PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NR_103551	[[44930422, 44934717], [44935941, 44936541], [44946746, 44946805], [44946997, 44947208], [44951700, 44951788], [44952496, 44952665]]	None
NM_014518	[[44930422, 44934717], [44936396, 44936541], [44946746, 44946805], [44946997, 44947208], [44951700, 44951788], [44952496, 44952665]]	[[44932477, 44934717], [44936396, 44936541], [44946746, 44946805], [44946997, 44947031]]
NM_001278510	[[44930422, 44934717], [44936414, 44936541], [44946746, 44946805], [44946997, 44947208], [44951700, 44951788], [44952708, 44952766]]	[[44932477, 44934717], [44936414, 44936541], [44946746, 44946805], [44946997, 44947031]]

Promoter

Chrom	Start	End	Description
chr19	44952635	44952668	CAGE_peak_1_at_ZNF229_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I044447	44447435	44449102	1.9	[{'connected_gene': 'ZNF229', 'score': 556.33}, {'connected_gene': 'ENSG00000267188', 'score': 550.77}, {'connected_gene': 'ZNF225', 'score': 15.51}, {'connected_gene': 'ZNF180', 'score': 15.46}, {'connected_gene': 'ZNF226', 'score': 13.36}, {'connected_gene': 'ZNF227', 'score': 10.83}, {'connected_gene': 'ZNF45', 'score': 10.69}, {'connected_gene': 'CLASRP', 'score': 10.3}, {'connected_gene': 'ZNF235', 'score': 10.07}, {'connected_gene': 'ZNF223', 'score': 9.98}, {'connected_gene': 'XRCC1', 'score': 9.66}, {'connected_gene': 'ZNF285', 'score': 7.05}]
chr19	GH19I044442	44442917	44442976	0.5	[{'connected_gene': 'ZNF229', 'score': 550.44}, {'connected_gene': 'ZNF180', 'score': 11.76}, {'connected_gene': 'ZNF233', 'score': 10.26}, {'connected_gene': 'ENSG00000267188', 'score': 0.44}, {'connected_gene': 'ZNF285', 'score': 0.26}]
chr19	GH19I044111	44111601	44114401	2.38	[{'connected_gene': 'ZNF225', 'score': 686.86}, {'connected_gene': 'LOC100379224', 'score': 588.2}, {'connected_gene': 'ZNF45', 'score': 153.65}, {'connected_gene': 'ZNF180', 'score': 126.43}, {'connected_gene': 'ZNF227', 'score': 116.48}, {'connected_gene': 'ZNF283', 'score': 94.32}, {'connected_gene': 'ZNF576', 'score': 92.28}, {'connected_gene': 'ZNF112', 'score': 89.44}, {'connected_gene': 'ZNF224', 'score': 85.95}, {'connected_gene': 'ZNF226', 'score': 76.62}, {'connected_gene': 'ZNF223', 'score': 72.27}, {'connected_gene': 'ZNF235', 'score': 71.36}, {'connected_gene': 'ZNF155', 'score': 71.03}, {'connected_gene': 'ENSG00000267191', 'score': 68.86}, {'connected_gene': 'ZNF234', 'score': 67.36}, {'connected_gene': 'LOC100505715', 'score': 64.2}, {'connected_gene': 'XRCC1', 'score': 62.31}, {'connected_gene': 'CLASRP', 'score': 61.05}, {'connected_gene': 'ZNF284', 'score': 60.25}, {'connected_gene': 'ENSG00000267114', 'score': 56.73}, {'connected_gene': 'LOC101928063', 'score': 45.31}, {'connected_gene': 'MRPS15P2', 'score': 44.13}, {'connected_gene': 'ZNF285', 'score': 38.96}, {'connected_gene': 'ZNF230', 'score': 37.63}, {'connected_gene': 'IRGQ', 'score': 36.31}, {'connected_gene': 'ZNF222', 'score': 26.75}, {'connected_gene': 'ZNF428', 'score': 21.87}, {'connected_gene': 'PINLYP', 'score': 21.12}, {'connected_gene': 'CEACAM19', 'score': 12.22}, {'connected_gene': 'SMG9', 'score': 11.78}, {'connected_gene': 'ZNF233', 'score': 10.88}, {'connected_gene': 'PHLDB3', 'score': 10.56}, {'connected_gene': 'PPP1R37', 'score': 10.2}, {'connected_gene': 'ZNF285B', 'score': 10.02}, {'connected_gene': 'ZNF229', 'score': 1.77}, {'connected_gene': 'ZNF404', 'score': 1.39}, {'connected_gene': 'KCNN4', 'score': 1.3}, {'connected_gene': 'ZNF221', 'score': 1.3}]
