PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000301286	[[4502203, 4504797], [4504872, 4504959], [4508779, 4508967], [4510457, 4513716], [4516628, 4516690], [4517565, 4517716]]	[[4504470, 4504797], [4504872, 4504959], [4508779, 4508967], [4510457, 4513716], [4516628, 4516690], [4517565, 4517716]]
NM_001080400	[[4502191, 4504797], [4504872, 4504959], [4508779, 4508967], [4510457, 4513716], [4516628, 4516690], [4517565, 4517716]]	[[4504470, 4504797], [4504872, 4504959], [4508779, 4508967], [4510457, 4513716], [4516628, 4516690], [4517565, 4517716]]

Promoter

Chrom	Start	End	Description
chr19	4512807	4512811	CAGE_peak_2_at_PLIN4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I004504	4504195	4505381	0.58	[{'connected_gene': 'UBXN6', 'score': 5.57}, {'connected_gene': 'PLIN4', 'score': 0.39}, {'connected_gene': 'GC19P004486', 'score': 0.37}]
chr19	GH19I004516	4516956	4520342	1.73	[{'connected_gene': 'PLIN4', 'score': 550.77}, {'connected_gene': 'CACTIN', 'score': 14.46}, {'connected_gene': 'PLIN5', 'score': 10.7}, {'connected_gene': 'CCDC94', 'score': 10.47}, {'connected_gene': 'CACTIN-AS1', 'score': 10.16}]
chr19	GH19I004503	4503603	4504120	0.43	[{'connected_gene': 'PLIN4', 'score': 0.39}, {'connected_gene': 'GC19P004486', 'score': 0.37}]
chr19	GH19I004513	4513076	4514314	0.43	[{'connected_gene': 'PLIN4', 'score': 0.77}, {'connected_gene': 'GC19P004486', 'score': 0.31}]
chr19	GH19I004534	4534429	4536000	1.8	[{'connected_gene': 'PLIN5', 'score': 563.47}, {'connected_gene': 'ENSG00000267385', 'score': 0.77}, {'connected_gene': 'PLIN4', 'score': 0.37}]
chr19	GH19I004531	4531609	4531758	1.04	[{'connected_gene': 'PLIN5', 'score': 0.77}, {'connected_gene': 'ENSG00000267385', 'score': 0.44}, {'connected_gene': 'PLIN4', 'score': 0.39}]
chr19	GH19I004510	4510312	4513031	0.43	[{'connected_gene': 'PLIN5', 'score': 7.07}, {'connected_gene': 'CHAF1A', 'score': 6.27}, {'connected_gene': 'PLIN4', 'score': 6.19}, {'connected_gene': 'UBXN6', 'score': 6.07}, {'connected_gene': 'ENSG00000267769', 'score': 5.17}, {'connected_gene': 'GC19P004486', 'score': 0.34}]
chr19	GH19I004505	4505919	4507375	0.83	[{'connected_gene': 'CHAF1A', 'score': 7.17}, {'connected_gene': 'UBXN6', 'score': 5.7}, {'connected_gene': 'PLIN4', 'score': 0.39}, {'connected_gene': 'GC19P004486', 'score': 0.37}]