PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000343933	[[100883256, 100887187], [100888830, 100889105], [100890451, 100890542], [100890888, 100891001], [100892075, 100892172], [100893236, 100893341], [100894466, 100894583], [100895319, 100895499], [100897087, 100897237], [100899853, 100899970], [100919741, 100919942], [100934908, 100935166]]	[[100887055, 100887187], [100888830, 100889105], [100890451, 100890542], [100890888, 100891001], [100892075, 100892172], [100893236, 100893341], [100894466, 100894583], [100895319, 100895499], [100897087, 100897237], [100899853, 100899970], [100919741, 100919942]]
ENST00000375077	[[100883256, 100887187], [100888830, 100889105], [100890451, 100890542], [100890888, 100891001], [100892075, 100892172], [100893236, 100893341], [100894466, 100894583], [100895319, 100895499], [100897087, 100897237], [100899853, 100899970], [100919741, 100919942], [100954840, 100954922]]	[[100887055, 100887187], [100888830, 100889105], [100890451, 100890542], [100890888, 100891001], [100892075, 100892172], [100893236, 100893341], [100894466, 100894583], [100895319, 100895499], [100897087, 100897237], [100899853, 100899970], [100919741, 100919942]]
NM_003389	[[100883256, 100887187], [100888830, 100889105], [100890451, 100890542], [100890888, 100891001], [100892075, 100892172], [100893236, 100893341], [100894466, 100894583], [100895319, 100895499], [100897087, 100897237], [100899853, 100899970], [100919741, 100919942], [100934908, 100935174]]	[[100887055, 100887187], [100888830, 100889105], [100890451, 100890542], [100890888, 100891001], [100892075, 100892172], [100893236, 100893341], [100894466, 100894583], [100895319, 100895499], [100897087, 100897237], [100899853, 100899970], [100919741, 100919942]]
NM_052820	[[100883256, 100887187], [100888830, 100889105], [100890451, 100890542], [100890888, 100891001], [100892075, 100892172], [100893236, 100893341], [100894466, 100894583], [100895319, 100895499], [100897087, 100897237], [100899853, 100899970], [100919741, 100919942], [100954840, 100954956]]	[[100887055, 100887187], [100888830, 100889105], [100890451, 100890542], [100890888, 100891001], [100892075, 100892172], [100893236, 100893341], [100894466, 100894583], [100895319, 100895499], [100897087, 100897237], [100899853, 100899970], [100919741, 100919942]]

Promoter

Chrom	Start	End	Description
chr9	100935043	100935050	CAGE_peak_7_at_CORO2A_5end
chr9	100954910	100954953	CAGE_peak_1_at_CORO2A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I098141	98141738	98148136	1.59	[{'connected_gene': 'TRIM14', 'score': 12.04}, {'connected_gene': 'CORO2A', 'score': 11.75}, {'connected_gene': 'TBC1D2', 'score': 10.9}, {'connected_gene': 'NANS', 'score': 4.18}, {'connected_gene': 'PIR60537', 'score': 0.44}]
chr9	GH09I098149	98149445	98151313	1.05	[{'connected_gene': 'TRIM14', 'score': 12.02}, {'connected_gene': 'CORO2A', 'score': 11.77}, {'connected_gene': 'TBC1D2', 'score': 10.91}, {'connected_gene': 'PIR60537', 'score': 0.39}]
chr9	GH09I098070	98070871	98076600	1.29	[{'connected_gene': 'TRIM14', 'score': 20.43}, {'connected_gene': 'TBC1D2', 'score': 11.89}, {'connected_gene': 'RNU6-918P', 'score': 11.46}, {'connected_gene': 'CORO2A', 'score': 11.43}, {'connected_gene': 'TSTD2', 'score': 10.7}, {'connected_gene': 'HEMGN', 'score': 10.56}, {'connected_gene': 'NANS', 'score': 9.03}, {'connected_gene': 'PIR35853', 'score': 0.39}, {'connected_gene': 'GC09M098254', 'score': 0.39}, {'connected_gene': 'GC09M098251', 'score': 0.39}]
