PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000309422	[[64002009, 64002365], [64002929, 64002972], [64003284, 64003481], [64003725, 64003799], [64004658, 64004694], [64004891, 64005127], [64005827, 64006259]]	[[64002305, 64002365], [64002929, 64002972], [64003284, 64003481], [64003725, 64003799], [64004658, 64004694], [64004891, 64005105]]
ENST00000426086	[[64002291, 64002365], [64002929, 64002972], [64003284, 64003481], [64003725, 64003799], [64004658, 64004694], [64004992, 64005127], [64005827, 64006247]]	[[64002305, 64002365], [64002929, 64002972], [64003284, 64003481], [64003725, 64003799], [64004658, 64004694], [64004992, 64005127], [64005827, 64005849]]
ENST00000543462	[[64004598, 64004694], [64004992, 64005127], [64005827, 64006259]]	None
ENST00000541681	[[64005007, 64005127], [64005268, 64005373]]	[[64005007, 64005105]]
NM_001243733	[[64002055, 64002365], [64002929, 64002972], [64003284, 64003481], [64003725, 64003799], [64004658, 64004694], [64004992, 64005127], [64005827, 64006736]]	[[64002305, 64002365], [64002929, 64002972], [64003284, 64003481], [64003725, 64003799], [64004658, 64004694], [64004992, 64005127], [64005827, 64005849]]
NM_003377	[[64002055, 64002365], [64002929, 64002972], [64003284, 64003481], [64003725, 64003799], [64004658, 64004694], [64004891, 64005127], [64005827, 64006736]]	[[64002305, 64002365], [64002929, 64002972], [64003284, 64003481], [64003725, 64003799], [64004658, 64004694], [64004891, 64005105]]

Promoter

Chrom	Start	End	Description
chr11	64001962	64002033	CAGE_peak_2_at_VEGFB_5end
chr11	64002041	64002119	CAGE_peak_1_at_VEGFB_5end
chr11	64002306	64002317	CAGE_peak_5_at_VEGFB_5end
chr11	64002335	64002342	CAGE_peak_8_at_VEGFB_5end
chr11	64004888	64004909	CAGE_peak_3_at_VEGFB_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I064108	64108150	64110350	0.38	[{'connected_gene': 'TRPT1', 'score': 23.0}, {'connected_gene': 'VEGFB', 'score': 10.48}, {'connected_gene': 'CCDC88B', 'score': 8.43}, {'connected_gene': 'PIR46997', 'score': 0.44}, {'connected_gene': 'ENSG00000256481', 'score': 0.31}, {'connected_gene': 'MACROD1', 'score': 0.22}, {'connected_gene': 'FLRT1', 'score': 0.19}]
chr11	GH11I064093	64093372	64095726	1.24	[{'connected_gene': 'PLCB3', 'score': 17.24}, {'connected_gene': 'SF1', 'score': 16.07}, {'connected_gene': 'ENSG00000256341', 'score': 11.89}, {'connected_gene': 'ZFPL1', 'score': 10.37}, {'connected_gene': 'NAALADL1', 'score': 10.36}, {'connected_gene': 'TRPT1', 'score': 9.42}, {'connected_gene': 'VEGFB', 'score': 6.92}, {'connected_gene': 'NRXN2', 'score': 4.55}, {'connected_gene': 'FKBP2', 'score': 4.31}, {'connected_gene': 'ENSG00000256481', 'score': 0.39}, {'connected_gene': 'PIR46997', 'score': 0.34}, {'connected_gene': 'FLRT1', 'score': 0.22}, {'connected_gene': 'ENSG00000256824', 'score': 0.22}, {'connected_gene': 'MACROD1', 'score': 0.19}]
chr11	GH11I064097	64097753	64099253	0.79	[{'connected_gene': 'TRMT112', 'score': 14.36}, {'connected_gene': 'VEGFB', 'score': 9.07}, {'connected_gene': 'CCDC88B', 'score': 8.75}, {'connected_gene': 'ENSG00000256481', 'score': 0.37}, {'connected_gene': 'PIR46997', 'score': 0.37}, {'connected_gene': 'FLRT1', 'score': 0.21}, {'connected_gene': 'ENSG00000256824', 'score': 0.21}, {'connected_gene': 'MACROD1', 'score': 0.2}]