chr19	GH19I044245	44245432	44245693	0.46	[{'connected_gene': 'MRPS15P2', 'score': 17.86}, {'connected_gene': 'ZNF180', 'score': 17.37}, {'connected_gene': 'ZNF45', 'score': 16.89}, {'connected_gene': 'ZNF283', 'score': 15.9}, {'connected_gene': 'ZNF112', 'score': 14.41}, {'connected_gene': 'ZNF225', 'score': 14.24}, {'connected_gene': 'ZNF226', 'score': 13.56}, {'connected_gene': 'ZNF224', 'score': 13.37}, {'connected_gene': 'ZNF221', 'score': 12.42}, {'connected_gene': 'ZNF284', 'score': 11.75}, {'connected_gene': 'ZNF234', 'score': 11.65}, {'connected_gene': 'ZNF155', 'score': 11.27}, {'connected_gene': 'ZNF229', 'score': 11.04}, {'connected_gene': 'ZNF223', 'score': 11.02}, {'connected_gene': 'ZNF235', 'score': 10.59}, {'connected_gene': 'ZNF285', 'score': 2.88}, {'connected_gene': 'ZNF227', 'score': 2.55}, {'connected_gene': 'ZNF233', 'score': 2.07}, {'connected_gene': 'LYPD5', 'score': 1.83}, {'connected_gene': 'ENSG00000279103', 'score': 0.77}, {'connected_gene': 'PIR42464', 'score': 0.39}]
chr19	GH19I044316	44316968	44317298	0.22	[{'connected_gene': 'ZNF233', 'score': 18.79}, {'connected_gene': 'ZNF229', 'score': 10.56}, {'connected_gene': 'ZNF112', 'score': 2.91}, {'connected_gene': 'ZNF221', 'score': 2.81}, {'connected_gene': 'ZNF285', 'score': 2.5}, {'connected_gene': 'ZNF223', 'score': 1.83}, {'connected_gene': 'ZNF284', 'score': 1.6}, {'connected_gene': 'ZNF180', 'score': 1.47}, {'connected_gene': 'ZNF227', 'score': 1.4}, {'connected_gene': 'PIR37551', 'score': 0.39}, {'connected_gene': 'GC19M044340', 'score': 0.26}]
chr19	GH19I044400	44400801	44402205	1.93	[{'connected_gene': 'ZNF285', 'score': 590.39}, {'connected_gene': 'ENSG00000267173', 'score': 550.77}, {'connected_gene': 'ZNF229', 'score': 11.21}, {'connected_gene': 'ZNF180', 'score': 6.35}, {'connected_gene': 'GC19P044381', 'score': 0.34}, {'connected_gene': 'ENSG00000267188', 'score': 0.25}]
chr19	GH19I044268	44268943	44269238	0.54	[{'connected_gene': 'GC19P044273', 'score': 550.77}, {'connected_gene': 'ZNF227', 'score': 12.62}, {'connected_gene': 'ZNF226', 'score': 12.5}, {'connected_gene': 'ZNF229', 'score': 10.35}, {'connected_gene': 'ZNF155', 'score': 5.28}, {'connected_gene': 'ZNF285', 'score': 2.19}, {'connected_gene': 'ZNF112', 'score': 2.06}, {'connected_gene': 'ZNF233', 'score': 1.95}, {'connected_gene': 'LYPD5', 'score': 1.85}, {'connected_gene': 'ZNF221', 'score': 1.64}, {'connected_gene': 'ZNF235', 'score': 1.61}, {'connected_gene': 'ZNF234', 'score': 1.59}, {'connected_gene': 'ZNF224', 'score': 1.52}, {'connected_gene': 'ZNF284', 'score': 1.35}, {'connected_gene': 'PIR50306', 'score': 0.44}]