PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000404666	[[17720392, 17720669], [17773336, 17773503], [17830676, 17830892], [17836463, 17837345]]	[[17773341, 17773503], [17830676, 17830892], [17836463, 17836661]]
ENST00000457525	[[17721233, 17721449], [17773336, 17773503], [17830676, 17830869]]	[[17773341, 17773503], [17830676, 17830869]]
ENST00000295156	[[17721919, 17722185], [17773336, 17773503], [17830676, 17830892], [17836463, 17837706]]	[[17773341, 17773503], [17830676, 17830892], [17836463, 17836661]]
ENST00000451533	[[17721962, 17722185], [17727269, 17727290], [17773336, 17773503], [17830676, 17830827]]	[[17773341, 17773503], [17830676, 17830827]]
ENST00000406397	[[17722426, 17722946], [17773336, 17773503], [17830676, 17830892], [17836463, 17838285]]	[[17773341, 17773503], [17830676, 17830892], [17836463, 17836661]]
ENST00000483921	[[17721973, 17722185], [17727269, 17727290], [17748646, 17748974]]	None
NM_003385	[[17721806, 17722185], [17773336, 17773503], [17830676, 17830892], [17836463, 17837706]]	[[17773341, 17773503], [17830676, 17830892], [17836463, 17836661]]

Promoter

Chrom	Start	End	Description
chr2	17721230	17721255	CAGE_peak_4_at_VSNL1_5end
chr2	17721922	17721933	CAGE_peak_3_at_VSNL1_5end
chr2	17721937	17721990	CAGE_peak_1_at_VSNL1_5end
chr2	17722000	17722011	CAGE_peak_2_at_VSNL1_5end
chr2	17773341	17773362	CAGE_peak_6_at_VSNL1_5end
chr2	17773375	17773392	CAGE_peak_9_at_VSNL1_5end
chr2	17773405	17773425	CAGE_peak_8_at_VSNL1_5end
chr2	17773428	17773449	CAGE_peak_7_at_VSNL1_5end
chr2	17773459	17773475	CAGE_peak_5_at_VSNL1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I017537	17537913	17545179	2.6	[{'connected_gene': 'VSNL1', 'score': 558.44}, {'connected_gene': 'RAD51AP2', 'score': 16.75}, {'connected_gene': 'GEN1', 'score': 6.71}, {'connected_gene': 'MSGN1', 'score': 2.18}, {'connected_gene': 'GC02M017549', 'score': 0.44}]
chr2	GH02I017609	17609103	17609604	0.2	[{'connected_gene': 'VSNL1', 'score': 10.64}, {'connected_gene': 'GEN1', 'score': 9.85}, {'connected_gene': 'SMC6', 'score': 4.5}, {'connected_gene': 'PIR36041', 'score': 0.44}, {'connected_gene': 'GC02M017549', 'score': 0.22}]
chr2	GH02I017584	17584178	17585987	0.54	[{'connected_gene': 'VSNL1', 'score': 11.19}, {'connected_gene': 'GEN1', 'score': 8.1}, {'connected_gene': 'RAD51AP2', 'score': 5.29}, {'connected_gene': 'PIR36041', 'score': 0.29}, {'connected_gene': 'GC02M017549', 'score': 0.29}]
chr2	GH02I017386	17386664	17389311	0.2	[{'connected_gene': 'VSNL1', 'score': 7.2}, {'connected_gene': 'GEN1', 'score': 4.55}, {'connected_gene': 'PSMC1P10', 'score': 0.77}, {'connected_gene': 'LOC105373447', 'score': 0.39}, {'connected_gene': 'GC02P017432', 'score': 0.26}]
chr2	GH02I017427	17427953	17429896	0.31	[{'connected_gene': 'VSNL1', 'score': 10.22}, {'connected_gene': 'GEN1', 'score': 7.09}, {'connected_gene': 'GC02P017432', 'score': 0.77}, {'connected_gene': 'PSMC1P10', 'score': 0.26}]
chr2	GH02I017587	17587526	17595519	1.61	[{'connected_gene': 'VSNL1', 'score': 17.94}, {'connected_gene': 'GEN1', 'score': 9.15}, {'connected_gene': 'MSGN1', 'score': 2.48}, {'connected_gene': 'PIR36041', 'score': 0.34}, {'connected_gene': 'GC02M017549', 'score': 0.26}]
