PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000356929	[[21473961, 21477541], [21492047, 21492143], [21493302, 21493429], [21512011, 21512212]]	[[21476075, 21477541], [21492047, 21492143], [21493302, 21493429], [21512011, 21512014]]
ENST00000598046	[[21475405, 21477541], [21492047, 21492143], [21510761, 21510943], [21512011, 21512227]]	[[21510829, 21510943], [21512011, 21512014]]
ENST00000601295	[[21477197, 21477541], [21492047, 21492143], [21512011, 21512138]]	[[21477197, 21477541], [21492047, 21492081]]
ENST00000602023	[[21477344, 21477541], [21489619, 21489743], [21492047, 21492143], [21512011, 21512184]]	[[21477344, 21477539]]
NM_001297561	[[21473961, 21477541], [21492047, 21492143], [21512011, 21512214]]	[[21476075, 21477541], [21492047, 21492081]]
NM_001297560	[[21473961, 21477541], [21492047, 21492143], [21510761, 21510943], [21512011, 21512241]]	[[21476075, 21477541], [21492047, 21492081]]
NM_021269	[[21473962, 21477541], [21492047, 21492143], [21493302, 21493429], [21512011, 21512212]]	[[21476075, 21477541], [21492047, 21492143], [21493302, 21493429], [21512011, 21512014]]

Promoter

Chrom	Start	End	Description
chr19	21476394	21476407	CAGE_peak_5_at_ZNF708_5end
chr19	21512115	21512135	CAGE_peak_3_at_ZNF708_5end
chr19	21512144	21512191	CAGE_peak_2_at_ZNF708_5end
chr19	21512202	21512225	CAGE_peak_1_at_ZNF708_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I021474	21474199	21475600	0.74	[{'connected_gene': 'ZNF708', 'score': 18.12}, {'connected_gene': 'LINC00664', 'score': 0.44}, {'connected_gene': 'GC19P021464', 'score': 0.39}, {'connected_gene': 'ENSG00000269237', 'score': 0.2}]
chr19	GH19I021314	21314299	21315636	0.66	[{'connected_gene': 'ZNF708', 'score': 24.19}, {'connected_gene': 'ZNF429', 'score': 7.86}, {'connected_gene': 'ENSG00000213976', 'score': 6.56}, {'connected_gene': 'ZNF493', 'score': 3.25}, {'connected_gene': 'ZNF100', 'score': 2.38}, {'connected_gene': 'ZNF430', 'score': 2.0}, {'connected_gene': 'BNIP3P25', 'score': 0.77}, {'connected_gene': 'GC19M022292', 'score': 0.34}]
chr19	GH19I021328	21328149	21330189	1.96	[{'connected_gene': 'ZNF708', 'score': 574.16}, {'connected_gene': 'LOC105372321', 'score': 30.25}, {'connected_gene': 'ZNF100', 'score': 11.55}, {'connected_gene': 'ZNF43', 'score': 10.63}, {'connected_gene': 'ZNF66', 'score': 10.49}, {'connected_gene': 'ENSG00000213976', 'score': 7.53}, {'connected_gene': 'GC19P021323', 'score': 0.44}]
chr19	GH19I021589	21589648	21590174	0.2	[{'connected_gene': 'ZNF708', 'score': 15.73}, {'connected_gene': 'ENSG00000274503', 'score': 0.77}, {'connected_gene': 'LOC101929007', 'score': 0.77}, {'connected_gene': 'ENSG00000268555', 'score': 0.77}]
chr19	GH19I021482	21482399	21484148	0.59	[{'connected_gene': 'LINC00664', 'score': 550.77}, {'connected_gene': 'ENSG00000268555', 'score': 30.47}, {'connected_gene': 'ZNF708', 'score': 19.17}, {'connected_gene': 'LOC105372321', 'score': 14.67}, {'connected_gene': 'GC19P021464', 'score': 0.37}, {'connected_gene': 'ENSG00000269237', 'score': 0.18}]
