PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000301061	[[49359122, 49360336], [49361728, 49362102], [49363871, 49364134], [49364238, 49364352], [49365237, 49365546]]	[[49359877, 49360336], [49361728, 49362102], [49363871, 49364134], [49364238, 49364312]]
ENST00000407467	[[49359187, 49360336], [49361728, 49361789], [49361931, 49362102], [49363871, 49364134], [49364238, 49364352], [49365237, 49365281]]	[[49360329, 49360336], [49361728, 49361789], [49361931, 49362102], [49363871, 49364134], [49364238, 49364312]]
ENST00000403957	[[49359338, 49360336], [49361728, 49361789], [49361985, 49362102], [49363871, 49364134], [49364238, 49364352], [49365237, 49365501]]	[[49360329, 49360336], [49361728, 49361789], [49361985, 49362102], [49363871, 49364134], [49364238, 49364312]]
ENST00000413630	[[49362078, 49362102], [49362892, 49362927], [49363871, 49364134], [49364238, 49364539]]	[[49362078, 49362102], [49362892, 49362927], [49363871, 49364134], [49364238, 49364312]]
ENST00000475740	[[49363902, 49364134], [49364238, 49364435]]	None
ENST00000420388	[[49363902, 49364134], [49364238, 49364352], [49364459, 49364672]]	[[49363902, 49364134], [49364238, 49364312]]
NM_003394	[[49359122, 49360336], [49361728, 49362102], [49363871, 49364134], [49364238, 49364352], [49365237, 49365641]]	[[49359877, 49360336], [49361728, 49362102], [49363871, 49364134], [49364238, 49364312]]

Promoter

Chrom	Start	End	Description
chr12	49365510	49365525	CAGE_peak_2_at_WNT10B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I048917	48917297	48919211	0.58	[{'connected_gene': 'CCDC65', 'score': 14.82}, {'connected_gene': 'WNT10B', 'score': 6.92}, {'connected_gene': 'FKBP11', 'score': 0.44}, {'connected_gene': 'ENSG00000272822', 'score': 0.28}]
chr12	GH12I048965	48965050	48965751	0.56	[{'connected_gene': 'CCDC65', 'score': 14.5}, {'connected_gene': 'GC12P048969', 'score': 0.77}, {'connected_gene': 'ARF3', 'score': 0.44}, {'connected_gene': 'WNT10B', 'score': 0.44}]
chr12	GH12I048903	48903058	48904665	1.9	[{'connected_gene': 'CCDC65', 'score': 565.07}, {'connected_gene': 'RPL32P27', 'score': 550.77}, {'connected_gene': 'DDX23', 'score': 49.22}, {'connected_gene': 'KMT2D', 'score': 43.69}, {'connected_gene': 'LMBR1L', 'score': 43.38}, {'connected_gene': 'BCDIN3D', 'score': 38.92}, {'connected_gene': 'SENP1', 'score': 38.76}, {'connected_gene': 'KANSL2', 'score': 36.56}, {'connected_gene': 'LOC390314', 'score': 35.81}, {'connected_gene': 'CCNT1', 'score': 34.87}, {'connected_gene': 'PRPF40B', 'score': 31.39}, {'connected_gene': 'BCDIN3D-AS1', 'score': 24.54}, {'connected_gene': 'CCDC184', 'score': 23.54}, {'connected_gene': 'ENSG00000257964', 'score': 21.18}, {'connected_gene': 'LOC100422296', 'score': 18.54}, {'connected_gene': 'LOC101927267', 'score': 18.23}, {'connected_gene': 'FAM186B', 'score': 15.8}, {'connected_gene': 'LOC105369760', 'score': 11.81}, {'connected_gene': 'LOC102725258', 'score': 11.2}, {'connected_gene': 'RPL37P19', 'score': 11.11}, {'connected_gene': 'FKBP11', 'score': 10.5}, {'connected_gene': 'DHH', 'score': 9.79}, {'connected_gene': 'OR8T1P', 'score': 9.78}, {'connected_gene': 'WNT10B', 'score': 6.88}, {'connected_gene': 'ENSG00000272822', 'score': 0.23}]
chr12	GH12I048932	48932329	48935750	0.49	[{'connected_gene': 'WNT10B', 'score': 18.52}, {'connected_gene': 'CCDC65', 'score': 14.63}, {'connected_gene': 'ARF3', 'score': 12.01}, {'connected_gene': 'WNT1', 'score': 11.61}, {'connected_gene': 'RNU6-940P', 'score': 11.61}, {'connected_gene': 'FKBP11', 'score': 10.96}, {'connected_gene': 'GC12M048929', 'score': 0.44}, {'connected_gene': 'ENSG00000255863', 'score': 0.44}, {'connected_gene': 'ENSG00000272822', 'score': 0.34}]
chr12	GH12I048967	48967940	48972130	1.6	[{'connected_gene': 'WNT10B', 'score': 550.77}, {'connected_gene': 'GC12P048969', 'score': 550.77}, {'connected_gene': 'FKBP11', 'score': 26.33}, {'connected_gene': 'CCDC65', 'score': 10.65}]
chr12	GH12I048955	48955058	48955207	0.38	[{'connected_gene': 'WNT10B', 'score': 10.5}, {'connected_gene': 'ARF3', 'score': 0.77}, {'connected_gene': 'ENSG00000272822', 'score': 0.77}, {'connected_gene': 'ENSG00000255863', 'score': 0.37}]
