PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000374279	[[114659045, 114659593], [114676884, 114677026], [114685128, 114685231], [114687056, 114687158], [114688663, 114688776], [114691779, 114691958], [114693550, 114693637], [114694449, 114694639], [114695106, 114697649]]	[[114659495, 114659593], [114676884, 114677026], [114685128, 114685231], [114687056, 114687158], [114688663, 114688776], [114691779, 114691958], [114693550, 114693637], [114694449, 114694639], [114695106, 114695277]]
ENST00000490110	[[114659480, 114659593], [114676884, 114677026], [114678038, 114678116], [114685128, 114685231], [114687056, 114687158], [114688663, 114688706]]	None
ENST00000495085	[[114659480, 114659593], [114676884, 114677026], [114685096, 114685231], [114687056, 114687158], [114688663, 114688776], [114691779, 114691946]]	None
ENST00000489355	[[114659456, 114659593], [114676884, 114677273]]	None
ENST00000474306	[[114691528, 114691958], [114693550, 114693588]]	None
NM_003358	[[114659045, 114659593], [114676884, 114677026], [114685128, 114685231], [114687056, 114687158], [114688663, 114688776], [114691779, 114691958], [114693550, 114693637], [114694449, 114694639], [114695106, 114697654]]	[[114659495, 114659593], [114676884, 114677026], [114685128, 114685231], [114687056, 114687158], [114688663, 114688776], [114691779, 114691958], [114693550, 114693637], [114694449, 114694639], [114695106, 114695277]]

Promoter

Chrom	Start	End	Description
chr9	114659084	114659102	CAGE_peak_1_at_UGCG_5end
chr9	114659336	114659458	CAGE_peak_2_at_UGCG_5end
chr9	114695499	114695529	CAGE_peak_4_at_UGCG_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I112376	112376964	112381725	2.07	[{'connected_gene': 'HSDL2', 'score': 595.2}, {'connected_gene': 'GC09M112376', 'score': 550.77}, {'connected_gene': 'PTBP3', 'score': 15.79}, {'connected_gene': 'PRPF4', 'score': 13.36}, {'connected_gene': 'UGCG', 'score': 11.07}, {'connected_gene': 'FKBP15', 'score': 11.05}, {'connected_gene': 'SUSD1', 'score': 6.4}, {'connected_gene': 'RPL32P22', 'score': 0.37}]
chr9	GH09I111923	111923908	111930976	1.21	[{'connected_gene': 'UGCG', 'score': 17.95}, {'connected_gene': 'GNG10', 'score': 7.19}, {'connected_gene': 'MIR4668', 'score': 0.77}]
chr9	GH09I111895	111895081	111905616	2.48	[{'connected_gene': 'UGCG', 'score': 550.77}, {'connected_gene': 'RNU6-1013P', 'score': 11.05}, {'connected_gene': 'GNG10', 'score': 6.87}, {'connected_gene': 'ENSG00000224067', 'score': 4.92}, {'connected_gene': 'C9orf84', 'score': 4.87}, {'connected_gene': 'PTGR1', 'score': 4.74}, {'connected_gene': 'MIR4668', 'score': 0.29}]
chr9	GH09I111942	111942522	111946384	1.09	[{'connected_gene': 'UGCG', 'score': 12.12}, {'connected_gene': 'RNU6-710P', 'score': 10.94}, {'connected_gene': 'RNU6-1013P', 'score': 10.79}, {'connected_gene': 'GNG10', 'score': 6.45}, {'connected_gene': 'DNAJC25', 'score': 4.84}, {'connected_gene': 'MIR4668', 'score': 0.39}]
chr9	GH09I111972	111972360	111976139	1.22	[{'connected_gene': 'UGCG', 'score': 12.27}, {'connected_gene': 'RNU6-710P', 'score': 12.19}, {'connected_gene': 'RNU6-1013P', 'score': 10.78}, {'connected_gene': 'MIR4668', 'score': 0.26}]
