Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000367718 [[173152872, 173156004], [173157659, 173157708], [173174449, 173174697]] [[173155654, 173156004], [173157659, 173157708], [173174449, 173174452]]
ENST00000281834 [[173152873, 173156004], [173157659, 173157708], [173176162, 173176452]] [[173155654, 173156004], [173157659, 173157708], [173176162, 173176315]]
ENST00000488053 [[173157602, 173157708], [173174449, 173174863]] None
NM_001297562 [[173152869, 173156004], [173157659, 173157708], [173174449, 173174697]] [[173155654, 173156004], [173157659, 173157708], [173174449, 173174452]]
NM_003326 [[173152869, 173156004], [173157659, 173157708], [173176162, 173176452]] [[173155654, 173156004], [173157659, 173157708], [173176162, 173176315]]
Promoter
Chrom Start End Description
chr1 173174520 173174532 CAGE_peak_9_at_TNFSF4_5end
chr1 173174580 173174592 CAGE_peak_8_at_TNFSF4_5end
chr1 173174598 173174624 CAGE_peak_4_at_TNFSF4_5end
chr1 173174630 173174644 CAGE_peak_7_at_TNFSF4_5end
chr1 173174664 173174677 CAGE_peak_6_at_TNFSF4_5end
chr1 173174681 173174702 CAGE_peak_5_at_TNFSF4_5end
chr1 173174706 173174733 CAGE_peak_3_at_TNFSF4_5end
chr1 173174759 173174799 CAGE_peak_2_at_TNFSF4_5end
chr1 173176462 173176477 CAGE_peak_1_at_TNFSF4_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr1 GH01I173209 173209534 173211958 0.76 [{'connected_gene': 'TNFSF18', 'score': 9.47}, {'connected_gene': 'TNFSF4', 'score': 0.77}, {'connected_gene': 'GC01M173270', 'score': 0.21}]
chr1 GH01I173200 173200909 173208843 1.82 [{'connected_gene': 'TNFSF4', 'score': 550.77}, {'connected_gene': 'ENSG00000224228', 'score': 10.24}, {'connected_gene': 'TNFSF18', 'score': 10.07}, {'connected_gene': 'ENSG00000226375', 'score': 4.83}]
chr1 GH01I173213 173213122 173213271 0.9 [{'connected_gene': 'TNFSF4', 'score': 0.44}, {'connected_gene': 'GC01M173270', 'score': 0.22}]
chr1 GH01I172892 172892612 172899926 1.44 [{'connected_gene': 'FASLG', 'score': 14.93}, {'connected_gene': 'TNFSF4', 'score': 11.74}, {'connected_gene': 'ENSG00000224228', 'score': 8.04}, {'connected_gene': 'SUCO', 'score': 3.46}, {'connected_gene': 'ENSG00000224000', 'score': 0.39}, {'connected_gene': 'AIMP1P2', 'score': 0.39}]
chr1 GH01I173409 173409084 173411714 1.47 [{'connected_gene': 'KLHL20', 'score': 11.15}, {'connected_gene': 'CENPL', 'score': 10.62}, {'connected_gene': 'DARS2', 'score': 10.62}, {'connected_gene': 'PRDX6', 'score': 10.25}, {'connected_gene': 'ENSG00000224228', 'score': 9.88}, {'connected_gene': 'TNFSF4', 'score': 2.17}, {'connected_gene': 'GC01M173428', 'score': 0.37}, {'connected_gene': 'LOC646870', 'score': 0.25}, {'connected_gene': 'LOC100506023', 'score': 0.2}]
chr1 GH01I172827 172827828 172828080 0.39 [{'connected_gene': 'ENSG00000224228', 'score': 10.98}, {'connected_gene': 'TNFSF18', 'score': 10.73}, {'connected_gene': 'TNFSF4', 'score': 1.93}, {'connected_gene': 'LOC105371618', 'score': 0.44}]
chr1 GH01I172931 172931534 172936792 1.67 [{'connected_gene': 'ENSG00000224228', 'score': 9.99}, {'connected_gene': 'TNFSF18', 'score': 4.1}, {'connected_gene': 'TNFSF4', 'score': 2.23}, {'connected_gene': 'ENSG00000224000', 'score': 0.31}]
chr1 GH01I172845 172845401 172845800 0.83 [{'connected_gene': 'ENSG00000224228', 'score': 18.04}, {'connected_gene': 'TNFSF4', 'score': 13.39}, {'connected_gene': 'LOC105371618', 'score': 0.44}, {'connected_gene': 'AIMP1P2', 'score': 0.26}]
chr1 GH01I173257 173257315 173259270 0.63 [{'connected_gene': 'ENSG00000224228', 'score': 9.62}, {'connected_gene': 'GC01M173270', 'score': 0.39}, {'connected_gene': 'TNFSF4', 'score': 0.23}, {'connected_gene': 'LOC100506023', 'score': 0.08}]
chr1 GH01I173268 173268635 173270964 0.92 [{'connected_gene': 'GC01M173270', 'score': 0.77}, {'connected_gene': 'TNFSF4', 'score': 0.21}, {'connected_gene': 'LOC100506023', 'score': 0.08}]
chr1 GH01I172754 172754025 172754396 0.44 [{'connected_gene': 'ENSG00000279061', 'score': 550.77}, {'connected_gene': 'TNFSF4', 'score': 12.58}, {'connected_gene': 'ENSG00000224228', 'score': 0.34}]
chr1 GH01I173189 173189415 173192743 1.34 [{'connected_gene': 'ENSG00000224228', 'score': 9.86}, {'connected_gene': 'ENSG00000226375', 'score': 4.98}, {'connected_gene': 'TNFSF4', 'score': 0.37}]
chr1 GH01I173192 173192944 173196514 1.33 [{'connected_gene': 'ENSG00000224228', 'score': 10.73}, {'connected_gene': 'ENSG00000226375', 'score': 5.54}, {'connected_gene': 'TNFSF4', 'score': 1.57}]
chr1 GH01I173175 173175706 173175959 0.2 [{'connected_gene': 'ENSG00000226375', 'score': 556.12}, {'connected_gene': 'TNFSF4', 'score': 0.29}]

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