chr19	GH19I021504	21504733	21507337	2.28	[{'connected_gene': 'ZNF429', 'score': 577.39}, {'connected_gene': 'ENSG00000268555', 'score': 29.56}, {'connected_gene': 'ZNF708', 'score': 19.94}, {'connected_gene': 'ZNF493', 'score': 4.65}, {'connected_gene': 'ZNF100', 'score': 2.77}, {'connected_gene': 'ZNF430', 'score': 2.32}, {'connected_gene': 'PIR57057', 'score': 0.44}, {'connected_gene': 'PIR58149', 'score': 0.39}]
chr19	GH19I021141	21141125	21144781	1.98	[{'connected_gene': 'ZNF431', 'score': 550.77}, {'connected_gene': 'ZNF100', 'score': 12.96}, {'connected_gene': 'ZNF708', 'score': 12.57}, {'connected_gene': 'ZNF714', 'score': 11.84}, {'connected_gene': 'LOC641367', 'score': 10.93}, {'connected_gene': 'ENSG00000268555', 'score': 10.71}, {'connected_gene': 'LOC105372321', 'score': 6.59}, {'connected_gene': 'ZNF738', 'score': 5.56}, {'connected_gene': 'ZNF429', 'score': 4.7}, {'connected_gene': 'RPL7AP10', 'score': 0.44}]
chr19	GH19I021358	21358339	21360401	1.29	[{'connected_gene': 'ZNF738', 'score': 570.75}, {'connected_gene': 'LOC105372321', 'score': 30.21}, {'connected_gene': 'ZNF708', 'score': 23.7}, {'connected_gene': 'ZNF100', 'score': 22.72}, {'connected_gene': 'LOC641367', 'score': 10.95}, {'connected_gene': 'ZNF43', 'score': 10.64}, {'connected_gene': 'ZNF66', 'score': 10.49}, {'connected_gene': 'ENSG00000213976', 'score': 7.62}, {'connected_gene': 'LOC100422298', 'score': 0.34}]
chr19	GH19I021461	21461848	21464548	1.38	[{'connected_gene': 'LOC105372321', 'score': 563.99}, {'connected_gene': 'GC19P021464', 'score': 550.77}, {'connected_gene': 'ENSG00000268555', 'score': 26.09}, {'connected_gene': 'ZNF708', 'score': 21.0}, {'connected_gene': 'BNIP3P26', 'score': 10.54}, {'connected_gene': 'GC19P021412', 'score': 0.23}, {'connected_gene': 'ENSG00000269237', 'score': 0.22}]
chr19	GH19I021200	21200297	21200999	0.2	[{'connected_gene': 'LOC105372321', 'score': 13.72}, {'connected_gene': 'ZNF708', 'score': 13.25}, {'connected_gene': 'GC19P021189', 'score': 0.39}, {'connected_gene': 'ENSG00000268892', 'score': 0.34}]
chr19	GH19I021196	21196804	21199774	0.84	[{'connected_gene': 'LOC105372321', 'score': 14.41}, {'connected_gene': 'ZNF708', 'score': 12.98}, {'connected_gene': 'GC19P021189', 'score': 0.44}, {'connected_gene': 'ENSG00000268892', 'score': 0.34}]
chr19	GH19I021607	21607371	21609620	0.54	[{'connected_gene': 'ENSG00000268555', 'score': 46.48}, {'connected_gene': 'ZNF708', 'score': 13.37}, {'connected_gene': 'ZNF85', 'score': 5.15}, {'connected_gene': 'GC19P021601', 'score': 0.44}, {'connected_gene': 'GC19P021614', 'score': 0.44}, {'connected_gene': 'LOC105372323', 'score': 0.39}]
chr19	GH19I021322	21322400	21323228	1.11	[{'connected_gene': 'GC19P021323', 'score': 550.77}, {'connected_gene': 'ZNF708', 'score': 31.34}, {'connected_gene': 'ZNF429', 'score': 3.72}, {'connected_gene': 'ZNF493', 'score': 3.31}, {'connected_gene': 'BNIP3P25', 'score': 0.77}]
chr19	GH19I021609	21609730	21610140	0.2	[{'connected_gene': 'ENSG00000268555', 'score': 44.44}, {'connected_gene': 'ZNF708', 'score': 13.22}, {'connected_gene': 'ZNF738', 'score': 7.15}, {'connected_gene': 'GC19P021614', 'score': 0.77}, {'connected_gene': 'GC19P021601', 'score': 0.44}, {'connected_gene': 'LOC105372323', 'score': 0.37}]