chr9	GH09I111906	111906577	111907744	0.43	[{'connected_gene': 'UGCG', 'score': 0.39}, {'connected_gene': 'MIR4668', 'score': 0.34}]
chr9	GH09I111919	111919745	111920174	0.52	[{'connected_gene': 'RPL32P22', 'score': 9.83}, {'connected_gene': 'GNG10', 'score': 5.67}, {'connected_gene': 'MIR4668', 'score': 0.39}, {'connected_gene': 'UGCG', 'score': 0.34}]
chr9	GH09I111876	111876788	111877218	0.2	[{'connected_gene': 'GNG10', 'score': 7.46}, {'connected_gene': 'UGCG', 'score': 0.37}, {'connected_gene': 'RNU6-1013P', 'score': 0.28}]
chr9	GH09I111866	111866887	111867816	1.15	[{'connected_gene': 'GNG10', 'score': 4.06}, {'connected_gene': 'RNU6-1013P', 'score': 0.31}, {'connected_gene': 'UGCG', 'score': 0.31}]
chr9	GH09I111921	111921831	111923505	0.46	[{'connected_gene': 'GNG10', 'score': 5.84}, {'connected_gene': 'MIR4668', 'score': 0.44}, {'connected_gene': 'UGCG', 'score': 0.31}]
chr9	GH09I111851	111851048	111852425	1.18	[{'connected_gene': 'PTGR1', 'score': 4.59}, {'connected_gene': 'GNG10', 'score': 4.23}, {'connected_gene': 'RNU6-1013P', 'score': 0.39}, {'connected_gene': 'UGCG', 'score': 0.25}]
chr9	GH09I111854	111854504	111855948	0.31	[{'connected_gene': 'C9orf84', 'score': 7.38}, {'connected_gene': 'PTGR1', 'score': 5.97}, {'connected_gene': 'GNG10', 'score': 4.96}, {'connected_gene': 'RNU6-1013P', 'score': 0.37}, {'connected_gene': 'UGCG', 'score': 0.26}]
chr9	GH09I111844	111844081	111844230	0.66	[{'connected_gene': 'C9orf84', 'score': 19.07}, {'connected_gene': 'ENSG00000224067', 'score': 11.74}, {'connected_gene': 'RNU6-1013P', 'score': 0.77}, {'connected_gene': 'UGCG', 'score': 0.23}]
chr9	GH09I112072	112072180	112076211	1.65	[{'connected_gene': 'C9orf84', 'score': 11.01}, {'connected_gene': 'ENSG00000224067', 'score': 11.01}, {'connected_gene': 'RNU6-1013P', 'score': 10.88}, {'connected_gene': 'SUSD1', 'score': 5.25}, {'connected_gene': 'UGCG', 'score': 3.98}, {'connected_gene': 'GNG10', 'score': 1.69}, {'connected_gene': 'PTGR1', 'score': 1.61}, {'connected_gene': 'ENSG00000259953', 'score': 0.28}, {'connected_gene': 'RNU6-855P', 'score': 0.21}]
chr9	GH09I112068	112068522	112071400	1.55	[{'connected_gene': 'RNU6-1013P', 'score': 10.88}, {'connected_gene': 'UGCG', 'score': 5.79}, {'connected_gene': 'GNG10', 'score': 3.7}, {'connected_gene': 'SUSD1', 'score': 2.36}, {'connected_gene': 'ENSG00000259953', 'score': 0.29}, {'connected_gene': 'RNU6-855P', 'score': 0.2}]
chr9	GH09I112064	112064418	112067709	1.52	[{'connected_gene': 'RNU6-1013P', 'score': 10.88}, {'connected_gene': 'ENSG00000259953', 'score': 5.42}, {'connected_gene': 'UGCG', 'score': 2.71}, {'connected_gene': 'RNU6-855P', 'score': 0.19}, {'connected_gene': 'SUSD1', 'score': 0.14}]
chr9	GH09I111913	111913601	111913800	0.51	[{'connected_gene': 'RNU6-1013P', 'score': 10.66}, {'connected_gene': 'UGCG', 'score': 0.37}, {'connected_gene': 'MIR4668', 'score': 0.37}]