chr9	GH09I098117	98117444	98123006	2.54	[{'connected_gene': 'TRIM14', 'score': 559.71}, {'connected_gene': 'NCBP1', 'score': 56.4}, {'connected_gene': 'ZNF322P1', 'score': 38.92}, {'connected_gene': 'TSTD2', 'score': 38.4}, {'connected_gene': 'ENSG00000254633', 'score': 26.39}, {'connected_gene': 'CORO2A', 'score': 22.74}, {'connected_gene': 'ANKS6', 'score': 21.53}, {'connected_gene': 'CCDC180', 'score': 18.62}, {'connected_gene': 'LOC105376171', 'score': 12.1}, {'connected_gene': 'XPA', 'score': 11.9}, {'connected_gene': 'TBC1D2', 'score': 10.26}, {'connected_gene': 'TRMO', 'score': 5.09}, {'connected_gene': 'FOXE1', 'score': 5.03}, {'connected_gene': 'HEMGN', 'score': 1.26}, {'connected_gene': 'PIR36587', 'score': 0.39}]
chr9	GH09I098263	98263800	98264200	1.01	[{'connected_gene': 'CORO2A', 'score': 22.53}, {'connected_gene': 'TBC1D2', 'score': 17.09}, {'connected_gene': 'TRIM14', 'score': 11.02}, {'connected_gene': 'RNU6-918P', 'score': 10.32}, {'connected_gene': 'GC09M098492', 'score': 0.07}]
chr9	GH09I098128	98128629	98130075	1.09	[{'connected_gene': 'CORO2A', 'score': 11.85}, {'connected_gene': 'TBC1D2', 'score': 4.52}, {'connected_gene': 'PIR36587', 'score': 0.77}, {'connected_gene': 'TRIM14', 'score': 0.44}]
chr9	GH09I098187	98187795	98193983	2.2	[{'connected_gene': 'CORO2A', 'score': 567.71}, {'connected_gene': 'TBC1D2', 'score': 27.41}, {'connected_gene': 'TRIM14', 'score': 11.49}, {'connected_gene': 'PIR60537', 'score': 0.22}]
chr9	GH09I098162	98162319	98165617	0.72	[{'connected_gene': 'CORO2A', 'score': 18.79}, {'connected_gene': 'TBC1D2', 'score': 18.27}, {'connected_gene': 'XPA', 'score': 13.96}, {'connected_gene': 'ZNF322P1', 'score': 12.9}, {'connected_gene': 'TRIM14', 'score': 11.9}, {'connected_gene': 'TSTD2', 'score': 11.72}, {'connected_gene': 'PIR60537', 'score': 0.31}]
chr9	GH09I098240	98240298	98242537	1.52	[{'connected_gene': 'TBC1D2', 'score': 41.35}, {'connected_gene': 'TRIM14', 'score': 10.15}, {'connected_gene': 'CORO2A', 'score': 4.52}, {'connected_gene': 'NANS', 'score': 3.34}, {'connected_gene': 'TRMO', 'score': 2.13}, {'connected_gene': 'LOC100131625', 'score': 0.44}]
chr9	GH09I098214	98214790	98217046	0.8	[{'connected_gene': 'TBC1D2', 'score': 30.24}, {'connected_gene': 'TRIM14', 'score': 11.42}, {'connected_gene': 'CORO2A', 'score': 6.2}, {'connected_gene': 'MIR6854', 'score': 0.39}]
chr9	GH09I098205	98205339	98206200	1.16	[{'connected_gene': 'TBC1D2', 'score': 18.69}, {'connected_gene': 'TRIM14', 'score': 11.15}, {'connected_gene': 'CORO2A', 'score': 8.16}, {'connected_gene': 'MIR6854', 'score': 0.34}]
chr9	GH09I098236	98236171	98237997	0.72	[{'connected_gene': 'TBC1D2', 'score': 32.13}, {'connected_gene': 'TRIM14', 'score': 10.15}, {'connected_gene': 'CORO2A', 'score': 7.06}, {'connected_gene': 'LOC100131625', 'score': 0.77}]
chr9	GH09I098112	98112601	98113600	0.51	[{'connected_gene': 'TBC1D2', 'score': 10.73}, {'connected_gene': 'TRIM14', 'score': 6.35}, {'connected_gene': 'CORO2A', 'score': 6.05}, {'connected_gene': 'ENSG00000274011', 'score': 0.77}, {'connected_gene': 'PIR57415', 'score': 0.31}, {'connected_gene': 'GC09M098247', 'score': 0.31}]
chr9	GH09I098180	98180023	98186209	1.35	[{'connected_gene': 'TBC1D2', 'score': 24.28}, {'connected_gene': 'TRIM14', 'score': 11.15}, {'connected_gene': 'CORO2A', 'score': 10.19}, {'connected_gene': 'PIR60537', 'score': 0.25}]
chr9	GH09I098076	98076619	98076828	0.4	[{'connected_gene': 'TBC1D2', 'score': 11.89}, {'connected_gene': 'TRIM14', 'score': 11.56}, {'connected_gene': 'RNU6-918P', 'score': 11.46}, {'connected_gene': 'CORO2A', 'score': 11.43}, {'connected_gene': 'HEMGN', 'score': 10.55}, {'connected_gene': 'GC09M098254', 'score': 0.44}, {'connected_gene': 'GC09M098251', 'score': 0.44}, {'connected_gene': 'PIR35853', 'score': 0.44}, {'connected_gene': 'NANS', 'score': 0.34}]
