PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000455798	[[54693788, 54694013], [54695211, 54695458], [54695571, 54695815], [54695966, 54696206]]	[[54695215, 54695458], [54695571, 54695815], [54695966, 54696206]]
ENST00000456872	[[54694118, 54694222], [54695211, 54695458], [54695571, 54695815], [54695966, 54696224]]	[[54694217, 54694222], [54695211, 54695458], [54695571, 54695815], [54695966, 54696224]]
ENST00000302937	[[54694118, 54694301], [54695211, 54695458], [54695571, 54695815], [54695966, 54696224], [54697029, 54697521]]	[[54695215, 54695458], [54695571, 54695815], [54695966, 54696224], [54697029, 54697217]]
ENST00000429671	[[54694137, 54694222], [54695211, 54695458], [54695571, 54695815], [54695966, 54696224], [54697029, 54697173], [54697476, 54697585]]	[[54695215, 54695458], [54695571, 54695815], [54695966, 54696224], [54697029, 54697173], [54697476, 54697526]]
ENST00000496583	[[54694193, 54695815], [54695966, 54696224], [54697029, 54697521]]	None
ENST00000396383	[[54694581, 54694888], [54695211, 54695458], [54695571, 54695815], [54695966, 54696224], [54697029, 54697521]]	[[54695215, 54695458], [54695571, 54695815], [54695966, 54696224], [54697029, 54697217]]
ENST00000396388	[[54695103, 54695458], [54695571, 54695815], [54695966, 54696224], [54697029, 54697521]]	[[54695215, 54695458], [54695571, 54695815], [54695966, 54696224], [54697029, 54697217]]
NM_001282333	[[54694118, 54694222], [54695211, 54695458], [54695571, 54695815], [54695966, 54696224], [54697029, 54697173], [54697476, 54698394]]	[[54694217, 54694222], [54695211, 54695458], [54695571, 54695815], [54695966, 54696224], [54697029, 54697173], [54697476, 54697526]]
NM_024075	[[54694118, 54694301], [54695211, 54695458], [54695571, 54695815], [54695966, 54696224], [54697029, 54698394]]	[[54695215, 54695458], [54695571, 54695815], [54695966, 54696224], [54697029, 54697217]]
NM_001282332	[[54694581, 54694888], [54695211, 54695458], [54695571, 54695815], [54695966, 54696224], [54697029, 54698394]]	[[54695215, 54695458], [54695571, 54695815], [54695966, 54696224], [54697029, 54697217]]
NM_001077446	[[54695064, 54695458], [54695571, 54695815], [54695966, 54696224], [54697029, 54698394]]	[[54695215, 54695458], [54695571, 54695815], [54695966, 54696224], [54697029, 54697217]]

Promoter

Chrom	Start	End	Description
chr19	54694169	54694214	CAGE_peak_2_at_TSEN34_5end
chr19	54695098	54695178	CAGE_peak_1_at_TSEN34_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I054186	54186204	54193039	2.29	[{'connected_gene': 'TSEN34', 'score': 559.63}, {'connected_gene': 'MBOAT7', 'score': 550.77}, {'connected_gene': 'PRPF31', 'score': 35.67}, {'connected_gene': 'ZNF845', 'score': 21.82}, {'connected_gene': 'ZNF665', 'score': 21.48}, {'connected_gene': 'ENSG00000269001', 'score': 19.65}, {'connected_gene': 'ZNF677', 'score': 19.36}, {'connected_gene': 'LENG8', 'score': 14.85}, {'connected_gene': 'CNOT3', 'score': 14.84}, {'connected_gene': 'ENSG00000269288', 'score': 12.98}, {'connected_gene': 'ENSG00000267838', 'score': 12.35}, {'connected_gene': 'LENG8-AS1', 'score': 12.24}, {'connected_gene': 'ZNF525', 'score': 12.04}, {'connected_gene': 'ENSG00000235681', 'score': 11.99}, {'connected_gene': 'LILRB3', 'score': 11.65}, {'connected_gene': 'VN1R103P', 'score': 11.63}, {'connected_gene': 'LILRA6', 'score': 11.59}, {'connected_gene': 'ENSG00000249189', 'score': 11.58}, {'connected_gene': 'LILRB5', 'score': 11.56}, {'connected_gene': 'ZNF761', 'score': 10.51}]
