PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000538789	[[26158413, 26158649], [26161512, 26162337], [26163903, 26164045], [26185770, 26185903]]	[[26158578, 26158649], [26161512, 26162337], [26163903, 26164045], [26185770, 26185848]]
ENST00000481602	[[26160496, 26160822], [26163903, 26164038]]	None
ENST00000374298	[[26160496, 26162337], [26163903, 26164045], [26185770, 26185903]]	[[26161483, 26162337], [26163903, 26164045], [26185770, 26185848]]
NM_001287490	[[26158403, 26158649], [26161512, 26162337], [26163903, 26164045], [26185770, 26185949]]	[[26158578, 26158649], [26161512, 26162337], [26163903, 26164045], [26185770, 26185848]]
NM_024037	[[26160496, 26162337], [26163903, 26164045], [26185770, 26185949]]	[[26161483, 26162337], [26163903, 26164045], [26185770, 26185848]]

Promoter

Chrom	Start	End	Description
chr1	26185844	26185954	CAGE_peak_1_at_C1orf135_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I025834	25834578	25834922	0.31	[{'connected_gene': 'SELENON', 'score': 29.16}, {'connected_gene': 'PAQR7', 'score': 12.15}, {'connected_gene': 'ENSG00000207302', 'score': 12.15}, {'connected_gene': 'EXTL1', 'score': 9.84}, {'connected_gene': 'PIR62460', 'score': 0.77}, {'connected_gene': 'AUNIP', 'score': 0.34}]
chr1	GH01I025835	25835100	25835865	0.43	[{'connected_gene': 'PAQR7', 'score': 18.2}, {'connected_gene': 'ENSG00000236528', 'score': 11.94}, {'connected_gene': 'AUNIP', 'score': 11.94}, {'connected_gene': 'ENSG00000207302', 'score': 11.46}, {'connected_gene': 'ENSG00000252190', 'score': 10.89}, {'connected_gene': 'ENSG00000252691', 'score': 10.89}, {'connected_gene': 'EXTL1', 'score': 10.51}, {'connected_gene': 'RNU6-110P', 'score': 9.85}, {'connected_gene': 'PIR62460', 'score': 0.77}]
chr1	GH01I025858	25858278	25862859	2.55	[{'connected_gene': 'ENSG00000236528', 'score': 550.77}, {'connected_gene': 'AUNIP', 'score': 550.77}, {'connected_gene': 'ARID1A', 'score': 62.5}, {'connected_gene': 'HMGN2', 'score': 42.15}, {'connected_gene': 'MTFR1L', 'score': 39.99}, {'connected_gene': 'ENSG00000261349', 'score': 34.26}, {'connected_gene': 'SELENON', 'score': 29.25}, {'connected_gene': 'LOC101928324', 'score': 21.96}, {'connected_gene': 'RPL17P9', 'score': 20.87}, {'connected_gene': 'ZNF593', 'score': 13.59}, {'connected_gene': 'SYF2', 'score': 12.57}, {'connected_gene': 'LOC101928728', 'score': 11.68}, {'connected_gene': 'RSRP1', 'score': 10.44}, {'connected_gene': 'STMN1', 'score': 10.16}, {'connected_gene': 'PAQR7', 'score': 0.37}]
chr1	GH01I025831	25831383	25833339	0.88	[{'connected_gene': 'PIR56916', 'score': 550.77}, {'connected_gene': 'ENSG00000272478', 'score': 550.77}, {'connected_gene': 'PIR62460', 'score': 550.77}, {'connected_gene': 'SELENON', 'score': 40.63}, {'connected_gene': 'PAQR7', 'score': 12.05}, {'connected_gene': 'ENSG00000207302', 'score': 12.04}, {'connected_gene': 'EXTL1', 'score': 10.82}, {'connected_gene': 'SLC30A2', 'score': 9.86}, {'connected_gene': 'MTFR1L', 'score': 0.39}, {'connected_gene': 'AUNIP', 'score': 0.31}]
chr1	GH01I025903	25903144	25908088	2.26	[{'connected_gene': 'PIR46219', 'score': 550.77}, {'connected_gene': 'STMN1', 'score': 550.77}, {'connected_gene': 'LOC105376885', 'score': 550.77}, {'connected_gene': 'MIR3917', 'score': 550.77}, {'connected_gene': 'MTFR1L', 'score': 25.02}, {'connected_gene': 'GPN2', 'score': 23.24}, {'connected_gene': 'ENSG00000261349', 'score': 20.02}, {'connected_gene': 'ARID1A', 'score': 18.71}, {'connected_gene': 'HMGN2', 'score': 13.71}, {'connected_gene': 'PIGV', 'score': 13.67}, {'connected_gene': 'RPL17P9', 'score': 11.92}, {'connected_gene': 'ENSG00000236528', 'score': 11.9}, {'connected_gene': 'AUNIP', 'score': 11.9}, {'connected_gene': 'RNU6-110P', 'score': 10.8}, {'connected_gene': 'LOC101928324', 'score': 10.59}, {'connected_gene': 'LOC101928728', 'score': 10.47}, {'connected_gene': 'RSRP1', 'score': 10.47}, {'connected_gene': 'EXTL1', 'score': 10.25}, {'connected_gene': 'TRIM63', 'score': 9.4}, {'connected_gene': 'SELENON', 'score': 8.18}]