chr9	GH09I111907	111907922	111909810	1.02	[{'connected_gene': 'RNU6-1013P', 'score': 11.12}, {'connected_gene': 'UGCG', 'score': 0.39}, {'connected_gene': 'MIR4668', 'score': 0.34}]
chr9	GH09I111868	111868581	111868730	0.38	[{'connected_gene': 'RNU6-1013P', 'score': 0.31}, {'connected_gene': 'UGCG', 'score': 0.31}]
chr9	GH09I111857	111857621	111857830	0.93	[{'connected_gene': 'RNU6-1013P', 'score': 0.37}, {'connected_gene': 'UGCG', 'score': 0.28}]
chr9	GH09I111910	111910607	111911871	0.68	[{'connected_gene': 'RNU6-1013P', 'score': 10.66}, {'connected_gene': 'GNG10', 'score': 5.46}, {'connected_gene': 'UGCG', 'score': 0.39}, {'connected_gene': 'MIR4668', 'score': 0.34}]
chr9	GH09I111914	111914113	111917990	1.2	[{'connected_gene': 'RNU6-1013P', 'score': 10.65}, {'connected_gene': 'GNG10', 'score': 7.42}, {'connected_gene': 'UGCG', 'score': 0.37}, {'connected_gene': 'MIR4668', 'score': 0.37}]
chr9	GH09I112048	112048302	112052690	1.46	[{'connected_gene': 'RNU6-710P', 'score': 10.59}, {'connected_gene': 'ENSG00000259953', 'score': 6.0}, {'connected_gene': 'UGCG', 'score': 2.51}, {'connected_gene': 'RNU6-855P', 'score': 0.17}, {'connected_gene': 'SUSD1', 'score': 0.13}]
chr9	GH09I111957	111957323	111963168	1.75	[{'connected_gene': 'RNU6-710P', 'score': 11.31}, {'connected_gene': 'ENSG00000224067', 'score': 10.85}, {'connected_gene': 'C9orf84', 'score': 10.85}, {'connected_gene': 'RNU6-1013P', 'score': 10.82}, {'connected_gene': 'GNG10', 'score': 7.07}, {'connected_gene': 'UGCG', 'score': 3.38}, {'connected_gene': 'MIR4668', 'score': 0.31}]
chr9	GH09I111888	111888645	111893314	1.3	[{'connected_gene': 'RNU6-710P', 'score': 11.68}, {'connected_gene': 'RNU6-1013P', 'score': 11.42}, {'connected_gene': 'GNG10', 'score': 8.61}, {'connected_gene': 'C9orf84', 'score': 5.09}, {'connected_gene': 'PTGR1', 'score': 4.39}, {'connected_gene': 'UGCG', 'score': 0.44}]
chr9	GH09I112010	112010081	112014534	1.56	[{'connected_gene': 'ENSG00000259953', 'score': 4.73}, {'connected_gene': 'SUSD1', 'score': 2.5}, {'connected_gene': 'UGCG', 'score': 1.79}, {'connected_gene': 'LOC105376220', 'score': 0.37}, {'connected_gene': 'RNU6-710P', 'score': 0.37}]
chr9	GH09I112749	112749502	112752250	2.26	[{'connected_gene': 'ENSG00000226609', 'score': 556.57}, {'connected_gene': 'SNX30', 'score': 550.77}, {'connected_gene': 'PRPF4', 'score': 13.37}, {'connected_gene': 'PTBP3', 'score': 12.12}, {'connected_gene': 'FKBP15', 'score': 11.07}, {'connected_gene': 'UGCG', 'score': 11.06}, {'connected_gene': 'ENSG00000271631', 'score': 5.09}, {'connected_gene': 'PIR49803', 'score': 0.13}]
chr9	GH09I112045	112045269	112048200	1.3	[{'connected_gene': 'ENSG00000259953', 'score': 7.09}, {'connected_gene': 'GNG10', 'score': 2.24}, {'connected_gene': 'UGCG', 'score': 2.14}, {'connected_gene': 'PTGR1', 'score': 1.33}, {'connected_gene': 'RNU6-855P', 'score': 0.16}, {'connected_gene': 'SUSD1', 'score': 0.13}]
chr9	GH09I111877	111877971	111878553	0.2	[{'connected_gene': 'ENSG00000224067', 'score': 6.15}, {'connected_gene': 'GNG10', 'score': 5.13}, {'connected_gene': 'UGCG', 'score': 0.37}, {'connected_gene': 'RNU6-1013P', 'score': 0.28}]