chr9	GH09I098078	98078833	98079216	0.75	[{'connected_gene': 'TBC1D2', 'score': 11.89}, {'connected_gene': 'TRIM14', 'score': 11.56}, {'connected_gene': 'RNU6-918P', 'score': 11.45}, {'connected_gene': 'CORO2A', 'score': 11.44}, {'connected_gene': 'HEMGN', 'score': 10.55}, {'connected_gene': 'TRMO', 'score': 1.75}, {'connected_gene': 'PIR35853', 'score': 0.44}, {'connected_gene': 'GC09M098254', 'score': 0.44}, {'connected_gene': 'GC09M098251', 'score': 0.44}, {'connected_gene': 'NANS', 'score': 0.34}]
chr9	GH09I098261	98261989	98263756	0.77	[{'connected_gene': 'TBC1D2', 'score': 17.09}, {'connected_gene': 'CORO2A', 'score': 15.16}, {'connected_gene': 'TRIM14', 'score': 11.02}, {'connected_gene': 'RNU6-918P', 'score': 10.32}, {'connected_gene': 'GC09M098492', 'score': 0.07}]
chr9	GH09I098218	98218565	98220987	1.14	[{'connected_gene': 'TBC1D2', 'score': 27.3}, {'connected_gene': 'CORO2A', 'score': 18.71}, {'connected_gene': 'TRIM14', 'score': 11.61}, {'connected_gene': 'MIR6854', 'score': 0.44}]
chr9	GH09I098246	98246325	98257283	2.85	[{'connected_gene': 'TBC1D2', 'score': 593.93}, {'connected_gene': 'CORO2A', 'score': 10.2}, {'connected_gene': 'TGFBR1', 'score': 9.98}, {'connected_gene': 'NANS', 'score': 5.49}, {'connected_gene': 'TRMO', 'score': 3.94}, {'connected_gene': 'LOC100131625', 'score': 0.37}]
chr9	GH09I098167	98167543	98170457	1.54	[{'connected_gene': 'TBC1D2', 'score': 6.62}, {'connected_gene': 'CORO2A', 'score': 6.07}, {'connected_gene': 'TRMO', 'score': 2.96}, {'connected_gene': 'PIR60537', 'score': 0.29}]
chr9	GH09I098280	98280699	98280928	0.8	[{'connected_gene': 'TBC1D2', 'score': 11.4}, {'connected_gene': 'CORO2A', 'score': 10.87}, {'connected_gene': 'RNU6-918P', 'score': 10.38}, {'connected_gene': 'TRIM14', 'score': 10.34}, {'connected_gene': 'GC09M098492', 'score': 0.08}]
chr9	GH09I098174	98174230	98179224	1.3	[{'connected_gene': 'TBC1D2', 'score': 10.75}, {'connected_gene': 'CORO2A', 'score': 8.25}, {'connected_gene': 'PIR60537', 'score': 0.26}]
chr9	GH09I098270	98270283	98270739	0.31	[{'connected_gene': 'TBC1D2', 'score': 14.51}, {'connected_gene': 'CORO2A', 'score': 12.34}, {'connected_gene': 'GC09M098492', 'score': 0.07}]
chr9	GH09I098172	98172679	98172928	0.99	[{'connected_gene': 'TBC1D2', 'score': 5.96}, {'connected_gene': 'CORO2A', 'score': 0.37}, {'connected_gene': 'PIR60537', 'score': 0.28}]
chr9	GH09I097801	97801873	97804234	1.54	[{'connected_gene': 'FOXE1', 'score': 20.77}, {'connected_gene': 'NUTM2G', 'score': 11.88}, {'connected_gene': 'CORO2A', 'score': 1.29}, {'connected_gene': 'PTCSC2', 'score': 0.23}, {'connected_gene': 'ENSG00000260677', 'score': 0.22}]
chr9	GH09I098221	98221005	98235773	1.72	[{'connected_gene': 'MIR6854', 'score': 550.77}, {'connected_gene': 'TBC1D2', 'score': 45.45}, {'connected_gene': 'CORO2A', 'score': 17.67}, {'connected_gene': 'NCBP1', 'score': 14.33}, {'connected_gene': 'TSTD2', 'score': 12.87}, {'connected_gene': 'TRIM14', 'score': 10.78}, {'connected_gene': 'ENSG00000236896', 'score': 10.71}, {'connected_gene': 'LOC100131625', 'score': 0.44}]
chr9	GH09I098158	98158439	98158588	1.05	[{'connected_gene': 'PIR60537', 'score': 0.34}, {'connected_gene': 'CORO2A', 'score': 0.29}]
chr9	GH09I098134	98134539	98136618	0.49	[{'connected_gene': 'PIR60537', 'score': 550.77}, {'connected_gene': 'CORO2A', 'score': 4.66}, {'connected_gene': 'PIR36587', 'score': 0.77}]
chr9	GH09I098156	98156626	98157699	0.31	[{'connected_gene': 'PIR60537', 'score': 0.34}, {'connected_gene': 'CORO2A', 'score': 0.28}]
chr9	GH09I098154	98154819	98154948	0.57	[{'connected_gene': 'PIR60537', 'score': 0.37}, {'connected_gene': 'CORO2A', 'score': 0.28}]