PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000396056	[[44690218, 44690326], [44692432, 44692751], [44694048, 44694193], [44700192, 44702281]]	[[44692559, 44692751], [44694048, 44694193], [44700192, 44701439]]
ENST00000415571	[[44690232, 44690326], [44692435, 44692751], [44694048, 44694193], [44700192, 44700257]]	[[44692559, 44692751], [44694048, 44694193], [44700192, 44700257]]
ENST00000399560	[[44690233, 44690303], [44692435, 44692751], [44700192, 44700370]]	[[44692559, 44692751], [44700192, 44700312]]
ENST00000542250	[[44690233, 44690326], [44692432, 44692751], [44700192, 44701570]]	[[44700335, 44701439]]
ENST00000296092	[[44690233, 44690326], [44692432, 44692751], [44700192, 44702283]]	[[44692559, 44692751], [44700192, 44700312]]
ENST00000453164	[[44690236, 44690303], [44692432, 44692751], [44700192, 44700387]]	[[44692559, 44692751], [44700192, 44700312]]
ENST00000432115	[[44690232, 44690303], [44692435, 44692751], [44694048, 44694193]]	[[44692559, 44692751], [44694048, 44694193]]
NM_003420	[[44690232, 44690326], [44692432, 44692751], [44694048, 44694193], [44700192, 44702283]]	[[44692559, 44692751], [44694048, 44694193], [44700192, 44701439]]

Promoter

Chrom	Start	End	Description
chr3	44690211	44690267	CAGE_peak_1_at_ZNF35_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I045130	45130418	45141564	1.72	[{'connected_gene': 'ZNF502', 'score': 25.82}, {'connected_gene': 'ZNF852', 'score': 25.25}, {'connected_gene': 'RN7SL145P', 'score': 24.84}, {'connected_gene': 'ZNF35', 'score': 19.15}, {'connected_gene': 'ZNF197', 'score': 12.87}, {'connected_gene': 'RNU5B-3P', 'score': 10.74}, {'connected_gene': 'CLEC3B', 'score': 10.71}, {'connected_gene': 'TMEM158', 'score': 10.51}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZDHHC3', 'score': 10.13}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'ENSG00000202268', 'score': 9.78}, {'connected_gene': 'CDCP1', 'score': 9.36}, {'connected_gene': 'LOC105377059', 'score': 0.2}]
chr3	GH03I045052	45052688	45066370	1.72	[{'connected_gene': 'ZNF502', 'score': 29.2}, {'connected_gene': 'ZNF852', 'score': 25.25}, {'connected_gene': 'RN7SL145P', 'score': 24.84}, {'connected_gene': 'CLEC3B', 'score': 19.26}, {'connected_gene': 'ZNF35', 'score': 19.16}, {'connected_gene': 'CDCP1', 'score': 16.37}, {'connected_gene': 'ZNF197', 'score': 15.66}, {'connected_gene': 'ZNF660', 'score': 15.3}, {'connected_gene': 'EXOSC7', 'score': 12.21}, {'connected_gene': 'RNU5B-3P', 'score': 11.07}, {'connected_gene': 'TMEM158', 'score': 10.63}, {'connected_gene': 'ENSG00000202268', 'score': 10.23}, {'connected_gene': 'ZDHHC3', 'score': 10.2}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'LIMD1', 'score': 9.48}, {'connected_gene': 'TMEM42', 'score': 6.46}, {'connected_gene': 'KIAA1143', 'score': 5.3}, {'connected_gene': 'ZNF501', 'score': 4.21}, {'connected_gene': 'LOC105377059', 'score': 0.44}]
chr3	GH03I045107	45107997	45108823	0.38	[{'connected_gene': 'ZNF502', 'score': 17.75}, {'connected_gene': 'RN7SL145P', 'score': 16.63}, {'connected_gene': 'ZNF852', 'score': 14.04}, {'connected_gene': 'ZNF197', 'score': 12.87}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZNF35', 'score': 10.1}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'CDCP1', 'score': 0.28}, {'connected_gene': 'LOC105377059', 'score': 0.26}]