chr2	GH02I017506	17506751	17507483	0.54	[{'connected_gene': 'VSNL1', 'score': 11.51}, {'connected_gene': 'GEN1', 'score': 7.13}, {'connected_gene': 'LOC101928149', 'score': 0.44}, {'connected_gene': 'GC02P017464', 'score': 0.26}]
chr2	GH02I017578	17578113	17580703	1.56	[{'connected_gene': 'VSNL1', 'score': 566.78}, {'connected_gene': 'GEN1', 'score': 5.84}, {'connected_gene': 'GC02M017549', 'score': 0.31}, {'connected_gene': 'PIR36041', 'score': 0.28}]
chr2	GH02I017577	17577491	17577977	0.31	[{'connected_gene': 'VSNL1', 'score': 10.86}, {'connected_gene': 'GEN1', 'score': 5.85}, {'connected_gene': 'GC02M017549', 'score': 0.31}, {'connected_gene': 'PIR36041', 'score': 0.28}]
chr2	GH02I017603	17603750	17604672	0.38	[{'connected_gene': 'VSNL1', 'score': 10.65}, {'connected_gene': 'GEN1', 'score': 6.31}, {'connected_gene': 'PIR36041', 'score': 0.39}, {'connected_gene': 'GC02M017549', 'score': 0.23}]
chr2	GH02I017581	17581639	17582527	0.31	[{'connected_gene': 'VSNL1', 'score': 11.42}, {'connected_gene': 'GEN1', 'score': 5.84}, {'connected_gene': 'PIR36041', 'score': 0.29}, {'connected_gene': 'GC02M017549', 'score': 0.29}]
chr2	GH02I017573	17573552	17574330	0.43	[{'connected_gene': 'VSNL1', 'score': 10.84}, {'connected_gene': 'GEN1', 'score': 6.36}, {'connected_gene': 'GC02M017549', 'score': 0.34}, {'connected_gene': 'PIR36041', 'score': 0.26}]
chr2	GH02I017619	17619649	17622252	0.74	[{'connected_gene': 'VSNL1', 'score': 15.35}, {'connected_gene': 'GEN1', 'score': 9.41}, {'connected_gene': 'PIR36041', 'score': 0.77}]
chr2	GH02I017628	17628528	17629396	0.38	[{'connected_gene': 'VSNL1', 'score': 15.7}, {'connected_gene': 'GEN1', 'score': 9.7}, {'connected_gene': 'PIR36041', 'score': 0.39}]
chr2	GH02I017352	17352681	17354342	0.31	[{'connected_gene': 'VSNL1', 'score': 4.81}, {'connected_gene': 'PIR41459', 'score': 0.44}, {'connected_gene': 'LOC105373447', 'score': 0.34}]
chr2	GH02I017599	17599714	17599863	0.51	[{'connected_gene': 'VSNL1', 'score': 9.6}, {'connected_gene': 'PIR36041', 'score': 0.37}, {'connected_gene': 'GC02M017549', 'score': 0.25}]
chr2	GH02I017642	17642590	17646632	1.18	[{'connected_gene': 'GEN1', 'score': 14.65}, {'connected_gene': 'VSNL1', 'score': 10.27}, {'connected_gene': 'SMC6', 'score': 10.07}, {'connected_gene': 'PIR36041', 'score': 0.31}]
chr2	GH02I017803	17803706	17805390	1.09	[{'connected_gene': 'GEN1', 'score': 27.83}, {'connected_gene': 'VSNL1', 'score': 5.06}, {'connected_gene': 'LOC105373449', 'score': 0.77}, {'connected_gene': 'MSGN1', 'score': 0.39}]
chr2	GH02I017557	17557040	17558282	0.6	[{'connected_gene': 'GEN1', 'score': 6.57}, {'connected_gene': 'VSNL1', 'score': 6.34}, {'connected_gene': 'GC02M017549', 'score': 0.44}, {'connected_gene': 'PIR36041', 'score': 0.22}]
chr2	GH02I017635	17635154	17635303	0.31	[{'connected_gene': 'PIR36041', 'score': 0.37}, {'connected_gene': 'VSNL1', 'score': 0.15}, {'connected_gene': 'GEN1', 'score': 0.13}]
chr2	GH02I017615	17615446	17616897	0.69	[{'connected_gene': 'PIR36041', 'score': 550.77}, {'connected_gene': 'VSNL1', 'score': 10.4}, {'connected_gene': 'GC02M017549', 'score': 0.21}]