PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000333628	[[3153902, 3155157], [3155858, 3155969], [3156277, 3156386], [3157640, 3157760]]	[[3154096, 3155157], [3155858, 3155969], [3156277, 3156386], [3157640, 3157697]]
ENST00000489942	[[3154812, 3155289], [3155858, 3155969], [3156277, 3156386], [3157640, 3157760]]	None
NM_001310315	[[3153899, 3155289], [3155858, 3155969], [3156277, 3156386], [3157640, 3157783]]	[[3154096, 3155179]]
NM_001069	[[3153899, 3155157], [3155858, 3155969], [3156277, 3156386], [3157640, 3157783]]	[[3154096, 3155157], [3155858, 3155969], [3156277, 3156386], [3157640, 3157697]]

Promoter

Chrom	Start	End	Description
chr6	3157770	3157784	CAGE_peak_1_at_TUBB2A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I003073	3073562	3077179	1.42	[{'connected_gene': 'RIPK1', 'score': 564.17}, {'connected_gene': 'GC06P003076', 'score': 550.77}, {'connected_gene': 'BPHL', 'score': 12.79}, {'connected_gene': 'TUBB2B', 'score': 10.65}, {'connected_gene': 'PSMG4', 'score': 10.65}, {'connected_gene': 'TUBB2A', 'score': 4.9}, {'connected_gene': 'GC06M003076', 'score': 0.77}, {'connected_gene': 'ENSG00000272277', 'score': 0.44}]
chr6	GH06I003242	3242886	3243140	0.22	[{'connected_gene': 'TUBB2A', 'score': 12.57}, {'connected_gene': 'BPHL', 'score': 11.17}, {'connected_gene': 'ENSG00000228170', 'score': 10.87}, {'connected_gene': 'TUBB2B', 'score': 3.02}, {'connected_gene': 'PSMG4', 'score': 0.39}, {'connected_gene': 'PIR45758', 'score': 0.34}]
chr6	GH06I003246	3246622	3249686	1.53	[{'connected_gene': 'TUBB2A', 'score': 20.87}, {'connected_gene': 'TUBB2B', 'score': 17.06}, {'connected_gene': 'ENSG00000228170', 'score': 11.32}, {'connected_gene': 'BPHL', 'score': 10.93}, {'connected_gene': 'SLC22A23', 'score': 2.0}, {'connected_gene': 'PIR45758', 'score': 0.37}, {'connected_gene': 'PSMG4', 'score': 0.37}]
chr6	GH06I003171	3171485	3173085	0.85	[{'connected_gene': 'TUBB2A', 'score': 43.28}, {'connected_gene': 'TUBB2B', 'score': 16.01}, {'connected_gene': 'PSMG4', 'score': 11.61}, {'connected_gene': 'BPHL', 'score': 10.88}, {'connected_gene': 'TUBB2BP1', 'score': 0.44}, {'connected_gene': 'LOC105374889', 'score': 0.39}, {'connected_gene': 'GC06M003095', 'score': 0.37}, {'connected_gene': 'GC06P003150', 'score': 0.34}]
chr6	GH06I003205	3205736	3206629	0.7	[{'connected_gene': 'TUBB2A', 'score': 11.31}, {'connected_gene': 'TUBB2B', 'score': 11.0}, {'connected_gene': 'PSMG4', 'score': 11.0}, {'connected_gene': 'GC06P003208', 'score': 0.77}, {'connected_gene': 'LINC02525', 'score': 0.39}]
chr6	GH06I003156	3156309	3167906	2.78	[{'connected_gene': 'TUBB2A', 'score': 63.25}, {'connected_gene': 'TUBB2B', 'score': 53.37}, {'connected_gene': 'TUBB2BP1', 'score': 39.52}, {'connected_gene': 'PSMG4', 'score': 32.39}, {'connected_gene': 'PRPF4B', 'score': 25.57}, {'connected_gene': 'C6orf201', 'score': 11.34}, {'connected_gene': 'RIPK1', 'score': 11.2}, {'connected_gene': 'BPHL', 'score': 10.89}, {'connected_gene': 'LOC105374889', 'score': 0.77}, {'connected_gene': 'GC06P003150', 'score': 0.39}, {'connected_gene': 'GC06M003095', 'score': 0.31}]
chr6	GH06I003117	3117503	3121143	2.25	[{'connected_gene': 'BPHL', 'score': 556.08}, {'connected_gene': 'TUBB2A', 'score': 11.71}, {'connected_gene': 'ENSG00000228170', 'score': 11.58}, {'connected_gene': 'TUBB2B', 'score': 11.3}, {'connected_gene': 'PSMG4', 'score': 11.3}, {'connected_gene': 'TUBB2BP1', 'score': 6.14}, {'connected_gene': 'GC06P003115', 'score': 0.77}, {'connected_gene': 'GC06P003150', 'score': 0.29}, {'connected_gene': 'GC06M003095', 'score': 0.19}]
chr6	GH06I003386	3386007	3387042	0.88	[{'connected_gene': 'TUBB2B', 'score': 4.41}, {'connected_gene': 'TUBB2A', 'score': 4.17}, {'connected_gene': 'SLC22A23', 'score': 1.84}, {'connected_gene': 'GC06M003358', 'score': 0.37}, {'connected_gene': 'GC06M003328', 'score': 0.22}]
chr6	GH06I003125	3125275	3127000	1.37	[{'connected_gene': 'TUBB2B', 'score': 17.05}, {'connected_gene': 'TUBB2A', 'score': 11.73}, {'connected_gene': 'ENSG00000228170', 'score': 11.6}, {'connected_gene': 'PSMG4', 'score': 11.31}, {'connected_gene': 'BPHL', 'score': 0.44}, {'connected_gene': 'GC06P003150', 'score': 0.34}, {'connected_gene': 'GC06M003095', 'score': 0.21}]
chr6	GH06I003176	3176167	3177290	1.09	[{'connected_gene': 'TUBB2B', 'score': 16.15}, {'connected_gene': 'TUBB2A', 'score': 14.02}, {'connected_gene': 'ENSG00000228170', 'score': 12.21}, {'connected_gene': 'PSMG4', 'score': 11.62}, {'connected_gene': 'TUBB2BP1', 'score': 0.77}, {'connected_gene': 'GC06M003095', 'score': 0.39}, {'connected_gene': 'LOC105374889', 'score': 0.37}, {'connected_gene': 'GC06P003150', 'score': 0.31}]
chr6	GH06I003207	3207510	3210671	1.49	[{'connected_gene': 'GC06P003208', 'score': 550.77}, {'connected_gene': 'TUBB2B', 'score': 17.54}, {'connected_gene': 'PSMG4', 'score': 16.57}, {'connected_gene': 'TUBB2A', 'score': 13.02}, {'connected_gene': 'BPHL', 'score': 11.98}, {'connected_gene': 'ENSG00000228170', 'score': 10.86}, {'connected_gene': 'SERPINB9', 'score': 3.95}, {'connected_gene': 'GC06P003221', 'score': 0.39}]