chr3	GH03I045103	45103514	45107225	1.45	[{'connected_gene': 'ZNF502', 'score': 17.76}, {'connected_gene': 'RN7SL145P', 'score': 16.63}, {'connected_gene': 'ZNF852', 'score': 14.04}, {'connected_gene': 'ZNF197', 'score': 12.87}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZNF35', 'score': 10.1}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'TMEM158', 'score': 4.98}, {'connected_gene': 'CDCP1', 'score': 1.67}, {'connected_gene': 'LOC105377059', 'score': 0.28}]
chr3	GH03I044712	44712049	44713600	1.83	[{'connected_gene': 'ZNF502', 'score': 578.17}, {'connected_gene': 'SOCS5P3', 'score': 550.77}, {'connected_gene': 'ZNF852', 'score': 13.1}, {'connected_gene': 'ZNF35', 'score': 10.96}, {'connected_gene': 'ZDHHC3', 'score': 10.09}, {'connected_gene': 'LOC105377056', 'score': 0.37}]
chr3	GH03I045203	45203749	45204880	0.69	[{'connected_gene': 'ZNF35', 'score': 5.89}, {'connected_gene': 'CDCP1', 'score': 4.39}, {'connected_gene': 'LOC101928636', 'score': 0.77}, {'connected_gene': 'TMEM158', 'score': 0.34}]
chr3	GH03I044648	44648109	44649801	1.94	[{'connected_gene': 'ZNF35', 'score': 561.52}, {'connected_gene': 'ZNF852', 'score': 13.13}, {'connected_gene': 'RPS24P8', 'score': 12.77}, {'connected_gene': 'ZNF501', 'score': 12.23}, {'connected_gene': 'ZNF197', 'score': 10.38}, {'connected_gene': 'ZNF502', 'score': 10.09}, {'connected_gene': 'ZDHHC3', 'score': 10.08}, {'connected_gene': 'KIAA1143', 'score': 5.05}, {'connected_gene': 'ENSG00000272077', 'score': 0.37}, {'connected_gene': 'ENSG00000236869', 'score': 0.28}]
chr3	GH03I043670	43670368	43672231	0.89	[{'connected_gene': 'ZNF35', 'score': 13.11}, {'connected_gene': 'TUBAP3', 'score': 0.37}, {'connected_gene': 'ANO10', 'score': 0.34}, {'connected_gene': 'RPL18AP9', 'score': 0.09}, {'connected_gene': 'GC03M043165', 'score': 0.06}]
chr3	GH03I043689	43689212	43699626	2.28	[{'connected_gene': 'ABHD5', 'score': 555.66}, {'connected_gene': 'ZNF35', 'score': 13.11}, {'connected_gene': 'ZNF852', 'score': 10.17}, {'connected_gene': 'ZNF660', 'score': 4.8}, {'connected_gene': 'ENSG00000261786', 'score': 4.19}, {'connected_gene': 'ANO10', 'score': 0.77}, {'connected_gene': 'PIR40588', 'score': 0.29}, {'connected_gene': 'GC03M043165', 'score': 0.06}]
chr3	GH03I044233	44233079	44238725	1.17	[{'connected_gene': 'ZNF660', 'score': 39.63}, {'connected_gene': 'ZNF502', 'score': 20.16}, {'connected_gene': 'ZNF197', 'score': 19.44}, {'connected_gene': 'ZKSCAN7', 'score': 12.54}, {'connected_gene': 'ZNF445', 'score': 11.38}, {'connected_gene': 'ZNF852', 'score': 10.59}, {'connected_gene': 'RNU6-367P', 'score': 9.97}, {'connected_gene': 'ZNF35', 'score': 9.79}, {'connected_gene': 'SNRK-AS1', 'score': 9.72}, {'connected_gene': 'MIR138-1', 'score': 9.49}, {'connected_gene': 'TCAIM', 'score': 7.76}, {'connected_gene': 'ENSG00000271941', 'score': 5.94}, {'connected_gene': 'TOPAZ1', 'score': 0.44}, {'connected_gene': 'PIR53341', 'score': 0.13}]
chr3	GH03I044509	44509381	44512017	1.98	[{'connected_gene': 'ZNF852', 'score': 563.79}, {'connected_gene': 'ZNF660', 'score': 50.7}, {'connected_gene': 'ZNF197', 'score': 18.77}, {'connected_gene': 'ZNF35', 'score': 10.87}, {'connected_gene': 'ZDHHC3', 'score': 10.07}, {'connected_gene': 'ZNF502', 'score': 9.96}, {'connected_gene': 'EI24P3', 'score': 0.37}]
chr3	GH03I045269	45269566	45270695	0.89	[{'connected_gene': 'ZNF852', 'score': 13.04}, {'connected_gene': 'TMEM158', 'score': 11.24}, {'connected_gene': 'ZNF35', 'score': 10.77}, {'connected_gene': 'ZDHHC3', 'score': 10.09}, {'connected_gene': 'RN7SL145P', 'score': 10.05}, {'connected_gene': 'ZNF502', 'score': 9.91}, {'connected_gene': 'CCR3', 'score': 4.04}, {'connected_gene': 'ENSG00000202268', 'score': 0.39}, {'connected_gene': 'GC03M045255', 'score': 0.39}, {'connected_gene': 'LOC105377061', 'score': 0.28}]
