PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000528157	[[51422477, 51422867], [51423638, 51423766], [51425167, 51425309], [51426335, 51426828]]	[[51422773, 51422867], [51423638, 51423766], [51425167, 51425309], [51426335, 51426520]]
ENST00000446668	[[51422787, 51422867], [51423638, 51423766], [51424339, 51424477], [51425167, 51425309], [51426335, 51426693]]	[[51422787, 51422867], [51423638, 51423766], [51424339, 51424345]]
ENST00000470900	[[51422839, 51423766], [51425167, 51425309], [51426335, 51426775]]	None
ENST00000482262	[[51425118, 51425309], [51426335, 51426580]]	None
NM_006010	[[51422667, 51422867], [51423638, 51423766], [51425167, 51425309], [51426335, 51426828]]	[[51422764, 51422867], [51423638, 51423766], [51425167, 51425309], [51426335, 51426520]]

Promoter

Chrom	Start	End	Description
chr3	51422713	51422728	CAGE_peak_1_at_MANF_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I051383	51383446	51392956	2.28	[{'connected_gene': 'MANF', 'score': 550.77}, {'connected_gene': 'RBM15B', 'score': 550.77}, {'connected_gene': 'PIR60056', 'score': 550.77}, {'connected_gene': 'DCAF1', 'score': 39.36}, {'connected_gene': 'RRP9', 'score': 17.48}, {'connected_gene': 'RAD54L2', 'score': 13.43}, {'connected_gene': 'TEX264', 'score': 9.71}, {'connected_gene': 'GRM2', 'score': 5.92}, {'connected_gene': 'CACNA2D2', 'score': 5.51}, {'connected_gene': 'GPR62', 'score': 4.66}, {'connected_gene': 'PCBP4', 'score': 4.5}, {'connected_gene': 'PIR52841', 'score': 0.77}, {'connected_gene': 'GC03P051392', 'score': 0.77}, {'connected_gene': 'PIR58843', 'score': 0.77}, {'connected_gene': 'PIR33911', 'score': 0.77}, {'connected_gene': 'DOCK3', 'score': 0.03}]
chr3	GH03I051379	51379320	51380133	0.51	[{'connected_gene': 'MANF', 'score': 0.44}, {'connected_gene': 'PIR61668', 'score': 0.25}, {'connected_gene': 'DOCK3', 'score': 0.03}]
chr3	GH03I051380	51380150	51380299	0.4	[{'connected_gene': 'MANF', 'score': 0.77}, {'connected_gene': 'PIR61668', 'score': 0.25}, {'connected_gene': 'DOCK3', 'score': 0.03}]
chr3	GH03I050616	50616000	50633999	2.7	[{'connected_gene': 'MAPKAPK3', 'score': 566.78}, {'connected_gene': 'DOCK3', 'score': 23.56}, {'connected_gene': 'HEMK1', 'score': 21.59}, {'connected_gene': 'C3orf18', 'score': 12.32}, {'connected_gene': 'MANF', 'score': 10.68}, {'connected_gene': 'GNAI2', 'score': 6.5}, {'connected_gene': 'LSMEM2', 'score': 5.74}, {'connected_gene': 'HYAL1', 'score': 3.89}, {'connected_gene': 'RASSF1', 'score': 3.77}, {'connected_gene': 'CYB561D2', 'score': 1.38}, {'connected_gene': 'CISH', 'score': 0.39}, {'connected_gene': 'LINC02019', 'score': 0.26}]
chr3	GH03I051339	51339062	51341982	1.23	[{'connected_gene': 'TEX264', 'score': 17.74}, {'connected_gene': 'PIR61668', 'score': 0.44}, {'connected_gene': 'MANF', 'score': 0.26}, {'connected_gene': 'DOCK3', 'score': 0.03}]
chr3	GH03I051343	51343687	51345373	0.57	[{'connected_gene': 'TEX264', 'score': 11.18}, {'connected_gene': 'PIR61668', 'score': 0.39}, {'connected_gene': 'MANF', 'score': 0.26}, {'connected_gene': 'DOCK3', 'score': 0.03}]
chr3	GH03I051355	51355777	51357707	0.52	[{'connected_gene': 'GRM2', 'score': 4.69}, {'connected_gene': 'MANF', 'score': 0.31}, {'connected_gene': 'PIR61668', 'score': 0.31}, {'connected_gene': 'DOCK3', 'score': 0.03}]
chr3	GH03I050614	50614150	50614339	1	[{'connected_gene': 'DOCK3', 'score': 19.57}, {'connected_gene': 'C3orf18', 'score': 12.35}, {'connected_gene': 'HEMK1', 'score': 12.34}, {'connected_gene': 'MANF', 'score': 10.68}, {'connected_gene': 'MAPKAPK3', 'score': 0.77}, {'connected_gene': 'CISH', 'score': 0.77}, {'connected_gene': 'LINC02019', 'score': 0.22}]
chr3	GH03I050598	50598964	50614009	3.21	[{'connected_gene': 'CISH', 'score': 557.82}, {'connected_gene': 'MAPKAPK3', 'score': 554.96}, {'connected_gene': 'HEMK1', 'score': 34.01}, {'connected_gene': 'RBM5', 'score': 31.64}, {'connected_gene': 'RBM6', 'score': 31.48}, {'connected_gene': 'TMEM115', 'score': 23.58}, {'connected_gene': 'RAD54L2', 'score': 22.02}, {'connected_gene': 'SEMA3F-AS1', 'score': 15.35}, {'connected_gene': 'C3orf18', 'score': 14.08}, {'connected_gene': 'DOCK3', 'score': 11.29}, {'connected_gene': 'RASSF1', 'score': 10.86}, {'connected_gene': 'MANF', 'score': 10.68}, {'connected_gene': 'UBA7', 'score': 10.65}, {'connected_gene': 'NAT6', 'score': 10.24}, {'connected_gene': 'TRAIP', 'score': 9.95}, {'connected_gene': 'HYAL1', 'score': 3.89}, {'connected_gene': 'ENSG00000230454', 'score': 3.87}, {'connected_gene': 'ENSG00000280382', 'score': 0.44}]