chr19	GH19I021597	21597162	21598166	0.2	[{'connected_gene': 'ENSG00000268555', 'score': 58.92}, {'connected_gene': 'ZNF708', 'score': 15.72}, {'connected_gene': 'GC19P021601', 'score': 0.77}, {'connected_gene': 'LOC105372323', 'score': 0.77}]
chr19	GH19I021590	21590317	21591619	0.54	[{'connected_gene': 'ENSG00000274503', 'score': 550.77}, {'connected_gene': 'ZNF708', 'score': 12.07}, {'connected_gene': 'LOC101929007', 'score': 0.77}, {'connected_gene': 'ENSG00000268555', 'score': 0.77}]
chr19	GH19I021220	21220998	21223533	0.31	[{'connected_gene': 'ENSG00000268892', 'score': 550.77}, {'connected_gene': 'ZNF708', 'score': 13.97}, {'connected_gene': 'MTDHP3', 'score': 5.8}, {'connected_gene': 'ZNF429', 'score': 4.67}, {'connected_gene': 'GC19P021189', 'score': 0.29}]
chr19	GH19I021567	21567660	21570235	1.39	[{'connected_gene': 'ENSG00000268081', 'score': 550.77}, {'connected_gene': 'ENSG00000268555', 'score': 62.18}, {'connected_gene': 'ZNF429', 'score': 37.28}, {'connected_gene': 'ZNF708', 'score': 18.6}, {'connected_gene': 'ZNF100', 'score': 13.01}, {'connected_gene': 'LOC641367', 'score': 10.99}, {'connected_gene': 'LINC00664', 'score': 4.99}, {'connected_gene': 'GC19P021564', 'score': 0.77}]
chr19	GH19I021610	21610516	21613339	1.1	[{'connected_gene': 'ENSG00000268555', 'score': 45.12}, {'connected_gene': 'ZNF429', 'score': 19.7}, {'connected_gene': 'ZNF708', 'score': 13.19}, {'connected_gene': 'GC19P021614', 'score': 0.77}, {'connected_gene': 'GC19P021601', 'score': 0.39}, {'connected_gene': 'LOC105372323', 'score': 0.37}]
chr19	GH19I021600	21600212	21605926	1.38	[{'connected_gene': 'GC19P021601', 'score': 550.77}, {'connected_gene': 'ENSG00000268555', 'score': 40.88}, {'connected_gene': 'ZNF429', 'score': 27.8}, {'connected_gene': 'ZNF708', 'score': 12.42}, {'connected_gene': 'LOC105372321', 'score': 10.99}, {'connected_gene': 'ZNF85', 'score': 4.94}, {'connected_gene': 'LOC105372323', 'score': 0.44}, {'connected_gene': 'GC19P021614', 'score': 0.39}]
chr19	GH19I021585	21585183	21585800	0.65	[{'connected_gene': 'ENSG00000268555', 'score': 550.77}, {'connected_gene': 'ZNF429', 'score': 20.92}, {'connected_gene': 'ZNF493', 'score': 4.02}, {'connected_gene': 'ZNF100', 'score': 2.25}, {'connected_gene': 'ZNF708', 'score': 2.1}, {'connected_gene': 'GC19M022315', 'score': 0.77}]
chr19	GH19I021323	21322119	21322268	0.2	[{'connected_gene': 'GC19P021323', 'score': 550.77}, {'connected_gene': 'LOC105372321', 'score': 29.65}, {'connected_gene': 'BNIP3P25', 'score': 0.77}, {'connected_gene': 'ZNF708', 'score': 0.44}]
chr19	GH19I021592	21592325	21595756	0.95	[{'connected_gene': 'ENSG00000274503', 'score': 550.77}, {'connected_gene': 'LOC101929007', 'score': 550.77}, {'connected_gene': 'LOC105372323', 'score': 550.77}, {'connected_gene': 'ENSG00000268555', 'score': 61.63}, {'connected_gene': 'ZNF708', 'score': 15.73}, {'connected_gene': 'LOC105372321', 'score': 14.49}]