chr3	GH03I044337	44337275	44340862	2.09	[{'connected_gene': 'TCAIM', 'score': 550.77}, {'connected_gene': 'LOC105377055', 'score': 550.77}, {'connected_gene': 'ZNF660', 'score': 44.39}, {'connected_gene': 'ZNF852', 'score': 15.31}, {'connected_gene': 'ZNF35', 'score': 13.14}, {'connected_gene': 'SNRK-AS1', 'score': 12.19}, {'connected_gene': 'ZNF445', 'score': 10.74}, {'connected_gene': 'ZNF197', 'score': 7.35}, {'connected_gene': 'ENSG00000271941', 'score': 5.94}, {'connected_gene': 'ZNF502', 'score': 4.87}, {'connected_gene': 'LINC01988', 'score': 0.17}]
chr3	GH03I044992	44992069	44997360	1.57	[{'connected_gene': 'EXOSC7', 'score': 16.32}, {'connected_gene': 'RNU5B-3P', 'score': 11.14}, {'connected_gene': 'CLEC3B', 'score': 10.23}, {'connected_gene': 'LIMD1', 'score': 9.39}, {'connected_gene': 'ENSG00000202268', 'score': 9.3}, {'connected_gene': 'ZNF502', 'score': 8.38}, {'connected_gene': 'ZNF35', 'score': 2.08}, {'connected_gene': 'ZNF660', 'score': 1.63}, {'connected_gene': 'ZDHHC3', 'score': 0.37}]
chr3	GH03I044729	44729001	44730400	2.03	[{'connected_gene': 'ZNF501', 'score': 550.77}, {'connected_gene': 'LOC105377056', 'score': 550.77}, {'connected_gene': 'KIAA1143', 'score': 20.81}, {'connected_gene': 'ZNF852', 'score': 13.09}, {'connected_gene': 'ZNF35', 'score': 10.92}, {'connected_gene': 'ZNF502', 'score': 10.24}, {'connected_gene': 'ZDHHC3', 'score': 10.09}, {'connected_gene': 'PIR43736', 'score': 0.37}]
chr3	GH03I045117	45117655	45128322	1.63	[{'connected_gene': 'RN7SL145P', 'score': 33.45}, {'connected_gene': 'ZNF852', 'score': 31.56}, {'connected_gene': 'LIMD1', 'score': 20.77}, {'connected_gene': 'ZNF502', 'score': 20.45}, {'connected_gene': 'ZNF445', 'score': 18.34}, {'connected_gene': 'TMEM158', 'score': 17.84}, {'connected_gene': 'ZNF197', 'score': 12.87}, {'connected_gene': 'FYCO1', 'score': 12.84}, {'connected_gene': 'CDCP1', 'score': 12.82}, {'connected_gene': 'RNU5B-3P', 'score': 10.33}, {'connected_gene': 'CLEC3B', 'score': 10.32}, {'connected_gene': 'XCR1', 'score': 10.29}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZNF35', 'score': 10.1}, {'connected_gene': 'ENSG00000202268', 'score': 9.66}, {'connected_gene': 'LOC105377059', 'score': 0.23}]
chr3	GH03I044438	44438419	44441955	1.49	[{'connected_gene': 'LINC00694', 'score': 550.77}, {'connected_gene': 'ZNF660', 'score': 48.66}, {'connected_gene': 'ZNF197', 'score': 25.29}, {'connected_gene': 'ZNF852', 'score': 22.6}, {'connected_gene': 'ZNF502', 'score': 17.77}, {'connected_gene': 'ZNF445', 'score': 10.22}, {'connected_gene': 'ZNF35', 'score': 10.13}, {'connected_gene': 'GC03M044441', 'score': 0.44}]
chr3	GH03I044584	44584128	44585846	1.71	[{'connected_gene': 'ZNF197', 'score': 564.51}, {'connected_gene': 'ZNF660', 'score': 550.44}, {'connected_gene': 'ZNF197-AS1', 'score': 10.93}, {'connected_gene': 'ZKSCAN7', 'score': 10.75}, {'connected_gene': 'ZNF501', 'score': 10.62}, {'connected_gene': 'ZNF35', 'score': 10.23}, {'connected_gene': 'PIR39553', 'score': 0.28}, {'connected_gene': 'ENSG00000236869', 'score': 0.15}]
chr3	GH03I044532	44532929	44533078	0.99	[{'connected_gene': 'ZNF197', 'score': 24.83}, {'connected_gene': 'ZNF852', 'score': 12.13}, {'connected_gene': 'ZKSCAN7', 'score': 11.23}, {'connected_gene': 'ENSG00000235845', 'score': 10.51}, {'connected_gene': 'TGM4', 'score': 10.51}, {'connected_gene': 'ZNF445', 'score': 10.46}, {'connected_gene': 'ZNF660', 'score': 10.35}, {'connected_gene': 'ZNF501', 'score': 10.05}, {'connected_gene': 'CLEC3B', 'score': 9.82}, {'connected_gene': 'RNU5B-3P', 'score': 9.81}, {'connected_gene': 'ZNF35', 'score': 9.64}, {'connected_gene': 'KIAA1143', 'score': 6.39}, {'connected_gene': 'LOC100419748', 'score': 0.77}]