chr12	GH12I048977	48977196	48982261	1.6	[{'connected_gene': 'WNT1', 'score': 550.77}, {'connected_gene': 'ARF3', 'score': 12.51}, {'connected_gene': 'FKBP11', 'score': 11.21}, {'connected_gene': 'ENSG00000255863', 'score': 10.63}, {'connected_gene': 'WNT10B', 'score': 7.27}, {'connected_gene': 'GC12P049011', 'score': 0.44}]
chr12	GH12I048926	48926595	48928468	0.31	[{'connected_gene': 'FKBP11', 'score': 550.77}, {'connected_gene': 'GC12M048929', 'score': 550.77}, {'connected_gene': 'CCDC65', 'score': 15.46}, {'connected_gene': 'WNT10B', 'score': 7.29}, {'connected_gene': 'ENSG00000255863', 'score': 0.39}, {'connected_gene': 'ENSG00000272822', 'score': 0.31}]
chr12	GH12I048881	48881825	48884565	1.33	[{'connected_gene': 'FKBP11', 'score': 23.92}, {'connected_gene': 'ARF3', 'score': 11.6}, {'connected_gene': 'ENSG00000255863', 'score': 11.27}, {'connected_gene': 'WNT10B', 'score': 6.73}, {'connected_gene': 'CCDC65', 'score': 6.62}, {'connected_gene': 'RND1', 'score': 1.48}, {'connected_gene': 'OR8S1', 'score': 1.32}, {'connected_gene': 'RNU6-600P', 'score': 0.44}, {'connected_gene': 'GC12M048893', 'score': 0.44}]
chr12	GH12I048956	48955330	48958306	2.07	[{'connected_gene': 'ARF3', 'score': 559.87}, {'connected_gene': 'ENSG00000272822', 'score': 550.77}, {'connected_gene': 'CCNT1', 'score': 36.4}, {'connected_gene': 'KANSL2', 'score': 36.12}, {'connected_gene': 'LMBR1L', 'score': 34.73}, {'connected_gene': 'LOC390314', 'score': 34.45}, {'connected_gene': 'DDX23', 'score': 28.49}, {'connected_gene': 'KMT2D', 'score': 27.87}, {'connected_gene': 'SENP1', 'score': 24.27}, {'connected_gene': 'PRPF40B', 'score': 20.2}, {'connected_gene': 'LOC101927267', 'score': 19.09}, {'connected_gene': 'CCDC65', 'score': 15.35}, {'connected_gene': 'BCDIN3D-AS1', 'score': 15.07}, {'connected_gene': 'OR5BK1P', 'score': 13.53}, {'connected_gene': 'ADCY6', 'score': 13.14}, {'connected_gene': 'CCDC184', 'score': 12.84}, {'connected_gene': 'PRPH', 'score': 12.22}, {'connected_gene': 'LOC100422296', 'score': 11.63}, {'connected_gene': 'FAIM2', 'score': 11.37}, {'connected_gene': 'DHH', 'score': 10.69}, {'connected_gene': 'FAM186B', 'score': 10.53}, {'connected_gene': 'FKBP11', 'score': 10.46}, {'connected_gene': 'ENSG00000257964', 'score': 10.03}, {'connected_gene': 'LOC105369760', 'score': 10.02}, {'connected_gene': 'OR8T1P', 'score': 9.77}, {'connected_gene': 'BCDIN3D', 'score': 9.72}, {'connected_gene': 'WNT10B', 'score': 7.06}, {'connected_gene': 'ENSG00000255863', 'score': 0.37}]
chr12	GH12I048865	48865133	48867327	2.08	[{'connected_gene': 'RND1', 'score': 550.77}, {'connected_gene': 'DDX23', 'score': 164.12}, {'connected_gene': 'KMT2D', 'score': 146.41}, {'connected_gene': 'KANSL2', 'score': 142.56}, {'connected_gene': 'LOC390314', 'score': 121.33}, {'connected_gene': 'CCNT1', 'score': 121.06}, {'connected_gene': 'LMBR1L', 'score': 113.34}, {'connected_gene': 'SENP1', 'score': 104.52}, {'connected_gene': 'BCDIN3D', 'score': 96.04}, {'connected_gene': 'PRPF40B', 'score': 89.13}, {'connected_gene': 'LOC100422296', 'score': 75.39}, {'connected_gene': 'ENSG00000257964', 'score': 69.85}, {'connected_gene': 'FAM186B', 'score': 39.25}, {'connected_gene': 'OR5BK1P', 'score': 38.63}, {'connected_gene': 'ADCY6', 'score': 37.78}, {'connected_gene': 'LOC101927267', 'score': 37.47}, {'connected_gene': 'BCDIN3D-AS1', 'score': 24.54}, {'connected_gene': 'CCDC184', 'score': 23.55}, {'connected_gene': 'LOC102725258', 'score': 21.39}, {'connected_gene': 'RPL37P19', 'score': 21.14}, {'connected_gene': 'LOC105369760', 'score': 11.8}, {'connected_gene': 'PRPH', 'score': 11.06}, {'connected_gene': 'C12orf54', 'score': 10.54}, {'connected_gene': 'DHH', 'score': 9.78}, {'connected_gene': 'ZNF641', 'score': 9.75}, {'connected_gene': 'CCDC65', 'score': 9.56}, {'connected_gene': 'WNT10B', 'score': 5.19}, {'connected_gene': 'RNU6-600P', 'score': 0.31}, {'connected_gene': 'GC12M048893', 'score': 0.31}]
chr12	GH12I048974	48974198	48974347	0.59	[{'connected_gene': 'RNU6-940P', 'score': 550.77}, {'connected_gene': 'GC12P049016', 'score': 550.77}, {'connected_gene': 'WNT10B', 'score': 0.77}]