chr19	GH19I054199	54199643	54211777	2.67	[{'connected_gene': 'RPS9', 'score': 576.98}, {'connected_gene': 'PRPF31', 'score': 83.39}, {'connected_gene': 'LENG8', 'score': 76.91}, {'connected_gene': 'LENG8-AS1', 'score': 70.73}, {'connected_gene': 'CNOT3', 'score': 67.81}, {'connected_gene': 'ZNF525', 'score': 63.2}, {'connected_gene': 'ZNF845', 'score': 52.51}, {'connected_gene': 'ENSG00000235681', 'score': 52.44}, {'connected_gene': 'LILRB5', 'score': 41.54}, {'connected_gene': 'ZNF765', 'score': 41.36}, {'connected_gene': 'ZNF761', 'score': 40.82}, {'connected_gene': 'TPM3P6', 'score': 32.66}, {'connected_gene': 'LILRB3', 'score': 22.38}, {'connected_gene': 'LILRA6', 'score': 22.37}, {'connected_gene': 'TPM3P9', 'score': 21.81}, {'connected_gene': 'ZNF677', 'score': 21.27}, {'connected_gene': 'LENG1', 'score': 21.09}, {'connected_gene': 'LILRA2', 'score': 19.95}, {'connected_gene': 'ENSG00000267838', 'score': 18.98}, {'connected_gene': 'MYADM', 'score': 16.9}, {'connected_gene': 'LILRA4', 'score': 15.14}, {'connected_gene': 'VSTM1', 'score': 13.45}, {'connected_gene': 'LILRA5', 'score': 12.73}, {'connected_gene': 'ENSG00000249189', 'score': 12.34}, {'connected_gene': 'TMC4', 'score': 12.22}, {'connected_gene': 'TSEN34', 'score': 12.14}, {'connected_gene': 'ZNF813', 'score': 10.04}, {'connected_gene': 'NLRP12', 'score': 9.94}, {'connected_gene': 'LOC105372457', 'score': 9.83}, {'connected_gene': 'PPP1R12C', 'score': 9.65}, {'connected_gene': 'LILRA1', 'score': 9.52}, {'connected_gene': 'MBOAT7', 'score': 9.27}, {'connected_gene': 'LILRP1', 'score': 8.68}, {'connected_gene': 'LILRB2', 'score': 8.22}, {'connected_gene': 'OSCAR', 'score': 8.08}, {'connected_gene': 'LILRB1', 'score': 6.16}, {'connected_gene': 'LAIR1', 'score': 3.17}, {'connected_gene': 'LILRB4', 'score': 2.67}, {'connected_gene': 'TARM1', 'score': 1.32}, {'connected_gene': 'ENSG00000224579', 'score': 0.77}, {'connected_gene': 'ENSG00000223660', 'score': 0.44}]
chr19	GH19I054178	54178624	54178773	0.76	[{'connected_gene': 'TMC4', 'score': 0.44}, {'connected_gene': 'TSEN34', 'score': 0.39}, {'connected_gene': 'MBOAT7', 'score': 0.39}]
chr19	GH19I054179	54179210	54181067	0.95	[{'connected_gene': 'TMC4', 'score': 9.36}, {'connected_gene': 'TSEN34', 'score': 0.44}, {'connected_gene': 'MBOAT7', 'score': 0.44}]
chr19	GH19I054417	54417808	54422296	1.25	[{'connected_gene': 'LENG8', 'score': 12.14}, {'connected_gene': 'LENG8-AS1', 'score': 12.14}, {'connected_gene': 'TSEN34', 'score': 6.4}, {'connected_gene': 'TTYH1', 'score': 0.77}, {'connected_gene': 'ENSG00000268496', 'score': 0.39}]