chr3	GH03I044624	44624201	44626393	2.02	[{'connected_gene': 'ZNF197', 'score': 584.76}, {'connected_gene': 'ZNF197-AS1', 'score': 550.77}, {'connected_gene': 'ZNF35', 'score': 21.81}, {'connected_gene': 'ZNF852', 'score': 21.56}, {'connected_gene': 'KIAA1143', 'score': 14.13}, {'connected_gene': 'ZNF660', 'score': 11.28}, {'connected_gene': 'ZDHHC3', 'score': 10.08}, {'connected_gene': 'ZNF502', 'score': 10.05}, {'connected_gene': 'ZNF445', 'score': 10.0}, {'connected_gene': 'ENSG00000236869', 'score': 0.21}]
chr3	GH03I044602	44602478	44602731	0.22	[{'connected_gene': 'ZNF197-AS1', 'score': 11.74}, {'connected_gene': 'ZNF445', 'score': 11.57}, {'connected_gene': 'ZKSCAN7', 'score': 10.52}, {'connected_gene': 'ZNF501', 'score': 9.77}, {'connected_gene': 'ZNF660', 'score': 2.28}, {'connected_gene': 'ZNF35', 'score': 2.14}, {'connected_gene': 'ZNF197', 'score': 1.54}, {'connected_gene': 'PIR39553', 'score': 0.37}, {'connected_gene': 'ENSG00000236869', 'score': 0.18}]
chr3	GH03I043685	43685888	43688788	0.93	[{'connected_gene': 'TUBAP3', 'score': 550.77}, {'connected_gene': 'ZNF662', 'score': 21.2}, {'connected_gene': 'ZNF852', 'score': 14.04}, {'connected_gene': 'ZNF197', 'score': 12.87}, {'connected_gene': 'SNRK-AS1', 'score': 11.22}, {'connected_gene': 'ZNF35', 'score': 10.08}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'ABHD5', 'score': 4.91}, {'connected_gene': 'ENSG00000261786', 'score': 4.34}, {'connected_gene': 'ANO10', 'score': 0.77}, {'connected_gene': 'RPL18AP9', 'score': 0.08}, {'connected_gene': 'GC03M043165', 'score': 0.06}]
chr3	GH03I045592	45592614	45598684	1.75	[{'connected_gene': 'PIR32515', 'score': 550.77}, {'connected_gene': 'PIR41902', 'score': 550.77}, {'connected_gene': 'SACM1L', 'score': 12.6}, {'connected_gene': 'ZNF35', 'score': 10.77}, {'connected_gene': 'RN7SL145P', 'score': 10.12}, {'connected_gene': 'ZDHHC3', 'score': 10.05}, {'connected_gene': 'ZNF502', 'score': 9.9}, {'connected_gene': 'LARS2', 'score': 8.12}, {'connected_gene': 'LIMD1', 'score': 6.77}]
chr3	GH03I044685	44685000	44686200	1.26	[{'connected_gene': 'ENSG00000236869', 'score': 550.77}, {'connected_gene': 'LOC101928592', 'score': 550.77}, {'connected_gene': 'ZNF197', 'score': 24.18}, {'connected_gene': 'ZNF35', 'score': 21.76}, {'connected_gene': 'KIAA1143', 'score': 15.25}, {'connected_gene': 'ZNF852', 'score': 13.11}, {'connected_gene': 'KIF15', 'score': 11.25}, {'connected_gene': 'ZNF501', 'score': 11.14}, {'connected_gene': 'ZNF660', 'score': 10.61}, {'connected_gene': 'ZNF502', 'score': 10.19}, {'connected_gene': 'ZKSCAN7', 'score': 10.17}, {'connected_gene': 'ZDHHC3', 'score': 10.09}, {'connected_gene': 'ZNF445', 'score': 8.93}, {'connected_gene': 'PIR62310', 'score': 0.77}]
chr3	GH03I044682	44682137	44683500	0.2	[{'connected_gene': 'PIR62310', 'score': 550.77}, {'connected_gene': 'ZNF197', 'score': 15.2}, {'connected_gene': 'ZNF501', 'score': 11.21}, {'connected_gene': 'ZNF660', 'score': 11.08}, {'connected_gene': 'ZNF35', 'score': 11.01}, {'connected_gene': 'ZKSCAN7', 'score': 10.07}, {'connected_gene': 'ENSG00000236869', 'score': 0.77}, {'connected_gene': 'LOC101928592', 'score': 0.77}, {'connected_gene': 'LOC100419752', 'score': 0.44}]