516382], [122518984, 122519100], [122520580, 122520660], [122522709, 122524870]]	None
ENST00000483698	[[122513235, 122513421], [122514815, 122515184]]	None
ENST00000490717	[[122513235, 122513529], [122516285, 122516382], [122518984, 122519100], [122520580, 122520633]]	None
ENST00000478165	[[122513235, 122513529], [122518984, 122519100], [122520580, 122520660], [122522709, 122522797]]	None
ENST00000498545	[[122513235, 122513421], [122520580, 122520660], [122522709, 122523561]]	None
ENST00000490104	[[122513238, 122513421], [122514815, 122515010], [122516285, 122516382], [122518984, 122519100], [122520580, 122520660], [122522709, 122524755]]	None
ENST00000536142	[[122513256, 122513421], [122514815, 122514909], [122516285, 122516382], [122518984, 122519100], [122522709, 122523325]]	[[122513355, 122513421], [122514815, 122514909], [122516285, 122516382], [122518984, 122519100], [122522709, 122522783]]
ENST00000495112	[[122513260, 122513421], [122516285, 122516382], [122518984, 122519100], [122520580, 122520660], [122522709, 122522860]]	None
ENST00000481818	[[122513278, 122513529], [122514815, 122514985]]	None
ENST00000409193	[[122513746, 122514267], [122514815, 122514909], [122516285, 122516382], [122518984, 122519100], [122520580, 122520660], [122522709, 122523237]]	[[122514216, 122514267], [122514815, 122514909], [122516285, 122516382], [122518984, 122519100], [122520580, 122520660], [122522709, 122522943]]
NR_048558	[[122513120, 122513421], [122520580, 122520660], [122522709, 122525429]]	None
NR_048557	[[122513120, 122513421], [122518984, 122519100], [122520580, 122520660], [122522709, 122525429]]	None
NR_048556	[[122513120, 122513421], [122516285, 122516382], [122518984, 122519100], [122520580, 122520660], [122522709, 122525429]]	None
NM_001261401	[[122513120, 122513421], [122514815, 122514909], [122516285, 122516382], [122518984, 122519100], [122522709, 122525429]]	[[122513355, 122513421], [122514815, 122514909], [122516285, 122516382], [122518984, 122519100], [122522709, 122522783]]
NM_004622	[[122513120, 122513421], [122514815, 122514909], [122516285, 122516382], [122518984, 122519100], [122520580, 122520660], [122522709, 122525429]]	[[122513355, 122513421], [122514815, 122514909], [122516285, 122516382], [122518984, 122519100], [122520580, 122520660], [122522709, 122522943]]
NR_048559	[[122513120, 122513529], [122518984, 122519100], [122520580, 122520660], [122522709, 122525429]]	None

Promoter

Chrom	Start	End	Description
chr2	122494676	122494689	CAGE_peak_3_at_TSN_5end
chr2	122513208	122513293	CAGE_peak_1_at_TSN_5end
chr2	122513295	122513344	CAGE_peak_2_at_TSN_5end
chr2	122514086	122514090	CAGE_peak_5_at_TSN_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I121476	121476126	121477180	0.83	[{'connected_gene': 'TSN', 'score': 10.46}, {'connected_gene': 'NIFK', 'score': 10.46}, {'connected_gene': 'ENSG00000265451', 'score': 0.23}, {'connected_gene': 'GC02M121346', 'score': 0.19}, {'connected_gene': 'CLASP1', 'score': 0.09}]
chr2	GH02I121399	121399837	121400722	0.31	[{'connected_gene': 'TSN', 'score': 10.78}, {'connected_gene': 'NIFK', 'score': 10.78}, {'connected_gene': 'LINC01823', 'score': 6.94}, {'connected_gene': 'GC02M121346', 'score': 0.77}, {'connected_gene': 'GC02M121365', 'score': 0.29}, {'connected_gene': 'CLASP1', 'score': 0.07}]
chr2	GH02I121735	121735142	121739069	2	[{'connected_gene': 'TSN', 'score': 550.77}, {'connected_gene': 'NIFK', 'score': 550.77}, {'connected_gene': 'LINC01823', 'score': 9.71}, {'connected_gene': 'ENSG00000270798', 'score': 0.44}]
chr2	GH02I121626	121626497	121627800	1	[{'connected_gene': 'TSN', 'score': 13.66}, {'connected_gene': 'LINC01823', 'score': 6.33}, {'connected_gene': 'GC02M121605', 'score': 0.34}, {'connected_gene': 'CLASP1', 'score': 0.34}]
chr2	GH02I121754	121754542	121757199	2.08	[{'connected_gene': 'TSN', 'score': 550.37}, {'connected_gene': 'ENSG00000270798', 'score': 0.44}, {'connected_gene': 'GC02M121766', 'score': 0.39}]
chr2	GH02I121706	121706734	121709234	1.02	[{'connected_gene': 'NPM1P32', 'score': 550.77}, {'connected_gene': 'TSN', 'score': 11.81}, {'connected_gene': 'NIFK', 'score': 11.81}, {'connected_gene': 'ENSG00000279721', 'score': 0.37}, {'connected_gene': 'NIFK-AS1', 'score': 0.22}]
chr2	GH02I121710	121710202	121710315	0.22	[{'connected_gene': 'NPM1P32', 'score': 550.77}, {'connected_gene': 'TSN', 'score': 11.81}, {'connected_gene': 'NIFK', 'score': 11.81}, {'connected_gene': 'NIFK-AS1', 'score': 0.21}]
chr2	GH02I120785	120785111	120789067	0.84	[{'connected_gene': 'GLI2', 'score': 11.52}, {'connected_gene': 'TSN', 'score': 10.73}, {'connected_gene': 'GC02P120736', 'score': 0.23}, {'connected_gene': 'PIR37537', 'score': 0.21}]
chr2	GH02I120843	120843109	120843399	0.38	[{'connected_gene': 'GLI2', 'score': 10.8}, {'connected_gene': 'TSN', 'score': 9.69}, {'connected_gene': 'PIR37537', 'score': 0.44}, {'connected_gene': 'GC02P120736', 'score': 0.14}]
chr2	GH02I121524	121524431	121533647	2.04	[{'connected_gene': 'ENSG00000265451', 'score': 550.77}, {'connected_gene': 'RNU4ATAC', 'score': 550.77}, {'connected_gene': 'GC02P121532', 'score': 550.77}, {'connected_gene': 'TSN', 'score': 10.56}, {'connected_gene': 'NIFK', 'score': 10.56}, {'connected_gene': 'LINC01823', 'score': 6.23}, {'connected_gene': 'CLASP1', 'score': 4.79}, {'connected_gene': 'GC02M121346', 'score': 0.13}]