chr11	GH11I064237	64237035	64253602	2.32	[{'connected_gene': 'PPP1R14B', 'score': 572.68}, {'connected_gene': 'FKBP2', 'score': 550.77}, {'connected_gene': 'LOC105369340', 'score': 550.77}, {'connected_gene': 'PLCB3', 'score': 550.44}, {'connected_gene': 'TRPT1', 'score': 23.86}, {'connected_gene': 'LOC102723878', 'score': 22.35}, {'connected_gene': 'VEGFB', 'score': 19.71}, {'connected_gene': 'TRMT112', 'score': 17.45}, {'connected_gene': 'FERMT3', 'score': 12.7}, {'connected_gene': 'GPR137', 'score': 11.63}, {'connected_gene': 'BAD', 'score': 11.57}, {'connected_gene': 'ENSG00000257086', 'score': 6.66}, {'connected_gene': 'ENSG00000256116', 'score': 5.79}, {'connected_gene': 'FLRT1', 'score': 5.1}, {'connected_gene': 'PIR60417', 'score': 0.44}]
chr11	GH11I064036	64036000	64037109	1.37	[{'connected_gene': 'FLRT1', 'score': 550.77}, {'connected_gene': 'ENSG00000256824', 'score': 550.77}, {'connected_gene': 'VEGFB', 'score': 4.76}, {'connected_gene': 'PIR44183', 'score': 0.37}, {'connected_gene': 'MACROD1', 'score': 0.13}]
chr11	GH11I064074	64074832	64077281	0.46	[{'connected_gene': 'FLRT1', 'score': 11.95}, {'connected_gene': 'ENSG00000256341', 'score': 11.13}, {'connected_gene': 'VEGFB', 'score': 7.14}, {'connected_gene': 'ENSG00000257086', 'score': 6.48}, {'connected_gene': 'ENSG00000256481', 'score': 0.44}, {'connected_gene': 'PIR44183', 'score': 0.34}, {'connected_gene': 'ENSG00000256824', 'score': 0.26}, {'connected_gene': 'MACROD1', 'score': 0.16}]
chr11	GH11I064232	64232929	64232971	0.31	[{'connected_gene': 'PIR49361', 'score': 550.77}, {'connected_gene': 'VEGFB', 'score': 550.77}, {'connected_gene': 'ENSG00000256116', 'score': 550.77}, {'connected_gene': 'TRPT1', 'score': 17.64}, {'connected_gene': 'DNAJC4', 'score': 0.77}]
chr11	GH11I064233	64233001	64233200	0.38	[{'connected_gene': 'PIR49361', 'score': 550.77}, {'connected_gene': 'VEGFB', 'score': 550.77}, {'connected_gene': 'ENSG00000256116', 'score': 550.77}, {'connected_gene': 'TRPT1', 'score': 17.65}, {'connected_gene': 'DNAJC4', 'score': 0.77}]
chr11	GH11I064262	64262404	64264109	0.43	[{'connected_gene': 'GC11P064262', 'score': 550.77}, {'connected_gene': 'VEGFB', 'score': 17.12}, {'connected_gene': 'GPR137', 'score': 0.44}, {'connected_gene': 'PLCB3', 'score': 0.39}]
chr11	GH11I064234	64233545	64236245	2.1	[{'connected_gene': 'PIR49361', 'score': 550.77}, {'connected_gene': 'VEGFB', 'score': 550.77}, {'connected_gene': 'ENSG00000256116', 'score': 550.77}, {'connected_gene': 'DNAJC4', 'score': 0.77}, {'connected_gene': 'PIR60417', 'score': 0.77}]
chr11	GH11I064088	64088489	64088658	0.63	[{'connected_gene': 'ENSG00000256341', 'score': 11.75}, {'connected_gene': 'VEGFB', 'score': 4.78}, {'connected_gene': 'ENSG00000256481', 'score': 0.44}, {'connected_gene': 'PIR46997', 'score': 0.31}, {'connected_gene': 'FLRT1', 'score': 0.23}, {'connected_gene': 'ENSG00000256824', 'score': 0.23}, {'connected_gene': 'MACROD1', 'score': 0.18}]
chr11	GH11I064183	64183481	64187865	2.33	[{'connected_gene': 'GC11M064182', 'score': 550.77}, {'connected_gene': 'STIP1', 'score': 550.77}, {'connected_gene': 'TRPT1', 'score': 24.67}, {'connected_gene': 'ENSG00000257086', 'score': 21.53}, {'connected_gene': 'IMMP1LP1', 'score': 13.74}, {'connected_gene': 'FERMT3', 'score': 13.36}, {'connected_gene': 'SF1', 'score': 11.49}, {'connected_gene': 'C11orf95', 'score': 11.35}, {'connected_gene': 'ZNHIT2', 'score': 11.22}, {'connected_gene': 'PLCB3', 'score': 10.84}, {'connected_gene': 'ENSG00000256341', 'score': 10.34}, {'connected_gene': 'DNAJC4', 'score': 9.9}, {'connected_gene': 'NAA40', 'score': 9.75}, {'connected_gene': 'ZFPL1', 'score': 9.73}, {'connected_gene': 'VEGFB', 'score': 7.97}, {'connected_gene': 'ENSG00000256116', 'score': 5.65}, {'connected_gene': 'OTUB1', 'score': 2.03}, {'connected_gene': 'CCDC88B', 'score': 1.86}]